Cflo007433.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Camponotus floridanus
Gene Symbol
fru
Assembly
GCA_003227725.1
Location
NW:68497-83385[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.23 18 5.5 4.5 1 23 420 442 420 442 0.98
2 20 0.83 66 3.7 3.6 1 21 448 468 448 471 0.96
3 20 0.00027 0.022 14.7 0.6 2 19 478 495 477 499 0.89
4 20 7.3e-05 0.0058 16.5 4.7 1 23 505 527 505 527 0.98
5 20 0.0016 0.13 12.2 0.1 3 23 535 556 533 556 0.93
6 20 0.22 18 5.5 1.8 1 23 563 586 563 586 0.98
7 20 9.2e-06 0.00073 19.3 0.8 1 23 590 612 590 612 0.97
8 20 0.0012 0.099 12.6 0.5 1 23 618 640 618 640 0.98
9 20 4.4e-05 0.0035 17.2 1.3 1 23 646 668 646 668 0.97
10 20 1.4e-06 0.00011 21.8 2.8 1 23 673 695 673 695 0.96
11 20 1.1 86 3.3 0.2 2 19 1067 1084 1066 1085 0.84
12 20 0.17 14 5.8 4.9 1 23 1094 1117 1094 1117 0.98
13 20 0.0032 0.26 11.3 0.4 1 23 1123 1145 1123 1145 0.97
14 20 0.00031 0.025 14.5 0.7 1 23 1151 1173 1151 1173 0.98
15 20 0.00014 0.011 15.6 1.4 2 23 1180 1201 1179 1201 0.97
16 20 0.44 35 4.6 0.6 2 23 1207 1229 1206 1229 0.90
17 20 6e-06 0.00048 19.9 1.3 1 23 1233 1255 1233 1255 0.97
18 20 0.00073 0.058 13.3 3.0 1 23 1260 1282 1260 1282 0.98
19 20 3.1e-06 0.00025 20.8 1.5 1 23 1288 1310 1288 1310 0.98
20 20 0.0013 0.1 12.5 0.8 1 21 1315 1335 1315 1336 0.95

Sequence Information

Coding Sequence
ATGGATGTTGAAGAGGGAGAGGCGAAAATGTGCAGGCTTTGCGGCCAATACGAGAGAATTTACATCGACGTGTTTGGTGAGGAGGGCGTCAAACGTTACCTGGGCCTTAAAATCCACCGAAAAATCAACATCCTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAATGTCTGGGCAAGCTTGAATTCGTTTGCGACTTTCAAGAGGAGTGTCTGCGCACCCAACATGTGTTACGCAATCAGTACAATCTACCGCCTTTAACAGAGTCTGCGGAAGTAAAGAACGAAGAATCAGCTTCCTCGGCGGGCACATCGTCTACGGATAATAACAAcagtattgaaaaaaatcttaattccACTAGAGGTAGTCAAGCGGAAGAGAACCAGAATGAAGCTAATGTCGTTGTCATCGTCAAGGATTCGGCGGAGCagcaaaagaagaaaaacacCGTTTCGAAGACTTTGAGGAGCCTTCGCAgtcaacaacaacaacaacaacaacaacaacttTCCAAAGATAGCGATGAAACtaatatagagaaaaatgtacaGAATCAAAGTATAACAGAAACATCGCCAATTCGCCATTGGCTTCGAAGTAGACAAAGCGCGGACTCGTCATCGTCATTATCTGCAGCGGACAACGAGGAGACTCCAATCGCGAATAGACTGAGAAGTCACAATagtgtagaaaataatatcaacGCTCGTTCAGTAAACGGTAACGGTAACGTCAACGAGAATATGGATAAACAGACGTCGaaacaacagcagcagcagcaagaTTCATCATCGACGATTCAGCTGCCGACCTCGGCgttcgataaattattaacgatcGTTTCTGGTTCTCCTGATATCGAGGTTTCCGTAAAGGAGACGAGAAATCGGAGTAACGATGCCGAAGATATCAGTTTTACGGTGGAGCTGTGTAAGAAGCAGAATGACGATGTCGCGACAGCGCGAGCGCGAATCTTTCCGGATCAAGGCTATTGTCTTGTCGACACGGCGATCGTAAATCTGCTGCAGAACGACAACAGCGTAGAGGTAAATGGCATTATCAGTGGTATTCTCAGCGGGACATCCACGAAGAACGGCAGTGGGGCAGCGGCGAAGCTTAAAGATCTGGCGGAGCTGGAACAACAGCTGGAGGCAACGCAAAATCCGGAGGAGCTCTTCAAGATCGACGGCGAGGAGATTAAAGTGGACGACAACGTGGAGCACGTGGTGAACGGTACGCAAAACGGTTATGCGTGCAAGCTCTGTCGCAAGTTTTATGAGCGCCGAGATAAATGCACGGTGCATGTAAAAACGCATCTCGGGATCAAACAGTACACATGCGTCGTCTGCAACGCCAAATTTGTTTGCAAGTCCGACGTGATGAAGCATATCCGATGCTCGCACACCAATCCGAGGCCTATACAGTGTCCCAAGTGTCCGAAACGATTTAAATCCAAATTTTATCTGGCCGAACACGACAACGTTCACAAAGGCGTGCGACCGTACAGCTGTACAAATTGCGGACAGAGCTATCACCACAAGGTTTCGTTACAAATCCATATGAAGTCGCATTTACCACCGCAGAATCTCGCATGCGAGTATTGCGGTAAAGTCTTTCCGTTTCGTACGCGATTACTCGGCCACATCGCGAGCGTTCATATGAAAAAACGACGAAATTTTCGCTGCCGCTTCTGTTACAATCTCTACTCCAGCTTGTCGGTGTTGAACGAGCACATTAAGACGCGTCACGCGACCACGTATACATGCGACACGTGCGGCAAGACCTTTAAGGTCGCTTCCAAATATAAGGCTCACGTGCTGCAACACTCCAATCCCAAACCGTTTGTGTGTAACGTCTGCAACAATCGTTACGCGTCCAAGGCATTTCTCAACGAGCACCTGTTGAAGCACGAAGGCTTGCGCAAGCACGTGTGTCAGGAATGCGGCGCGAATTTTGCACAAGCGAGTCATCTGGCCGCTCATCGCCACGTACACGGTGAGAAGACGCACGCTTGCCCCGAGTGCGGCAAGAAGTTCAATCGTCGCGACAACATGAAGGTACATCGGAAGCGGCACTTTGAGGAGAAGAAGATTGGCGCGGCCGGCAAGCAAAAAGGCACGTCCGACAATAACGACTCGGCAACCTCTACCGCATCGATTAATGAGAAATActttttatttaaaagaagtgAAGAACCTCTTATTCTTTTAGAAGGTTCGATCAAGGAAGATGACAGTATGCCGCAACAAATTTGTACACTTTGCTttgaaaagttaaattttacgTGCGCATTCTACGACAATTGCCATGAAATTCAAAAGAAACTCTGGTCTACTATTgagGAAACCAACGACGATAATAACGTTGAGGACAAAGAAAACACTATATCGCCAAGGAGCAACGTGAATAAACGTCAGATAAGGACCTTGTCGGAGAATTTGAGCAAAAACACTCATTTGACTAACGCAGGCTCGCTGATTATCAATgaatcattaaaaaatcatagtCGTGGAAACTACCTTAGACGAAGCTGTTTACGCGAAATTTTCCCGAATGCCACAAGTTTTTGGGCGCAACAACAACCTGTCGGCATCCAGGAGAATAAACGAAATGCTCTAGCGCAGAAAGAGACAGTGGGTGTTGAAAAGACGGTGAGGCAGGAAATCGACATCAAGAAGGAGTACTTATTATCTGAAAATTCGAGCTCAAGGATATTACCTGCTTCTTTGCTCAATAATTCAACATTATGTGTTCATTCCTTGGATTGGTCTCTTAGGTCATGCGAAGCAGACAAACCCAAGAATGTCACGAATATTGCGGTAAACAACAGTCCACCGCCTGGTGATGAGGCAGAATCAAATAAAAGCAGCAATTTTGAATCTAGTAAACTCGCGGTGCCGGATAATATCGGAAAGTCTCTTCCGATTGTTCCAAATGCACCAAAAAAAGCTTGCCCTCTTGAATCGAATACGATCTTTCTCCACAATAACGAGAGCACTGCTCTATCTGGATCGTCATCGATAATCAACGAATGCAAGGTGAGACGCAAGTGCAGCAAAATTTCCGAGTTGATTACCGACGAACAAAAACAAATCATAGAAACATATTATCTGGTAGACGTAGACATTATGAAAAACTATGCAGAGGAGGTGCGGAACAACATAACAGTAcgggataaaaataatatcgagtgCAATATTTGTCCTGCAAAATATTCTAGACTGGATAAGTGTGAgGTGCATATCTGGGCGCATCTTAACATCAAGCCGTACAAATGTAAAAAGTGCAGCTTTTCGACAGTGACTCTTAGTAATATTCGCTGTCACATTAGAAAAAGTCATTTGAAAATTAAGCCGTTTGCTTGCCAATTGTGTTCGAAACAATACGCGACTTTTGCACTTTTGAAGGAGCATGTCAATAGTCACACTGGCGTACGACCATATAAATGCGAAATGTGCAATTTTTCCAGCACTAGCCGACAGGCCTTGAGCAATCATATGGACATCCACATGTCAAGCaagGATATTCCTTGCAATATTTGTGACAAAACCTTTCACTCACGCTTAAGGATGCGCGCACATATGCGTATTCATAATGACAACAATGTGACATGTGATATTTGTCGGGCTCGCTTGTCGAATGAGAAAGCTCTGGAAGCACACTGTAAGAAAGTGCACGTACAGGATTATATCTgcgaaatatgtaataaagtgTACAAGTCCAGAAAAGCTTTGCATAATCATATgaatGCTCACAAAGAGGCTAAATATAAATGCACAAAATGCCCTAAAGCATATAAAAGTAAACATATTTTGAACGAGCATCTCCTGAAACACGAGGGTATCCGAAAATACAAATGCTTCGTTTGCGAAAAATCGTTTGCTCAACAATCGCATTTGGCTGCTCATAATAAAGTGCATAATCCGCCCAGTTATGAATGTCCGGGTTGCGGCAGGAAGCATAATCGCCGCGACAATATGAAAACACATATGACGCGATGCAAATCCATCGTGCCAATCCAAATAACCGTCCAATGTGGGCTTCGACCGAcaaaaaattga
Protein Sequence
MDVEEGEAKMCRLCGQYERIYIDVFGEEGVKRYLGLKIHRKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQHVLRNQYNLPPLTESAEVKNEESASSAGTSSTDNNNSIEKNLNSTRGSQAEENQNEANVVVIVKDSAEQQKKKNTVSKTLRSLRSQQQQQQQQQLSKDSDETNIEKNVQNQSITETSPIRHWLRSRQSADSSSSLSAADNEETPIANRLRSHNSVENNINARSVNGNGNVNENMDKQTSKQQQQQQDSSSTIQLPTSAFDKLLTIVSGSPDIEVSVKETRNRSNDAEDISFTVELCKKQNDDVATARARIFPDQGYCLVDTAIVNLLQNDNSVEVNGIISGILSGTSTKNGSGAAAKLKDLAELEQQLEATQNPEELFKIDGEEIKVDDNVEHVVNGTQNGYACKLCRKFYERRDKCTVHVKTHLGIKQYTCVVCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLAEHDNVHKGVRPYSCTNCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPFRTRLLGHIASVHMKKRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCDTCGKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHVCQECGANFAQASHLAAHRHVHGEKTHACPECGKKFNRRDNMKVHRKRHFEEKKIGAAGKQKGTSDNNDSATSTASINEKYFLFKRSEEPLILLEGSIKEDDSMPQQICTLCFEKLNFTCAFYDNCHEIQKKLWSTIEETNDDNNVEDKENTISPRSNVNKRQIRTLSENLSKNTHLTNAGSLIINESLKNHSRGNYLRRSCLREIFPNATSFWAQQQPVGIQENKRNALAQKETVGVEKTVRQEIDIKKEYLLSENSSSRILPASLLNNSTLCVHSLDWSLRSCEADKPKNVTNIAVNNSPPPGDEAESNKSSNFESSKLAVPDNIGKSLPIVPNAPKKACPLESNTIFLHNNESTALSGSSSIINECKVRRKCSKISELITDEQKQIIETYYLVDVDIMKNYAEEVRNNITVRDKNNIECNICPAKYSRLDKCEVHIWAHLNIKPYKCKKCSFSTVTLSNIRCHIRKSHLKIKPFACQLCSKQYATFALLKEHVNSHTGVRPYKCEMCNFSSTSRQALSNHMDIHMSSKDIPCNICDKTFHSRLRMRAHMRIHNDNNVTCDICRARLSNEKALEAHCKKVHVQDYICEICNKVYKSRKALHNHMNAHKEAKYKCTKCPKAYKSKHILNEHLLKHEGIRKYKCFVCEKSFAQQSHLAAHNKVHNPPSYECPGCGRKHNRRDNMKTHMTRCKSIVPIQITVQCGLRPTKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-