Basic Information

Gene Symbol
JARID2
Assembly
GCA_030586385.1
Location
JAPIVC010000672.1:881307-890094[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 8.2 3.8e+04 -3.4 0.1 54 82 150 177 126 178 0.48
2 2 1e-22 4.8e-19 70.0 0.1 6 89 1347 1428 1343 1428 0.94

Sequence Information

Coding Sequence
ATGGTTCTGAATCGTAACgacaagagaaagaagaaggaagGGGATCTGGTGGATCTTATGGAACCACTTTCAGGATCTCCAAAGAGGACCAAAGTTCACGCACAAAGAAAGTTTGCACAAGGTGCAAATACAGTGTTCAATACATCACCTACACCTGTCAAAGACAAGGAGAAAACTAAACCTGCCACGATTACAGAATTAATAACTCATAAACGCCCAAATACTGAGGACTTTCTAACATTTTTATGCTTTAGAGgAACATCCATTTTACCAgctagtttaaattttttcaatgttgGTAATAAAAAGGAGAAACAAAGGCCTACATCAGCTCGTACTTCTACGGATAAAGTATCATCCTGTACCAGTACCTCTACAGAAGTCCAGAAACAAGACACAGGCCAGAAAAATGTGACAAAAGTTAAACCTGTTGTCCCAGACAAAAAAAAAGTGCCTACCACGATACATAAAAGCATTACCAAACTTAAAACAGCAACGTCTACAGTTCAAGcgcttaaaaagaaatatcaagaGCAACGCCTTGCTAAGCAAaggattaagaataaattcaaaGCCACATGTGTTATGAGAACAAGATCATGTACAGAGAGATCTATGATGAAGGCTGGCATTCAATTGGCACCGAGAAAATTTTTACCTAGAATTGAAACAAAGAGACACGGCTTGAGAAGTGGTGTACTGCCGGATAAAGGCAACAAATCTTTGTTGAAGACAAAAATCGTGTCGCCCAAACCAAAGAAGaaagttaatccaaaattgaaaaataatgatgtatCGTATACAGATATGTCTGAGGAGGAGCATGATGAAAAGGATGACGAGGAAGAAGAGTTACCTGTGGAAAAATCGACCTCGCAGATAAAACGCAACATACAAAGAGGAAATATTCAGAAAAAGATTTGTACTAGGAGCAAATCGGAAATGAGGAGAGTCACAAGATCGTACAGCGGCATAATCTCCTCGCAAAATCCCTCTAGAAGGCCTACCAGAAAAACTAAAGAAGCAGCCGCTCTGTACATGGAAATTCTTGGTAGGAAATTAGTAAGCCCAGATCTAGAGAATGAAGATAATGTTTCGGTCGAGAGTTTTCCCGAATTGCCGAATGCTCGTAGGATAGCGCAAACGGAAAATGAGCTTAAAGCCAAAGTAAAACAGACTAATACGAAAGCTGTTAATAaaactaaagattctaaagtTAATTCGTTCAACAGTAACAATAATAAGCGATTGGATAagagcaaaaataataaattaattctaaaaagcAAACGTCTAATGAGAGTGCAGAGATATTGCGAGGAAGATAGCGAGGAAGAGTCTGAAAGCTCAGTGGAAACGAATAATACGAGACCTATTACCAGACAGAGTCTTGGAAAACTTGACAAACCGATCGGCAGGAGTCTCAGATCGTCCTCCAAGAGTACAACTGCACAATCAGAAGTACAACCTAACACGAATAACAAACCGAAGATTCAAGTTCAAAGTTGTATGAAATCTTCTAAGGAAAAATTTGTGATGAAACGTAAACGTgatcaaaatttatctaaaacgTCATCGGATAAAATGAGCGGATCGAAACAGAAAAATCTGAAGAATGATCAAAACAAAAATGCAGAATCCGAAGAAGAAACATTGGGAATGTtgcttaataaaatgaaaaagaaaaaagagaacgaTGATGAAGAGGAACGAACTTTAGATAATGTTAATAACGTGAAAAATGGCGAGGCAGTTTCCAACGATGCGCAAAACACGCACACGAAAGCAGATTTGCCAAAAGTATCAGATGATGAGGAATCGTTTCGCGGATTTACCAAAAAGGCGATATCGAAAGTTTTGAATTCGTGTCACGctaatgttaatttactaaaatcagaATCAAATGACAAACTAAACTTGCTGAAAGCGTTAGATGTTCCGGATCAAACAACGACAAATCAGAACAAAACCTTGCAAGAAAATAACGAAGAAAAGACCTCATTGATCCAGGCTGATTCTTCAGCAAATATGTTAAACGACGaatgtaatatatctatacaaGATCAAAAATCGATATTGGATCTATCCCTCAAGACGCAAAACTCCTTATTACCATCGATTGAACAGGTACAGAGTAAAAAGTGCAATCACGAGAACGAGGTCTCTCCTAATCTCATAGATATGCCGTTGTCGACTCTTCATACGAGAAAGGAACGGGTGAATATGTCGACGGAGCAAATAGAAAAGTGGCTGAACGAAAGCTCACTTGCCAAAGAAGAGAGCAAGCTGGAGATGGAGAATGTTGTCACCTTCAAATACGAGCCCGTGGAAAAATTGAAGGCAGACTCCTCGCATCTATCTATCTCGACAAAAATCCAGCACCTGGTGCGTCCTGTTAACGTAACGCTTTCGAAGCTAACGGATAAAATGAGCTTGAAGGACCGTACCACAATCGTCCAGAGTAGAAATATAATGCCAGTAGCGTCCAATGTGCATAATGTCGAGGCGAAGCAGCAGAATgtcgcgaataaaaataagactAATACCGAATTTGTGAAGgaaattgtcaaaaataaatgCGAGAAGACCAGCAAGGACCCTACTCTCGTCGAAGACACCAGCGATACCGTGTCGAAGTCGGACCAAAACTCGACGGACGGCTCTGTAGAGAAGAAATCCCCGGcggagaagaaaatatttcaaccgCGAAAATCCTTCATACCCAAGGTTAAACGCAAACTGGTCGTTCCGAACGCGAATGCATTTTCACCGGAGAACGAGAGTAGCGTTTACGCGTTCGAGAGCGACACCGAGGTTCCCATTAGCACGCCCTTCAGAAGAAAGACCAAGGATACCGCGAAATTAACCGCTCCAGGCGCGGAGGGCAAAATCGCtgataaatcaaactttaaaAGTCCCGAAACGTTAACGAACGTCAAGGAGGAACCGCCGATCGAAACGCTCGTGAAGAAGGAACAGGAGACCCAAGGCCCGATAAACTCAACGAGCACCACCCTGAACAAGTTCGAGCTGCCTAAGAATTTCGCGGGCTTGACCAACGTCCAAGTATTGCCGCTCGATAAGCTCACTACAAGTTGGAGCAACGTCAATTGCAGCGCTTCTATAGCCGTGCAGGTGAACCTCGACGAGACCACGCAAGAGCAGCAGAATGAGGCGAGTCAGCAGAGGAGCACCGAGATATCTACTCAGACCGAAACGAGCAACGAGAACGATGACGATAACGATGGCCAGCTATTTTACATTCCATTGCAAGCTGTGACGAGAAGCGGCCCGAACTTGGTACAGGGGCAACAGTTGATTCAAGGCGTCGCCGTTAAACTCGGCACGGAGGGACCGACCGGACCTAATCAGAGAGTACTGCTTCGGGCTAAATTGGTCACCAAGCCACCGTTATCCGTAGCTCGTTGTCCACCGATAGGAACGGTACAGCCGACGACGCGCACGCCACCGAATCCCACGGCTATCACGGTGGATCAGCAGCAAGTTCCGTCGACCTCGACGACCACAACTGTGTCGGCCGCGATGGCAAGTACGCCGGAGACCCAGCCGAGCTCACCCGTGAAGAATAATGACATCTCGGTGGCAAACTTAAGTCGGCCAAATGTTGGTACAAGCGCCAATAATTTGGATAAAACAAAGTCTCCGAAATTATCTAGAGAGAGGAAAACTTCTATAGATTCGACAAAAAGTGGCAAgagGACGCAAACGAAATCCAAACAGAAAGTATCTGAATTGTATTCTTCAAGTAATAACACTACGTTCCCAAGTGcgaaaaacacaaataatgaGGCTCGTGTAGTCGAGGCACCAACGTTTCATCCAACGGAGAAAGATTTCCAGGATCCTTTGGAATATATAGACAAAATAAGACCGGTTGCCGAGAAGTTTGGAATATGTAGAGTCGTGCCTCCGCcgaattttaaaCCAGAATGCAAAGTATCTGATGACATGAGATTCACCGCTTATAATCAGTATGTGCATCGCATGCTCCATAGATGGGGTCCtaatgtaaaagaaatgatggctattaagaaatatttagccACTCAGAGTATTACTTTGACTCAACCACCATggatTGGTGGAATGGAAGTTGATTTACCTCACTTGTATCAAACAGTTCAAAATTTGGGTGGATTGAAAGaagttattgaaaaaaagaaatggcaAAAGGTAGCAGATGGCATGAAGATACCTAAATCTGCACAAGATCGCGTTACCAAATTAGATGATATTtactgcaaatatttattaccatATGATACATTATCCCCAGAGGAACgcgaaaaattgtttgatgaaGTTGAAGCTGAATGGACGAGAAAGGAAAGCAAAACTTTGCAAAGGCAAGAAGCATCATCCAATGATAATGATGAGGAAGAAGACGATGACAGTTCCGATGAGATTGAGGAATGTATTGTGAAGggaAGAAATATGCCGTTGAACGCCTTTTACCGAATCGCCCGAAATACACAACGTATGTGGTTCGGCGAAAATCAACGAGGAAACGAAGCCGAAGGCGCTTCGGCCGACGAGGTGGAGAGTGCGTTTTGGAAACATGTTGCCGAAAGGAAACGTCACGTTTGCGTACACGCGGCGAGCATCGATTCAAGCGGTCGTGGATTTGGTTTTTCCGTTGCCAAAAACAGCCCATTCGCCAGACACCCTTGGAATCTCAAAGTGCTCACTAATAATGCCGGATCGGTATTGAGAGCCTTGGGCCCGTTAATGGGTGTGACTGTGCCAACGCTTCACGTGGGCATGTTGTTTAGCGCTTGTTGCTGGTATCGCGATCCGCATGGTCTGCCATGGATAGAATATCTACACACGGGTGCTAAGAAAATTTGGTACGGGATACCTGACGAGCATAACAACAATTTCCAGAAAGCGCTCTCGAAGATGGTACCACGATATTGTAAAAGTAAGACTATATGGTTACCTTCCGACACTGCCATGGTCCCACCGGAATTATTAGTCAGTAACAATGTACCGTTATGTAAGACTGTCCAAGAGCCCGGAcagtttataattgtatttccgAAAGCATTCACGTCAAGCATATGCACCGGTTACGTTGTATCCGAAAGTGTGTATTTCGCACAACCATCCTGGTTAGAAACAGCCGAGCAAGTTTTCAAGGACATACAAGACAGTTGCGAACCCTCTATATTTTCATTCgagagattattatttaatattattaacgataCCAGATctcatatagatatattaaaacagATATTACCAAGCGTGATCAAGATCCGTGAGAAGGAGTTAGATTATCGTAAACAATTGGAAAATACGGGTCTTAACAATAGAGAAAGATTGCCTCTGCCAGATAGTGGAAAAGGGAAGAAAGGGAAAAAAGTGAAAGAGGATGATGGTGATTTCGAATGTGAGACATGTAGAGCCAATTTGTTTGTCTCATTGGTAAACAATTCGCAAGATGATAGTGTCTATTGTTTGCCGCACGCATTGCAATTAATCAATCATAAAAAGCAAATTCTGAAACATTGCACTTTAATGTATACCTACGACGAAGACGAATTAGATGGATTGATTAGCAAACTGGAACACAGAATTGAAGCCAAATCTAAAAAAActaatcaaataaaacaaaataaataa
Protein Sequence
MVLNRNDKRKKKEGDLVDLMEPLSGSPKRTKVHAQRKFAQGANTVFNTSPTPVKDKEKTKPATITELITHKRPNTEDFLTFLCFRGTSILPASLNFFNVGNKKEKQRPTSARTSTDKVSSCTSTSTEVQKQDTGQKNVTKVKPVVPDKKKVPTTIHKSITKLKTATSTVQALKKKYQEQRLAKQRIKNKFKATCVMRTRSCTERSMMKAGIQLAPRKFLPRIETKRHGLRSGVLPDKGNKSLLKTKIVSPKPKKKVNPKLKNNDVSYTDMSEEEHDEKDDEEEELPVEKSTSQIKRNIQRGNIQKKICTRSKSEMRRVTRSYSGIISSQNPSRRPTRKTKEAAALYMEILGRKLVSPDLENEDNVSVESFPELPNARRIAQTENELKAKVKQTNTKAVNKTKDSKVNSFNSNNNKRLDKSKNNKLILKSKRLMRVQRYCEEDSEEESESSVETNNTRPITRQSLGKLDKPIGRSLRSSSKSTTAQSEVQPNTNNKPKIQVQSCMKSSKEKFVMKRKRDQNLSKTSSDKMSGSKQKNLKNDQNKNAESEEETLGMLLNKMKKKKENDDEEERTLDNVNNVKNGEAVSNDAQNTHTKADLPKVSDDEESFRGFTKKAISKVLNSCHANVNLLKSESNDKLNLLKALDVPDQTTTNQNKTLQENNEEKTSLIQADSSANMLNDECNISIQDQKSILDLSLKTQNSLLPSIEQVQSKKCNHENEVSPNLIDMPLSTLHTRKERVNMSTEQIEKWLNESSLAKEESKLEMENVVTFKYEPVEKLKADSSHLSISTKIQHLVRPVNVTLSKLTDKMSLKDRTTIVQSRNIMPVASNVHNVEAKQQNVANKNKTNTEFVKEIVKNKCEKTSKDPTLVEDTSDTVSKSDQNSTDGSVEKKSPAEKKIFQPRKSFIPKVKRKLVVPNANAFSPENESSVYAFESDTEVPISTPFRRKTKDTAKLTAPGAEGKIADKSNFKSPETLTNVKEEPPIETLVKKEQETQGPINSTSTTLNKFELPKNFAGLTNVQVLPLDKLTTSWSNVNCSASIAVQVNLDETTQEQQNEASQQRSTEISTQTETSNENDDDNDGQLFYIPLQAVTRSGPNLVQGQQLIQGVAVKLGTEGPTGPNQRVLLRAKLVTKPPLSVARCPPIGTVQPTTRTPPNPTAITVDQQQVPSTSTTTTVSAAMASTPETQPSSPVKNNDISVANLSRPNVGTSANNLDKTKSPKLSRERKTSIDSTKSGKRTQTKSKQKVSELYSSSNNTTFPSAKNTNNEARVVEAPTFHPTEKDFQDPLEYIDKIRPVAEKFGICRVVPPPNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLTQPPWIGGMEVDLPHLYQTVQNLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEEREKLFDEVEAEWTRKESKTLQRQEASSNDNDEEEDDDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQRGNEAEGASADEVESAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFQKALSKMVPRYCKSKTIWLPSDTAMVPPELLVSNNVPLCKTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFKDIQDSCEPSIFSFERLLFNIINDTRSHIDILKQILPSVIKIREKELDYRKQLENTGLNNRERLPLPDSGKGKKGKKVKEDDGDFECETCRANLFVSLVNNSQDDSVYCLPHALQLINHKKQILKHCTLMYTYDEDELDGLISKLEHRIEAKSKKTNQIKQNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01423428;
90% Identity
iTF_00264799;
80% Identity
-