Cson014054.1
Basic Information
- Insect
- Campoletis sonorensis
- Gene Symbol
- -
- Assembly
- GCA_013761285.1
- Location
- JACEOJ010000143.1:1348266-1351765[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.022 1.8 9.4 2.5 3 23 462 484 461 484 0.94 2 10 0.012 0.98 10.2 2.7 1 23 490 514 490 514 0.98 3 10 0.00062 0.051 14.3 0.2 1 23 520 544 520 544 0.93 4 10 0.0025 0.21 12.3 0.9 3 23 552 574 550 574 0.92 5 10 0.0017 0.14 12.9 2.5 1 21 581 603 581 605 0.95 6 10 0.0008 0.066 13.9 0.4 2 23 613 636 612 636 0.95 7 10 1.2e-05 0.00096 19.7 1.7 1 23 642 666 642 666 0.98 8 10 8.4e-06 0.00068 20.1 0.5 1 23 672 696 672 696 0.96 9 10 0.00033 0.027 15.1 2.4 1 23 702 724 702 724 0.99 10 10 5.2e-05 0.0042 17.6 0.1 1 23 803 828 803 828 0.93
Sequence Information
- Coding Sequence
- ATGTCTCGTCAAGCATGCAAACCGAAACAAGTACCGCGAATATTCCAACACCGGAATCAATCGGCTCGGAGCGTCGTGAGAAACGTTGCTCGGACATCGTCGGAGTCATCGTACGTCGAGGGCGGTATCGTAAATCCACTAGCTTCATCGTATTCCAATTTTAGCCAAGATCCAACTGACAGTTGTAACAAACATGTCGATGTTCAGAGAAAAAAACGTAGTCGCAAACTCCCAACAGCAAATGTCGATTATTCGACAAAAACATTTCTAAACACTTCGATTTCTATCGAAGATGCCAAAGCTGGAGAATCGTTATTAGACAAAAATACTTCCAACGCAGTTGACGATATCGAAAAATGGCTGAAAACGCGAACCGAGTCAGTTTCGAGTATAGAACTCGACTCGATGAAATCCGTCGTCGAAGCAGAGACCGAGGAGGATCGAAGCGTAGGCGTAGATGGTTATCTCGCCGATGATCTACCCCATGCTTTCCTTGGCAAGACTCCGGATGGTTTATCCATTGATATTGATCTTTCGGACAAAAAATTGAATCTCGACTATGATCCATTACTCAGAGAGCTCCAGGGCCACAAATTATTGGAAGTTTGCGAGAAAAATGATGATTTCATAATGCCAGAGTTTCGGCTCGATCATCTCGATCCTTTAGTTCTTTCGCCTCATGATATGATGGTTGCCGGTGAAATTTTGCCCTCCGCTAGTCATCCCGCTGCTTTGCCCGTAACTACGCATCTGGAGAATAACGTTGCGCGCAACGAAATCTCAAAGGACTCTGAGGCGGAAGAACCTGTTGACAAGCCTATACAGGTGGATTATAATTTGTCGGAAGATCTGGAAGACTTTGGAGAAACAGAGGGCGAGGATGACTTATCGAACGGTCATAAAATGGAATCACTGAGTCAACAAATAATCCAGCCAGAAATAATTCAAATTGTTGAAGAGACACAGACCTTCGACGACACGATAAAAGGGAGAACAAAGTTGAAGCCAAGAATAATGAAGCAAAAACGACAAATTAGACCCAAACCAGTGGAAAATGAAATAACGTTTTTGGGAGAACCTTGCCACATAGATGGGAAGGACAGTGTAATGGCTGTGGTTGCTATATCGACCGACAAAATTTCAAACATGACACAAATTGTGATAAATACTGGTATGGATGAACAGATATACCAGGGAAAAACGTCTGAGCTTATTGAAGCAACTGAAAATTTTCCTAAAATCTCCAAACTCGAAATGGACAATGGAGGATTTACAAGAGACAGACCTCATGAGAGAATGGTTTCCAAGGCTCTGGAAGAACTTGGAATAACTGACGAATCCTTGGAACCGGCATTAGTTAACGAAAGCGGCAGAATTTGGCTATGTCCCAGGGACGAATGCAATCGAGAATTCTGTAAATTACACGCTCTCAAAACTCACTTGCTGGCTCATTTCGGCGTGCGACCGTTCAAGTGCGACTACGAAGGTTGTACATGGGCTTTTCATTCGGAATTCAAATTGAAGCGTCACAAAGAAACTCATCTGAAACGGAAAAATTTTGCGTGCGAGGTGCCCGGTTGCAACCGTCGTTTTACAACGATCTACAATCTTTGGAGTCACGAAAAATTGCATACACGACCGAATCGAATAGTGTGTCAGGTGCCGAATTGTCACGAGAAGTTTCAAACGAAACGAGCTTTGGAATTGCACATGAAAAATCACGATCAGAGTCACGCTCCGTACATGTGCAACCAAGAGGGTTGTGGCAAGCGTTATTATACGAGTAACGCGTTGACGTCGCACCAAAGATGTCACAATTACAAAGAGATCGATGTAAAATGTTCGTGGCCAGGTTGTGGAAAGATATTCGACAAACCGTGTCGTTTGAAGGCACACGTGAGATCGCACACCGGAAGTAAACCTTACACATGTACTTATCAGGATTGCTCATGGGCATTTCCCTCGTCGAGCAAGCTCAAAAGACACCAAAAAAAGCACACGAACGAAAGAAAGTTCATTTGTAACGTCGAAGGTTGTGGCAAAGCGTTTATGCGCTCGGAACATCTCAAGGAGCATTTATTGACTCACGCCGGTGGTGGATATTTTCAATGTTACATGTGCGACGCACATTTCTCAGCAAAAAGCAGTTTATACGTTCACATAAAAAAGCATCAGTTGAAAGAATCTGTAAATACTATCACCGACAATGTCGTAGAAGTTCCTGAACAACAGATCCATGGTGCTGAAGATACGGAGGAAAATTTCATCACGAAAATCGTCAGTATCAACGATGACGTGCCTGGTGCATCGATTCACGAAGGAGGGCTCGAAAATATAAACACTTTACAGTCCCAGAGCATTGAAATTTCAGCAAATACGGTGAAAAAAGAACATGAGGATTTTTCGTACAGTTGTGGCATGGAGGGCTGTGGACAATCATTCAAAACACTATCGAGTCTGGCGAGTCACATGATCGCGACCCACGAAAGCTCGATCGTCGAAGATTACGAATCACCCATTGGAATCTCGACTCCTTCTGATGCTTCGGATCTTGATTATATTCTTTACGCTAATCCGAGTGTTAATTCGAAAAATATGAGTCGAGCGATGTTGCTCGACTCTTGTGACGCCATTATTATGAACGAATCACCGAAAAACGTGGCTTGTTTGCCAGAACCCGAACCACCGCCTATCAACACTTCCTCGGCTTCCCCTGGTCCGCCTTCTGTTGCTGTATCTTCCGTCGAGGGAAATTTAAGACTACCTGAAAGTTCCTATCGCATTTCCGGTGACAAACAATCGTTGGAACATCAACAAACACGCGTTAGAAAAAATTGCCAAGGTTCAGCAAGAACTGGACTAACTCGCGAGGACGTGTTGAAATTGAAGGCCAAAATAAATGGCACGGAAACGACAAACGTCGGGGCTACCGATGTTGTTCTTGGTGAAGCTAATCTCAACGAGGGTCTCTTGCTCACCGAAGAACTACCCTCAATGTTTTATCAAGATGACATTGTAGGAACCGAGTGCCAAATTTTGTTACTCGACGGTGGAAATTCGGAAAATCCTATTGATTTACGCGGCCTCGAGTAA
- Protein Sequence
- MSRQACKPKQVPRIFQHRNQSARSVVRNVARTSSESSYVEGGIVNPLASSYSNFSQDPTDSCNKHVDVQRKKRSRKLPTANVDYSTKTFLNTSISIEDAKAGESLLDKNTSNAVDDIEKWLKTRTESVSSIELDSMKSVVEAETEEDRSVGVDGYLADDLPHAFLGKTPDGLSIDIDLSDKKLNLDYDPLLRELQGHKLLEVCEKNDDFIMPEFRLDHLDPLVLSPHDMMVAGEILPSASHPAALPVTTHLENNVARNEISKDSEAEEPVDKPIQVDYNLSEDLEDFGETEGEDDLSNGHKMESLSQQIIQPEIIQIVEETQTFDDTIKGRTKLKPRIMKQKRQIRPKPVENEITFLGEPCHIDGKDSVMAVVAISTDKISNMTQIVINTGMDEQIYQGKTSELIEATENFPKISKLEMDNGGFTRDRPHERMVSKALEELGITDESLEPALVNESGRIWLCPRDECNREFCKLHALKTHLLAHFGVRPFKCDYEGCTWAFHSEFKLKRHKETHLKRKNFACEVPGCNRRFTTIYNLWSHEKLHTRPNRIVCQVPNCHEKFQTKRALELHMKNHDQSHAPYMCNQEGCGKRYYTSNALTSHQRCHNYKEIDVKCSWPGCGKIFDKPCRLKAHVRSHTGSKPYTCTYQDCSWAFPSSSKLKRHQKKHTNERKFICNVEGCGKAFMRSEHLKEHLLTHAGGGYFQCYMCDAHFSAKSSLYVHIKKHQLKESVNTITDNVVEVPEQQIHGAEDTEENFITKIVSINDDVPGASIHEGGLENINTLQSQSIEISANTVKKEHEDFSYSCGMEGCGQSFKTLSSLASHMIATHESSIVEDYESPIGISTPSDASDLDYILYANPSVNSKNMSRAMLLDSCDAIIMNESPKNVACLPEPEPPPINTSSASPGPPSVAVSSVEGNLRLPESSYRISGDKQSLEHQQTRVRKNCQGSARTGLTREDVLKLKAKINGTETTNVGATDVVLGEANLNEGLLLTEELPSMFYQDDIVGTECQILLLDGGNSENPIDLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01299520;
- 90% Identity
- iTF_00262874;
- 80% Identity
- -