Cflo003641.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Camponotus floridanus
Gene Symbol
-
Assembly
GCA_003227725.1
Location
NW:165929-174225[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 4.4e-05 0.0035 17.2 1.4 1 23 308 330 308 330 0.97
2 11 0.00018 0.014 15.2 0.4 1 23 342 365 342 365 0.95
3 11 0.0003 0.024 14.6 2.8 1 23 409 431 409 431 0.98
4 11 4e-07 3.2e-05 23.6 1.5 2 23 488 509 487 509 0.97
5 11 5.1e-05 0.0041 17.0 1.1 1 23 514 537 514 537 0.95
6 11 7.2e-05 0.0058 16.5 0.2 1 23 575 597 575 597 0.97
7 11 6.9e-07 5.5e-05 22.8 1.7 1 23 607 629 607 629 0.96
8 11 3.3e-06 0.00027 20.7 1.8 1 23 635 657 635 657 0.99
9 11 7.9e-06 0.00063 19.5 0.2 1 23 663 685 663 685 0.98
10 11 0.00013 0.01 15.7 3.4 1 23 691 713 691 713 0.98
11 11 0.00019 0.015 15.2 0.4 1 21 719 739 719 740 0.95

Sequence Information

Coding Sequence
ATGGCAATTTCGAACGATGACGTGATGATGAATAACATGGCTCGCGTAGAGCGAATCGTGGGCGACGAATGCCGCATCTGTCTCAAGTCGTGCACGGAAACGTGTCAGCTGTTTCGCAATGGAATATCGGAGAAGCTGATGGCAATCGCCGCCGTGCAGGCGGAGGAGGGAGATGGTCTTCCAGCTTCCATCTGTTTATCTTGCAACCATCTGCTCGACATGTCTTATGACTTCAAATGCCAGATTCAGGATTCCGATCTGAAGCTACGTCAGATCCTGAAATCACAGATTCAACCTATGTTACATGATAAACACGCGAAAGATGTTACAACAATGGTGAAACATATAATTACGAATCTATCCAATGTAGCCTCCTGTGATAAAGATAATCGTATCGTGGAACAAAAAATCTATTCGCATCACGATATGATTACATTCGATAATACCATTCAATCCGATGCGATAATTAACAATGAATCTTGTATACATAACGAGTTTATGCAGAAAACAGAGGAAATTATAGAATCAAATGGCAAAAATAATGCACAATACGATGTACTCAAAGAGAATGTACATAACACTGAAATAATAGAAGTAGCCTTATGCCACGAGGCACGTATGGATGATGCGCTTGATAATCGATCAAATAGATTGTCCGACTCGACAACAGACGACAGACGCATCAAGCAGGAACAGTTGATATTGTCCGAAGACAATGAGACACCGGAAAGTTTAACGGACGAAAATAGAGAAGACGCATTAAAGGTCGAAGTTAAGAACGATGCGTCGTCATTTGAGGATTTCAATAATCATAATGTTTCAAACTCTGCAATGTTAGAAGCAGACaagcaaaatatgaaaaacgtTATGAATTGCAGTGACGATGAAGAGAAGCCACTAATAAATAGAACAATCGGACACCACAGATGTTTGCTTTGCATGAGATCATTTTCGACGAAAGGAGCACTACAACGACATATGATTGTGCACAAACACAAACATAAACACAAGACAAAGCTGCGTTATGTGTGTTATGTGTGTGACAAACAATTCTCGAGCATTGCTAAGTTGAAAAGCCATGTGCTTAACAGTCATGAAAATAATACAGGGGATGATAAAATATCGcaagaaattaatgaaaataaaaaaattaagacatCGGCAAAAGTTACTAGAAGTGGCAACGTGTTGGACGGCAcaagagaagagaagaaaagttttaaatttacatgcaAAGTTTGCTCAAAGCAATTCATATATCAAAAGTCCTTTTTATCTCATGCTAAAACTCATCCTGAATATAACGAAGAGACTTCGAATGATGTACTCGATCAGCATGTAAATAAAACAACAAACGAGCAGAAGGAGAGGACACCAAGAGACACCTTCGGAGAAAATGAATccgaagaggaagaagaagaagaggacgACGATGATAGCGATCTACCGATCGAAAGTTTACAGTGCACACAGTGCGGTAAGCTTTTCGCTACAAAGAGAAACCTGAAGAGACACATTTCGACGCATAGCGGCTTGAAATTCAATTGCTCGACCTGCGGGAAAGGGTTCTCAAGAATTGACAAACTAAAAGATCACGAACAATCGAAGCATAAGGAGGAAATATTCGGGAACACTGACGATGAGGATGATGACGATGAGGATAATGAGAACAAAATCAATGAGAATTCCGAGAGTCGGAAGAAGgACCGACACAACAGGCCGCATAAATGTGCGCTCTGTCCGAAGGCGTTTGCGCAGGCTCAATCTCTGGCGAACCATGTAGAGAGGCACAAACGAGTGAAGGACACACAGAAGCGATTTCTCTGTGAGAAGTGCAGCAAGTGTTTTGCCCAGAGCGGTTCGCTGGTGGCGCATATGCGCACGCACACTGGCATCAAACCGTACGTGTGTAACACGTGCAGCCGCGCTTTTACCAAGAGCACATACTTGCAATTGCATTTGAGGACTCACAGCGGTGAGAAACCGTACATTTGTCAATATTGTAGCAGGGCGTTCGCCCGAGCCAACACCCTGGCGCGACACATCACCATGCACACCGGTGAGGCCAAGTATCATTGCAACGTCTGCGCCAAGTCCTTCCGACGATTGACCTCTCTGAACGAGCATACGTACACGCATACCGGTCAGCGACCATATGTGTGCAAGCTTTGTACCAAAAGCTACAATAATGCTGGATCATTGTACGCCCATACGAAGAAGTGCAAAGCGCAGCAGTTATCCGGCTCAACAACGGCCACGATCGGTTTTGCGGTCTCTGCGACGGACAACACGCCGCAGCAGAACGATACGCCCATGCCCCAACTACTGATCTACTCTCAGAGAAAATTGGTAGAGGAAGCGACGGTAGGTCAAGTCGTATCCACGCCGCAATACATGATGGCGAATGTGCACAATCAGAAAACCGTGCCCGCTAACGTAATTCAATCGTTTACCGTAGAGGATCCGAATGTGTACAATTCGAAACAATTTAAGAATCCGTACTACGCTATCTATCCGAACATGTAA
Protein Sequence
MAISNDDVMMNNMARVERIVGDECRICLKSCTETCQLFRNGISEKLMAIAAVQAEEGDGLPASICLSCNHLLDMSYDFKCQIQDSDLKLRQILKSQIQPMLHDKHAKDVTTMVKHIITNLSNVASCDKDNRIVEQKIYSHHDMITFDNTIQSDAIINNESCIHNEFMQKTEEIIESNGKNNAQYDVLKENVHNTEIIEVALCHEARMDDALDNRSNRLSDSTTDDRRIKQEQLILSEDNETPESLTDENREDALKVEVKNDASSFEDFNNHNVSNSAMLEADKQNMKNVMNCSDDEEKPLINRTIGHHRCLLCMRSFSTKGALQRHMIVHKHKHKHKTKLRYVCYVCDKQFSSIAKLKSHVLNSHENNTGDDKISQEINENKKIKTSAKVTRSGNVLDGTREEKKSFKFTCKVCSKQFIYQKSFLSHAKTHPEYNEETSNDVLDQHVNKTTNEQKERTPRDTFGENESEEEEEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRIDKLKDHEQSKHKEEIFGNTDDEDDDDEDNENKINENSESRKKDRHNRPHKCALCPKAFAQAQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNTCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNVCAKSFRRLTSLNEHTYTHTGQRPYVCKLCTKSYNNAGSLYAHTKKCKAQQLSGSTTATIGFAVSATDNTPQQNDTPMPQLLIYSQRKLVEEATVGQVVSTPQYMMANVHNQKTVPANVIQSFTVEDPNVYNSKQFKNPYYAIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00109993;
90% Identity
iTF_00264476;
80% Identity
-