Cfel014446.1
Basic Information
- Insect
- Camponotus fellah
- Gene Symbol
- -
- Assembly
- GCA_030586385.1
- Location
- JAPIVC010000351.1:1515387-1518920[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.033 6.8 8.8 0.6 6 23 275 292 272 292 0.92 2 11 0.86 1.8e+02 4.3 0.2 1 21 297 317 297 320 0.82 3 11 0.00015 0.032 16.1 2.0 3 23 334 355 333 355 0.96 4 11 0.0048 1 11.4 0.5 3 23 368 388 368 388 0.98 5 11 9.5e-08 2e-05 26.2 1.5 2 23 432 453 431 453 0.97 6 11 0.0091 1.9 10.5 0.4 1 23 458 481 458 481 0.89 7 11 0.99 2.1e+02 4.1 1.6 2 23 551 572 551 572 0.96 8 11 0.00021 0.044 15.7 4.8 1 19 580 598 580 602 0.94 9 11 9.8e-06 0.002 19.9 0.9 1 23 660 682 660 682 0.99 10 11 0.038 7.9 8.6 0.1 1 23 748 771 748 771 0.97 11 11 6.5e-07 0.00014 23.6 5.9 1 23 776 799 776 799 0.98
Sequence Information
- Coding Sequence
- ATGTGTGCTTCGGTGAACGAGACTCTCTTTACGATGGATAATACGATCGACAAGTGGGACAATGCCTGCAGATTGTGCTCGGAGGAGAGGAACGAGATGCTGCCCATCTTCGGGGACGAAGGTCTACAGCGCAGGGTGGCTCAGAAGCTGCGCGCCTGCCTACCCGTGCTGGTGTACAACACCGATCCCTTGCCGAAACAAATTTGTCAGTTTTGCGCGGCGAGGCTGGACGATGCGTACGAGTTCAGAGAGTATTGTCTGAACGTCTACAGGAACATGCACGCCATGTTATTCAAGTATCGACAGCTGGAGTCCGTGCAGATATTCCTCGACGCGATGAAAAACTCGCCGGATCCGTGTCAGGCACAACTCTGCAAGGAGAAGTCTAGAGCACCACCGCCATTGGTTCCTCTATCAGCCGGCCTGCCTCTTAATGAGTCGGTGACTCCGATCAATCAGGTTAGCCAAGATCAATTGCAAAATGTCTGCATAGAAACCTTGTCTGAACTGCCTTGCGAGGTAGAGATCAAGGAAATGAATACGGATCCAATTTTGGATGACGAAACTACATTCTGCGAGCCATTGACGAAAAAATACAAGTTGTCCGAGATGTTTGACACAAATATGCAAACAAAGACAGATATTGTTTCTATATTTGACACAGAAgaagaaaatacaattttcaagGCAGATTATCAAacgaaaaaggaagagaaacgAACTAGTATTTTAGAACAAGTTTTGACTGGTAATTTAACAATGAATAATCATCAAAAGTTACAACCTAAAGCGAAATTATCTTCCGAATGGTGGTGTGCGCCTTGTAATAGTTATTACAGaACAAAGGACAGTCTAATGAAACACATGCAATTGCACTGCCCGCGTATATATAGCTGTAGAAAATGTTCCTTATCTTTCGAATCTGTAGAAATTTTGGCAAAGCACGAAgctaataatcatttaaaagttaaattggATTTTACAGAAAGCTTAAAAGATTGTCATAAATGTGATCGGCAGTTCATAAGCTGGGAAATGTTGAGGCAGCATAGATTACGCGATCATTTAGCCGAATTGACTGAGATTGGAACTAATACATGGTGTTCATTGTGCAATAGgTTTTTCCCTACTGTAGAAACTTATCAAAATCATATTCAGTTACATCAAGCAAATTCGGTAACACCACAGAAATTACTTTTCGCAGAATCTACAATGTCTAAGATATCTAAGATGACAGAACGATCAAGGGAAGTTAAAAGAGAGGAGCATTTCTATGAAAATGTAAAGTCTCTTACATGTCCCACTTGTGGAAAGGTTTGCACTCAACAAAGTGCATTATCAAATCACATGCGTACTCATGAACCGAAGAGACACAAATGCGACATTTGTGGTCGATCATTTGGACTTTTCATACGTCTGGCTGCACATAGAGTAACTGAACATAATGTTCAACCAACAATGTTACCAGTTTTATCAGCAGTTGAACAGGAGGAAGCATTAAATGCTGAAAGAGAAGCAAGAGAAGCGAGAGAAGCTAAAACTCGTGGTGCCaagaataaattctattcTGAGATGATGGAGAAAAACAATGTTTTGGTAGATGATGAATCTTCCACAAAACGCAATTCTAGTGGATTTAAAAACGTTGCAAGATGTGGTATTTGTTTGCAATGGTTCAGTGATCATACAACAATGTTAACACATCTCCAAACACATTCGGACAATTcccataaaaatttcatatgccacatatgtaaaaaatcgTTTAAAGAACAATCGCAATTACTCAGGCAtgagACTTGTCATAAACGTCTGACACTCGATAATTCTTCGTTATATACATCTGCTGTTTGCAATAAATCATCGTCTATGGATAAATCGCAACAAAAGATGCATACGTGCACAAGCAAGACACAATTTGGAAAGAAAGTTGCAAAGTCTCTACAGAAGACATCATCTCACGATAACGACAAGAAATACAAATGTTCAAAATGTGACGCATCTTTCGCAAGTTCACAATCACGGAATGCTCATATGAGAATGCATTCCGAAAGCACGCATAACAATACAacgGCGCAAACGCATGAAATTAAAACTGAAAGAGATGACGAACCGATGCCAAAATTGCGACCAGAGACATCGCTAGAATACAATATATCTCCTATCGAACCAAAAATCGAAATCAATGAACAGAGTACACCCCCACCTCTTAAACGGACTCTCATTAAAACTGCTAACggACATCGATGTGGTGTATGTCAATCGCCGTTTGTATCAAGGGAACTAGCAGTAGCGCATTTGAGATCCGCACATCCCGTGATGCCATATCAGTGCCCTTATTGTAAAAAACGCTTTACTACGCAGTACACGTTTACTCATCACATTAAAACGGAGCATCCCGACGAACCCGAGAAATAA
- Protein Sequence
- MCASVNETLFTMDNTIDKWDNACRLCSEERNEMLPIFGDEGLQRRVAQKLRACLPVLVYNTDPLPKQICQFCAARLDDAYEFREYCLNVYRNMHAMLFKYRQLESVQIFLDAMKNSPDPCQAQLCKEKSRAPPPLVPLSAGLPLNESVTPINQVSQDQLQNVCIETLSELPCEVEIKEMNTDPILDDETTFCEPLTKKYKLSEMFDTNMQTKTDIVSIFDTEEENTIFKADYQTKKEEKRTSILEQVLTGNLTMNNHQKLQPKAKLSSEWWCAPCNSYYRTKDSLMKHMQLHCPRIYSCRKCSLSFESVEILAKHEANNHLKVKLDFTESLKDCHKCDRQFISWEMLRQHRLRDHLAELTEIGTNTWCSLCNRFFPTVETYQNHIQLHQANSVTPQKLLFAESTMSKISKMTERSREVKREEHFYENVKSLTCPTCGKVCTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRVTEHNVQPTMLPVLSAVEQEEALNAEREAREAREAKTRGAKNKFYSEMMEKNNVLVDDESSTKRNSSGFKNVARCGICLQWFSDHTTMLTHLQTHSDNSHKNFICHICKKSFKEQSQLLRHETCHKRLTLDNSSLYTSAVCNKSSSMDKSQQKMHTCTSKTQFGKKVAKSLQKTSSHDNDKKYKCSKCDASFASSQSRNAHMRMHSESTHNNTTAQTHEIKTERDDEPMPKLRPETSLEYNISPIEPKIEINEQSTPPPLKRTLIKTANGHRCGVCQSPFVSRELAVAHLRSAHPVMPYQCPYCKKRFTTQYTFTHHIKTEHPDEPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00110023;
- 90% Identity
- iTF_00265221;
- 80% Identity
- -