Cfel008957.1
Basic Information
- Insect
- Camponotus fellah
- Gene Symbol
- -
- Assembly
- GCA_030586385.1
- Location
- JAPIVC010000306.1:2522914-2524674[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00011 0.022 16.6 1.5 1 23 73 95 73 95 0.98 2 13 0.00018 0.038 15.9 0.8 1 23 138 161 138 161 0.98 3 13 6.1e-05 0.013 17.4 1.4 3 23 173 193 171 193 0.96 4 13 0.0024 0.51 12.3 1.8 1 23 201 224 201 224 0.95 5 13 0.01 2.1 10.4 4.9 2 23 305 326 305 326 0.98 6 13 0.00056 0.12 14.4 1.4 1 23 335 358 335 358 0.97 7 13 0.02 4.2 9.5 2.0 1 23 372 395 372 395 0.95 8 13 1.3e-06 0.00027 22.6 1.2 1 23 401 424 401 424 0.96 9 13 0.013 2.8 10.0 0.8 3 23 431 452 429 452 0.94 10 13 0.00096 0.2 13.6 0.4 1 23 457 480 457 480 0.97 11 13 1.9e-08 4e-06 28.4 0.4 2 23 487 508 486 508 0.97 12 13 6.3e-07 0.00013 23.6 0.7 1 23 514 536 514 536 0.98 13 13 4e-07 8.3e-05 24.3 0.1 1 23 542 564 542 564 0.98
Sequence Information
- Coding Sequence
- ATGAAACTATGGCAGCATGCCGATGCCGGTGGTAAATTGCGATATTCATTGATACCAGTGTTAGACAACGTCGCTAAAACTGAGGAAAGCATGAGTGTACTTGATGTATCGCCGTTGACCTTCATTAAAGTCGAAGAGATCGAGAACAATCAGAAAAATAGCAATGTCGACAGTTGTAATTCCTCGATACATTTGCACAAGATAGCCATTGACAATTATACCTGCGATAAATGCAGTATGAAATTTCCCATGCAATCTATGCTGAATCGCCACAAGGTAACGCACAATATGCGTTTATGGTTCCGCAAAAGATactcgagagaaaaaaacatgCAACGTTTAAAGATAAACGCTCCACGAAGAGACAGCGGACAGTTAGAAGCGCGAGAGAAACGTTCCGAGGAAGCAAAATATGTTTGCACGTTTtgcaatatgaattttaatagacTAGCGACTTTGGACGCgcatataaagagaaaacataAAGAAGACAAGGTAAATCTGAAGAAACTGGCTTGCATGATCTGCGATTACAGGTGTTCGAGTGAAGCGAATCTAAATAAGCATATGTCTAAACATAGAAGCAAAAGTACGACGAGTTTTGCTTGTAACATGTGTGACTTTGAATGCAAAAGGAGCACTACTTTAGCGTCTCATCTGGCACGAAACCATAAGAAATCTAAGGAAGACCCGGACACATCTACCACAAAGAGACGTAGACTAACAAATACATACGACTACGCGTCTTCTGATCAATTTTGCTCACGAAACAGTCGCGAAACAATCAAGAAGACGTTAATCTCGTACGAAGACTCCAATCTAATAATTAAGGAAGAGGTTTGCCTCGAAGACTGCAAAGAAGAGGGAACCACTGACATCCCGAAGAAACCCAACCAGAAGAATCTTGGCGAACGCTGCGATCTCTGTGATTTTACGTGCGCGAAGAAGAGTACGTTGTACTCGCATAAACGTCGTCACAAGCTGGAGGACACCGGCGAGGTATACGCGTGCAACGAATGCGGTTTCAAGACCGGCAAGAAGTCGTCGTTGTACTCTCACATAAAACGCAAGCACAAGGAGCCGCGAGACGGCTGCGACGCACAGCCAGAACTCTTCTATTGCAGCCAGTGCGACTACAAGAACAAGAACAAGTACGAACTAAAGATACACGTCGCGCGCAAGCACTCGGACGACTTCAAGTTCTCCTGCGAGACCTGCGGCAAGAAGTTCAAGGTCAAGGGGGATCTGACGAATCACATACGCTTCAGCCACCGAGAACAGCCGGTGATCTGCGACGTTTGCGGCAAGACCTGTCTCAACAGCAACTCTCTATACGTGCATCAGAAGTTCGCGCATTACAAGGCCAAGTACGAGTGTCAGATATGCAAGAGGCGAATGGTGAGCCAGGAGAACCTCGACGAGCACATGCTCAGGCAGCACGAGCGCAGGGAGAATGTGGTGTGCGAGGAGTGCGGCAAGACGTTCTCGCGGAACAGTAGACTGAAAGTGCACATGAGGATCCATACCGGGGACAAGCCGTACAGCTGCACCGTCTGCAATAAGTCCTTCGCTCGCAGGACCGCTCTCAAGCAGCATCTGCTCATCCATACCGGCATTAGGCCGTACGTGTGCGATATTTGCGGCAAGGCCTTCACGCAGAAACCAGGCCTGATCAGCCACAGGAAATCGCATCCTGGCTCTCATCCACCGTTGCCACGCGTCCTCATCGATCACATCTTGAATGATGTCATGAACGCTTGA
- Protein Sequence
- MKLWQHADAGGKLRYSLIPVLDNVAKTEESMSVLDVSPLTFIKVEEIENNQKNSNVDSCNSSIHLHKIAIDNYTCDKCSMKFPMQSMLNRHKVTHNMRLWFRKRYSREKNMQRLKINAPRRDSGQLEAREKRSEEAKYVCTFCNMNFNRLATLDAHIKRKHKEDKVNLKKLACMICDYRCSSEANLNKHMSKHRSKSTTSFACNMCDFECKRSTTLASHLARNHKKSKEDPDTSTTKRRRLTNTYDYASSDQFCSRNSRETIKKTLISYEDSNLIIKEEVCLEDCKEEGTTDIPKKPNQKNLGERCDLCDFTCAKKSTLYSHKRRHKLEDTGEVYACNECGFKTGKKSSLYSHIKRKHKEPRDGCDAQPELFYCSQCDYKNKNKYELKIHVARKHSDDFKFSCETCGKKFKVKGDLTNHIRFSHREQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQICKRRMVSQENLDEHMLRQHERRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYSCTVCNKSFARRTALKQHLLIHTGIRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729517;
- 90% Identity
- -
- 80% Identity
- -