Cson014431.1
Basic Information
- Insect
- Campoletis sonorensis
- Gene Symbol
- -
- Assembly
- GCA_013761285.1
- Location
- JACEOJ010000144.1:4201-8845[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.7e-06 0.00038 20.9 3.5 1 23 568 591 568 591 0.98 2 12 0.16 13 6.7 0.4 1 23 606 629 606 629 0.95 3 12 0.0034 0.28 11.9 0.2 1 23 665 688 665 688 0.96 4 12 0.11 8.8 7.2 3.1 1 20 700 719 700 724 0.91 5 12 0.2 16 6.4 2.7 1 10 738 747 738 760 0.81 6 12 0.097 7.9 7.3 0.3 1 23 769 792 769 792 0.93 7 12 3.6e-06 0.00029 21.3 0.9 1 23 807 829 807 829 0.98 8 12 2.5e-06 0.00021 21.8 0.5 1 23 835 857 835 857 0.99 9 12 0.091 7.4 7.4 4.1 1 23 863 885 863 885 0.97 10 12 0.48 39 5.2 6.2 1 23 891 913 891 913 0.92 11 12 2.5e-06 0.0002 21.8 4.5 1 23 919 941 919 941 0.99 12 12 6.1e-06 0.0005 20.6 2.5 1 23 947 970 947 970 0.97
Sequence Information
- Coding Sequence
- ATGCTGACGTTGATCCTCCAAACTCAAGAGGGGCATCAAATTGAATTGAATATTCAGCCAGAGGATACTTTTAGAGATTTGAAAAATCAATTTGCGCATCATGAGCTCGTTGGTCTGTCAGATTCGCTGCAACAGTTAATAACTGGCGGTGCTAGCGTTTTAGAAAACACCAAGATATTCGACTTTGTCACTGGCAGTGCTCAGGAATGGTTAGGTACAAATGCATCGGTGGCAGAGCCTCTATCTTCTCAGTCTACGAGGATAGATGATCAATTGAAAGAATGCTGCCCTGGAGGTAGTGTCAATAACCAAGCCACGATGCCTGAACAACCTTTTTTTCCATTGCTGGTGGATCAGAATAGGCTGTCCGGCTGTTCAACGGAAGCAGGAAGCGTCGAGCCATACAATAAGATTTTTTCTTCCGACGTGGAAGAATGCCAAAGGACATTTTTATGCGGTAGCCATAACAACCAAGAATCGTCGATTTTACTTGAGGATGGATCCTCTCAACAGACACCACTGTTGACATTGCAAAAACCCAAAAATCAGCGGCTCAGATCAAACGCAACCGAAGAAATCATTTCGACCAAAGATGTACCCGATGAAGAAGAAGAAGAAGAAAAGTCAAATGTAACTAATGATGCAGTAATCGATAGTAAAAATTGTTCGTTCGACGTTTTAAAGTCGGAAGAAAATTTTGAACACCCTGGAATTCTCTGTCGTTTATGCGGTAAACTTGCCGTTAATCCTATTCACATGTACGCCGTAAAGACAGACAATATTGAGGAAGAATTCAGCCTCGCGGATAAAATTAATTTGTGCCTTCCCGTAACGATCACGATTACGGATCCATTGCCAAAGCAGATATGCCAAGAATGTGATGTGAAATTGAACGTGTGTCACGACCTAGCGTTAACGTCTTTACAAGCGGAAGACAAACTTAAAAGATTGTTGCGAAAGAAAAAGCTTTGTGTAGACGTTAATGCTGAGAATTGTCCTTTGTGTGTCGAGGGTGGGATGAAAATGGTAAAAAGAAGTGGCATATATCGAAAAGAAGATTTGAAAAATAGTTTGAGGCCGGTGTCGCCACCAAAAAATGAGGAAAAAATAACAACGAGCAGAACGAAAGTAAAATTACCCATAACATTGGATAATTTAATAGACGAATCTAACAACACTACGAAGCTCGAGTGTGTGCGCAAGTCTGAAGATTCTCACGATATTACGTTATCACTGCCGACCGTTCAATCTGATTGTTCGGTAAATTGCTCAAAACTCGTCGATTCTACAGAGAGGGAGGTCAAAAGTGACGATTGTCGAGTTAACAATCGAAGTTCATCTCGCAAATGTGTTATTTCTAAGTCAGGAGAAGGACCACCAGCAGAAACATCTTTCACGAATGCTCATGAGCTGGAGCTTGAAAGTCGTCAGTGTCTCACTACGGTCGTCGAAGAAAGCTCTTCGTCGTCGAATAATTCGACTGGAATTCGTAGCGATAATTGCAGCGGAATATTGGCGAGTGAAGAAATTTCACAAAATCATGATTGTTCGGGGATCAAAATAGAAAAAGTTCCAACGAATATCGCAGGGGATTATTTTGGAACGAACGAGCTCAAAAATAGAGGTTCCATAAAGATGAGGGATGACGAGGAGGTGTCAGCGCAGAAAGGCGAGGGAGATGAGGAGGTAGAACAAGTTCGTTACTCGTGCAAATTTTGTAACAAGGAATTCACGCAAAAGACGAGTCTCGAGAAGCATACGAGGTCGTTGCACAACGAGTCGTTAAAAGAATTGTTGCAAGTACCAAAGTATTGTTACAAGTGTAAAGTTTGTTGCGAAGCTTTTGCACGAGAAAAAGAAGCCGAGGCTCACGCGAGAGCGAAGCATAATTTGTTGTCTTTCTGCAACGAGGGAAAGGAGGAGGACGAGGAGAATATTCATTGTGGGCAGAGCGAGCAGCTGCTGATTGAGCAGTTGATCGTAACGTGTTTGTATGTGTGCGAATATTGCGAGCTAAGGTTCACAGTCCCAAGCGCTGTTCACGAACACCGAGAAATGGAACATTCTTCCAACAGCAGCAAGAGCAGGCTCAATAAATATAGTTGCCCAATGTGTAATTCAACATTTGATTCACATCGAGAATTAACGGGGCACAAAACTCACCGTTCGCATCGTAAATCACTGGAGGATAATTTTGGGATAAAGCAATTATACGTTTGTAAATATTGCGACAAAAGTTTTTTACATCATACGAGTCACGTGAGTCACGTGCTGCAACATAGTCGAACAGATCCTAGGCGACCCTATCTCTGTCGAGTGTGCAATCTCAATTTTGCCAATTACCGAGAGATTTTGAGGCACCGAAACGAGGCGCATCCTTACTACCAATCGCTCCTTCATGAGAGATCAAGTTTTGTGTACAATTGTCAATATTGTCGTAAAGAATTTAGCCAAGAGGTTGCCTTAATGAAACACATAAGAATGCACACGGGTGAGCGTCCATACAAATGTACCATTTGTGCCAAAGGATTCTCTCAGAGTTCCGGCCTCTATACCCATCTCCGGGTTCATTCCGATGTTAGGCCGTACGCGTGTACCAAATGTTCTCGTACCTTCAAAATCAAGGGTGATTGCGACAATCACATGAAAAAACACGCCGGCAATCGTCCTTACAAGTGCGATTTTTGCAACAAGGCATTTATGACGCAGCACGTTTATAGTCAACATTGCAAAATTCATACGAATGAGAGACCCTATAAATGTCATCTCTGTGGACAAGCTTTTCGGAGGTCCCACGTACTTACCGTTCACATGAGACGACACACCGGTGAGAAACCACATGTCTGCGACATGTGTCCAAAAACTTATCGTCAACGTGGTGATCTTTCCAAGCATCGAAGAACCCAGCACGGTATAAGCGGCAGTAGTGGTGTTGCTGGCATTACAAACATGACCAAAATCAATCCTACCTTCCAATCCTGCGGCAATGATCAGCGAAATGATCAGCAGCAGCACGATCCTGGCTTGGATCATTTTCCAATAACGAGTAAACTCCTTGCTGCTGCAGATATTCGTGGGGGTGCTAATTCTGGTGATACTTTCATTTTGCCACTATGA
- Protein Sequence
- MLTLILQTQEGHQIELNIQPEDTFRDLKNQFAHHELVGLSDSLQQLITGGASVLENTKIFDFVTGSAQEWLGTNASVAEPLSSQSTRIDDQLKECCPGGSVNNQATMPEQPFFPLLVDQNRLSGCSTEAGSVEPYNKIFSSDVEECQRTFLCGSHNNQESSILLEDGSSQQTPLLTLQKPKNQRLRSNATEEIISTKDVPDEEEEEEKSNVTNDAVIDSKNCSFDVLKSEENFEHPGILCRLCGKLAVNPIHMYAVKTDNIEEEFSLADKINLCLPVTITITDPLPKQICQECDVKLNVCHDLALTSLQAEDKLKRLLRKKKLCVDVNAENCPLCVEGGMKMVKRSGIYRKEDLKNSLRPVSPPKNEEKITTSRTKVKLPITLDNLIDESNNTTKLECVRKSEDSHDITLSLPTVQSDCSVNCSKLVDSTEREVKSDDCRVNNRSSSRKCVISKSGEGPPAETSFTNAHELELESRQCLTTVVEESSSSSNNSTGIRSDNCSGILASEEISQNHDCSGIKIEKVPTNIAGDYFGTNELKNRGSIKMRDDEEVSAQKGEGDEEVEQVRYSCKFCNKEFTQKTSLEKHTRSLHNESLKELLQVPKYCYKCKVCCEAFAREKEAEAHARAKHNLLSFCNEGKEEDEENIHCGQSEQLLIEQLIVTCLYVCEYCELRFTVPSAVHEHREMEHSSNSSKSRLNKYSCPMCNSTFDSHRELTGHKTHRSHRKSLEDNFGIKQLYVCKYCDKSFLHHTSHVSHVLQHSRTDPRRPYLCRVCNLNFANYREILRHRNEAHPYYQSLLHERSSFVYNCQYCRKEFSQEVALMKHIRMHTGERPYKCTICAKGFSQSSGLYTHLRVHSDVRPYACTKCSRTFKIKGDCDNHMKKHAGNRPYKCDFCNKAFMTQHVYSQHCKIHTNERPYKCHLCGQAFRRSHVLTVHMRRHTGEKPHVCDMCPKTYRQRGDLSKHRRTQHGISGSSGVAGITNMTKINPTFQSCGNDQRNDQQQHDPGLDHFPITSKLLAAADIRGGANSGDTFILPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00262885;
- 90% Identity
- iTF_00262885;
- 80% Identity
- -