Cfel013411.1
Basic Information
- Insect
- Camponotus fellah
- Gene Symbol
- -
- Assembly
- GCA_030586385.1
- Location
- JAPIVC010000350.1:2046926-2051102[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.2e-05 0.0024 19.6 0.6 1 21 300 320 300 321 0.94 2 9 0.00042 0.088 14.7 3.3 1 23 380 403 380 403 0.97 3 9 0.00011 0.022 16.6 1.3 1 23 433 455 433 455 0.98 4 9 9.9e-06 0.0021 19.9 1.9 1 23 461 484 461 484 0.96 5 9 1.3e-05 0.0028 19.5 0.4 2 23 491 512 490 512 0.97 6 9 1e-07 2.1e-05 26.1 1.1 1 23 518 540 518 540 0.99 7 9 9.6e-07 0.0002 23.1 1.4 1 23 546 568 546 568 0.98 8 9 2.5e-05 0.0053 18.6 3.5 1 23 574 596 574 596 0.96 9 9 0.00025 0.051 15.5 3.3 2 23 603 625 602 625 0.95
Sequence Information
- Coding Sequence
- ATGGAACCCAAGAATCCGACGATGTTGGAATCCTCCGGCGAGGATGCCATGCTAATCGAGACTGTGAAAAGTATAGTGACGCAGCGAGAACGCAACGAGTCGGAGACCGAAGACGACTTCTTCCTGGTGTCGCAGGATCAGGGCGAGCGATACTCCGGGGAGAACGTCGACGAAACGACACCCCACAAGCACGAGACGAAGGAAATCCTCGCGTGGGTTCACTTCTGCAGGACATGCGCCAATGCGTGCGATAATCTAATACCCATCTTCGAGGGCGAAGGAGTGGAACACGACTTGCCTAGTAAAATACTCAAGTACTTGCCAATACACATATCCGAAAGTGATACGTTGCCATTGAAACTGTGTCATCACTGTGCTGGGACATTGTTGGCCTGGCATGAATTAAGCGAGGGATGTCTAAGTGCGGAGAAGAAACTACTGAAAATACAAGAAACGCTAGAAAATAAACAACAGTATTATCCTGCATCTTTGGATAATTTGGAGGTTTCCACATTAGTTACAACAACAACTCCGACTACTGTATCAAACACAACAAACTCgcaaCCTGATCAGCAAATTGGTACAAAAAATGGAGAACATAGcatagaagaaattaataaatctaacaGGTGTGAGCCAGCAACGGAAAAATCTTTCGTGACATGCCGCTCCTCTCGTAGCGCTGCTCTGCGGACaagtaatgttataataaagtacAAAAACAATCCAGCGAGAAGTTCGACATTGATAGCAGAGAATACTAAAGAAATCTCTGAAACACGCGATTTGCTGGATAACTACAATGTTGTAAGATATGAAAAAGCGGATTCAAACTCCTTAAAGTATCAATCAATACTTCTGCAATCAACAGTACAGAGTAAATCTGTAAAAAAGGATTATATTTGTGATAGCTGTCAACGCGTCTTCAAACGAAAATATCATCTCATACGTCATGTGATGATTTGTAACAAGACCAACGTAGAagatttatcagaaattaaaatgataaaagataaGAGGGAAACAGGTCATAATTTGAATCGGAATTTCAATCATCTGATGGAAGACATCAAGAACAATGATGAAGATCAATATCATGTTCCATCAACAAAATCTTCGGAAAAACGATCCGAAATTTATTCTTGTGAGTATTGCAAACACActacaaaaaagagaaagctATTGAACGCCCATATAAGAGAGATGCATCCCGAATTCACCAAAAGAAGCCGAAAGTCATTCGTAGCCACAGATACGGTATTACGCGCCCGAATGGAACACGATGGTAAGATGTATTATCATTGTGACGAATGTGGAAAGAATTTGAATTCGCCATATACCTTCTACTGGCATTTACGCATTCACACGGGCGAGCGATTGTTCACCTGCCACTTGTGTGGCAAGCGATTTCGCGTAAATCAGGGCCTGGCCCGACACTTAAAGGAGACCCATGCCGGCATCAAGAAAATATCGTGCGACCTGTGTGGCCGCATGTTTTCAACACGACGCAATGTCGAAGATCACAGACGCATTCATACCGGTGAACGGCCATACGTTTGCAACGTGTGCGGCAAAACGTTCAAGCAGAAAGCCTCCCTATTCGTGCACAATCGTACGCACTCGGACGTGTTCCCGTTCAAGTGCAGCTATTGCGGGCAAACCTTTCGCACACGATCGCCGCTGATGGTGCATATTACCAAGCATACCGGCGAAAAGCCGCACGCCTGTGATGTGTGCGGCCGTTGTTTCCGAATCAAGTATGAATTGAAGCGACATCGTCTAATCCATTCTGACGAGAAACCTTGGCATTGTACCGATTGCAATCTCTCATTCCGACAAAAACGTTACTTAGTTAATCATAAGAGACTCAATCATGAACTGCCACGCTGTTTGGACGCCGTGAAGTAA
- Protein Sequence
- MEPKNPTMLESSGEDAMLIETVKSIVTQRERNESETEDDFFLVSQDQGERYSGENVDETTPHKHETKEILAWVHFCRTCANACDNLIPIFEGEGVEHDLPSKILKYLPIHISESDTLPLKLCHHCAGTLLAWHELSEGCLSAEKKLLKIQETLENKQQYYPASLDNLEVSTLVTTTTPTTVSNTTNSQPDQQIGTKNGEHSIEEINKSNRCEPATEKSFVTCRSSRSAALRTSNVIIKYKNNPARSSTLIAENTKEISETRDLLDNYNVVRYEKADSNSLKYQSILLQSTVQSKSVKKDYICDSCQRVFKRKYHLIRHVMICNKTNVEDLSEIKMIKDKRETGHNLNRNFNHLMEDIKNNDEDQYHVPSTKSSEKRSEIYSCEYCKHTTKKRKLLNAHIREMHPEFTKRSRKSFVATDTVLRARMEHDGKMYYHCDECGKNLNSPYTFYWHLRIHTGERLFTCHLCGKRFRVNQGLARHLKETHAGIKKISCDLCGRMFSTRRNVEDHRRIHTGERPYVCNVCGKTFKQKASLFVHNRTHSDVFPFKCSYCGQTFRTRSPLMVHITKHTGEKPHACDVCGRCFRIKYELKRHRLIHSDEKPWHCTDCNLSFRQKRYLVNHKRLNHELPRCLDAVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00867654; iTF_00729537; iTF_01245397; iTF_00110013; iTF_00869088;
- 90% Identity
- -
- 80% Identity
- -