Cfel020446.1
Basic Information
- Insect
- Camponotus fellah
- Gene Symbol
- -
- Assembly
- GCA_030586385.1
- Location
- JAPIVC010000428.1:156820-160263[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0016 0.33 12.9 1.0 1 23 117 140 117 140 0.90 2 11 0.0075 1.6 10.8 4.7 2 23 263 285 263 285 0.91 3 11 6 1.2e+03 1.7 7.6 3 23 428 449 427 449 0.95 4 11 0.38 79 5.4 2.9 1 23 498 521 498 521 0.93 5 11 5.2e-05 0.011 17.6 0.3 2 23 569 591 568 591 0.96 6 11 0.0012 0.24 13.3 0.1 3 23 614 635 612 635 0.93 7 11 0.0078 1.6 10.7 3.6 2 23 696 718 695 718 0.96 8 11 0.11 22 7.2 4.2 3 23 733 754 731 754 0.92 9 11 0.0001 0.021 16.7 0.1 2 23 801 823 801 823 0.94 10 11 0.077 16 7.6 1.2 2 23 935 957 934 957 0.93 11 11 0.0069 1.4 10.9 0.8 1 23 1029 1052 1029 1052 0.98
Sequence Information
- Coding Sequence
- ATGTCATCGAGCATGACATCGTCGCACgagccgacgacgacgatggccGAGGCGGAGCTGGACAGCGACGGTTCGAGCTGCGGCGAGCGCGACACGTGGAAGCGCGTTCGCGGCGATTCCGCCGATCTCGGTGTCGGTACGAAAAAACGTCGGAAGCAAACAACACCGGTAAGATTTTCGTCCAGTATAGCGACAGGCGCGCATGAGGATGGCTGCGAGGACGAGCGCGAGGACGAGGATAGCGAAGGTAAGCCGTCGTCGCGATCGCCGTTGCCGGGCAACGAGCATCACCATCGTCAACACTATCATCATCAGCCGTCGTCGAAAGACGAGAATCTCAACAACGAGTTTCGTTGCCACTTCTGCGGCCGGTTCTTCGACAGCGACGAGACGCTCAACGTCCACGTGGACGGCGAACACGGTGGCGCGAGACAGGCGACACCGAGCGTCACCGTCAAGGTAGAACCGACGCAGCAGCTGGATCAGACCAATGATGGTCCCGTTAGCCTCTTAAGCGTCAAGAACTTCGCGACTACCTGGCTGGCGTCCGGCAGCCAGCAACACGTGCAATCGCAGACGCAGATGCAATCGCAAGGCGAGGACTCGTGGTCGGGCGGTCCGGTCAATCAGATCGTCACGATGACTAATCACTTGCAGGCGCTCTCGGGTTTTCCTGGCGCTCTCGCGCAGTATCTACCCTTGCCGAGTTTTCCCCTACCCGATCCCCAGCAAGTCCCAAGATCCTCCCTCGGTCCGATGCCGGTCAAGATTTTTAATCCGGACGCGTACTGCGATATGTGCAACAAGGAGTTCTGCAACAAGTACTTCCTGAAGACGCACAAGGCGAATAAACACGGGATCTATGTGGATTCGCCGGCGCCGAGCACGGCTACGGATGCCGCTAATGTATTCGGCGCCGCGAACTTTCCCGCAGGTAATACGAGCGTGAAGCTGGAACCACCGACGACGCCGCCGCAGAAACGTTTCCGCAACGAGGAATCTGCCGTAAAAAAGCAGAAGCAAAAAAATGAATCGTTGATGGAGCAGTCGGACAGCCAACAGATCTCTCTGTCGCAGAACGAGGAGGATCGAGAAACCTCGCGCGATAGTCCCAGCGGCATGGAGGCGCTTCTTAAGCAGGAATACGGCATCGAACAGGAAGACGCTACCTTTATGCCGGCTCCGAGACACCTTTCGCCCCAGTCCATTCAACAGGCGCGCGATTCCGGCTTCAGCGCCGATCTTCTGCGTCGTCTGGGCGTCATAAATCCCGACGCGTTTTGCGAAATCTGTTGCAAGGAATATTGTAACAAGTACTTCCTGCGCACGCATAAGATGAAACGGCATGGTATTGTGGTACAAGACAACGAGAGGTCACCTGGTAATCCTGGCACGACTGTCGCCACGTGGCACCAAGTGCAGACTAGTCCGCTGAACCTGATCGTGGCCGATTCCATCGCCGCAGAGTCCAACGAGCGTATCGGTGAAGAGCACGAGTGCAAATCTTGCGGTATCCGCTTCCAAACGGTCGGTCTTTATCAGGCGCACTGCAGGAAGATACACGAGGGCGAAGAACGTGGCACGCCGAAACAAGAATACGACCTAGAAAGCTCCGATCAGCGCACCGACTCGATCTCGGAGGATCTTCAAAAGCTGCAGACAATGATCATGCAACTGAATGGCTTGGACTCCGATAAAGGATTATCCTGCGGCGTCTGCGGTAAAGAGTGCGACTCCAGGTCGGCTCTGCGCGTTCATATGGCGACCGAACATGGTGTCGTCAATGATGAAATTTCGCCGCAGGAAACGTCGCCAACGCAGATCGTCTCGACTATCTTCTGCACTTTGTGCGAGAAGGATTACCCCAGCCAGGAGGCTCTGAGAAGACACATTAGCGAGGAACATCAACCTGTTGTGTCCAGCGTTATCACGCCGCCGACACTTCCGCCGACGATAATCTCCTCTCCCGCCAGCTCGACACCAACTAATCAGGTTCTAAGCAATCAAACGATGACGAtaacgacgacggcgacgacgacgacgactacGGATAAGAAGATGACGTCATTGACGCCAACATCCAGCTACTGCGAAATATGCAACAAGGAGCTGTGTAACAAGTATTTTATGAAGACGCACATGCAACGAATGCACGGCATCGAAATTGAAAATGGTGCGCAGATCGGTGGtgttatttgcaatatttgcaaCAAAGAGTTGTGCAGCAAATATTTCCTACGCGTTCACAAACACAACACTCACGGGATCGTCGATGAGAACACGTCGTCGGCATCAACATCGAATAAACAAGAGCCTTACGACGCTTCCAGCGCAGAAGATTCGGTATTGAAGCAGGAATTGAGCGATCTTAGTCATAAGTATTTCATTCACTTCACCGAGGTATGTCCGATCTGCAATCGGAGGTTTCGCAGCATCAAGTGGTTGAAAGCCCACTTGATGGGTGATCATGGCAAAGTCGGGATTGATAAATGGCGCGAATTAGAACAGCAATATCAAGAAACGCCCAGAACCAGCGGCAAAAGTGCTGTCGCTCCAGTAAAGAACATCCAACAAACGTCGAATCTGAAGATTCCCAATGGCTTTGAGATTCAACAAGTCAAGTCGACCGATTGCACCAATCTAGGAAATCAGGTGTTGTCAAATTTCTTTGGGTCTTCGTCCGAGGAACaccagttaaaaaattatcattgcgCCTATTGCAACTTTGCGACCTCCGTGTTGCCGTTACTCTTCTTTCACGAGCGATCACACGTAAGTTTGCAGGAAGGTGACCGGCCGTTGCAGTGTCCGATTTGCTTGCAGGACTTCCATCAACTGGAACTACTTCATCAGCACCTACTCGCTAAGCATCAAATCCCCACTTTGCTATCGCAGTTTCAGTATCCTCTTCTGAATAATTTGAGATCGGACGCTGATGTCAAAGCGAGCGACGCCAAGAACAAAGCCGATCAAGATAAGGACAACCGAGCGGGATGCAGTCCGcagatcgataaaaatattcccgAGCCCGCGAGGAACCAACAGCAGGATGACACCGCCGTCCAGGTGACTGCTCATGGCGCGTACAAGTGCGCTCAGTGCGGATACGCGACGACGAATCTAAATCGAATCAAGAAACACGTGCGAAAAGATCACAAAATGATCGGCGATCCAACGGAGAGCGTGATCGCCGAACTTAGCAAGACTCTGAAAGACGTGGCGAATAAGCAGAAGGTACCGGCCTGTTTTGCGATGCCGCAGGACATGAATTCGAACCCCGATAAAACCATCATGCAACCGTTCTTGATCGAGGAACAAGATCTGATGCAGGCGGGCGTCGAATCCAGCTCGGCGAAGAGATTCGCGCCAGCTCTGGTCTACTTGCCAGTTAAATCCAGAATCAGCAACGCCTTGACCGCTTCCTTCACTCTCACCCCCGCCtga
- Protein Sequence
- MSSSMTSSHEPTTTMAEAELDSDGSSCGERDTWKRVRGDSADLGVGTKKRRKQTTPVRFSSSIATGAHEDGCEDEREDEDSEGKPSSRSPLPGNEHHHRQHYHHQPSSKDENLNNEFRCHFCGRFFDSDETLNVHVDGEHGGARQATPSVTVKVEPTQQLDQTNDGPVSLLSVKNFATTWLASGSQQHVQSQTQMQSQGEDSWSGGPVNQIVTMTNHLQALSGFPGALAQYLPLPSFPLPDPQQVPRSSLGPMPVKIFNPDAYCDMCNKEFCNKYFLKTHKANKHGIYVDSPAPSTATDAANVFGAANFPAGNTSVKLEPPTTPPQKRFRNEESAVKKQKQKNESLMEQSDSQQISLSQNEEDRETSRDSPSGMEALLKQEYGIEQEDATFMPAPRHLSPQSIQQARDSGFSADLLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIVVQDNERSPGNPGTTVATWHQVQTSPLNLIVADSIAAESNERIGEEHECKSCGIRFQTVGLYQAHCRKIHEGEERGTPKQEYDLESSDQRTDSISEDLQKLQTMIMQLNGLDSDKGLSCGVCGKECDSRSALRVHMATEHGVVNDEISPQETSPTQIVSTIFCTLCEKDYPSQEALRRHISEEHQPVVSSVITPPTLPPTIISSPASSTPTNQVLSNQTMTITTTATTTTTTDKKMTSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTSSASTSNKQEPYDASSAEDSVLKQELSDLSHKYFIHFTEVCPICNRRFRSIKWLKAHLMGDHGKVGIDKWRELEQQYQETPRTSGKSAVAPVKNIQQTSNLKIPNGFEIQQVKSTDCTNLGNQVLSNFFGSSSEEHQLKNYHCAYCNFATSVLPLLFFHERSHVSLQEGDRPLQCPICLQDFHQLELLHQHLLAKHQIPTLLSQFQYPLLNNLRSDADVKASDAKNKADQDKDNRAGCSPQIDKNIPEPARNQQQDDTAVQVTAHGAYKCAQCGYATTNLNRIKKHVRKDHKMIGDPTESVIAELSKTLKDVANKQKVPACFAMPQDMNSNPDKTIMQPFLIEEQDLMQAGVESSSAKRFAPALVYLPVKSRISNALTASFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729606;
- 90% Identity
- iTF_00868350;
- 80% Identity
- -