Basic Information

Insect: Campoletis sonorensis
Gene Symbol: -
Assembly: GCA_013761285.1
Location: JACEOJ010000140.1:575661-579715[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2 1.7e+02 3.2 4.2 2 23 226 248 225 248 0.96

2 16 0.017 1.4 9.7 1.3 1 23 321 343 321 343 0.98

3 16 0.012 0.97 10.2 0.8 1 23 392 414 392 414 0.97

4 16 0.00052 0.043 14.5 1.0 1 20 480 499 480 501 0.93

5 16 6.1e-07 5e-05 23.7 0.1 1 23 620 643 620 643 0.98

6 16 0.056 4.5 8.1 0.5 1 23 649 672 649 672 0.92

7 16 0.01 0.85 10.4 0.1 3 23 682 703 681 703 0.95

8 16 0.0014 0.12 13.1 1.1 3 23 713 733 711 733 0.95

9 16 0.13 11 6.9 0.1 2 20 805 823 804 823 0.95

10 16 0.059 4.8 8.0 0.0 2 23 843 864 842 864 0.96

11 16 7.6e-06 0.00062 20.3 1.4 2 23 884 905 884 905 0.98

12 16 0.0068 0.56 11.0 0.3 1 23 927 950 927 950 0.91

13 16 0.2 16 6.4 0.0 2 23 1001 1023 1000 1023 0.94

14 16 5.3e-05 0.0044 17.6 1.0 2 23 1044 1066 1043 1066 0.95

15 16 0.032 2.6 8.9 0.9 1 23 1077 1101 1077 1101 0.98

16 16 0.00045 0.037 14.7 0.1 2 23 1160 1182 1160 1182 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2	1.7e+02	3.2	4.2	2	23	226	248	225	248	0.96
2	16	0.017	1.4	9.7	1.3	1	23	321	343	321	343	0.98
3	16	0.012	0.97	10.2	0.8	1	23	392	414	392	414	0.97
4	16	0.00052	0.043	14.5	1.0	1	20	480	499	480	501	0.93
5	16	6.1e-07	5e-05	23.7	0.1	1	23	620	643	620	643	0.98
6	16	0.056	4.5	8.1	0.5	1	23	649	672	649	672	0.92
7	16	0.01	0.85	10.4	0.1	3	23	682	703	681	703	0.95
8	16	0.0014	0.12	13.1	1.1	3	23	713	733	711	733	0.95
9	16	0.13	11	6.9	0.1	2	20	805	823	804	823	0.95
10	16	0.059	4.8	8.0	0.0	2	23	843	864	842	864	0.96
11	16	7.6e-06	0.00062	20.3	1.4	2	23	884	905	884	905	0.98
12	16	0.0068	0.56	11.0	0.3	1	23	927	950	927	950	0.91
13	16	0.2	16	6.4	0.0	2	23	1001	1023	1000	1023	0.94
14	16	5.3e-05	0.0044	17.6	1.0	2	23	1044	1066	1043	1066	0.95
15	16	0.032	2.6	8.9	0.9	1	23	1077	1101	1077	1101	0.98
16	16	0.00045	0.037	14.7	0.1	2	23	1160	1182	1160	1182	0.96

Sequence Information

Coding Sequence: ATGAATGATATCGTCGATGTGCGGAATGTTGGAAACGTGTGCAGGTTGTGTCTCTCGTCGAAGGAGCCAAAATCATCTGTCTTTGCTGATCAGGCGGTCACGGCGGTTTCACTTGCGACCAAAATTCAAACTTGTCTTTCAATAGAGATCCAGACAAGCGACAAATTGTCAACGTCGATATGTTTCGACTGTTTGAGAAAAGTGAACAAATGGCATTCGTACAAGGAGTATTGTCTGCGGTCTCAGCAAAAATTGAAGCAATGTCTTGTCCAATTGTCGGAGGGTGCAGGAAATATCAAGGTGGAACCTCCGGATTACGAGGAAGTAATGGAGGTGGGAGGAACAGTGCCGGTGAGTTCGGATGAAGAAGCTGTTAATGTGCATGACGTTGCTGGTGCGCTCGAAAATGTCGAGTCAGTACGAGCAGCAACAACGATAAAGAGAGAGTTGATAGAGGGAGAGGAAAATCGAACAGCGTTTCCTGTAGAATCCGTTCGTAATACAGAATTGTTGTTGAATCCGATGGCAGTGGCAGGTCACAGGGAGGAGAGATTGATCGAGTTGAATTTGTCAGAAAAATCAATTCCATTAGCATTGACAGGGAAGAAGGGGGCTAAGAAAAAGAGTCGACGAGGCCCATTGACTCATTTTCGAGGCTTGCGTCGGTACAAGCAGAGATGCGCGTACTGTCAAATATATCTGCACTCGAAGCACAGTTACGCAAAGCACATGGAACGTTTTCATAGCGGAAAGGCGGTGATTCGAAAGGGTTCGCAAATGAAAAAATTGGTAGAAACAAAAGGAGAGAACAGTTGGGAGGGTGAGAATAATGTATCGATCGAGGAGGAAGGAGTCGAAACCGAAATGGAAGTAGAAGACGTGGAGGACGAGTTGATAAGCTTAGAAAAGGACGCACCACTGACACCGGTACAGCAAAACATAATAAGCCAACTGAAGACGTTTTCGTGTTACACTTGCGCTATTTCCTTTAGCGATCGCCGGAGTACGTTGAATCACATACGTCAGCATATGCCAGATTTAAGACCTTACACTTGCATAGCTTGTTTGACCGAATTCGCCGATCGTTCGGTTTACAAGCTCCACTGTGGAGCATCTTTCCAATGCGCGATGAAAATAGCACTAGTAATTCCCGAGTACGGTACTGAGAAGTATTTCACTTGTAACATGTGCCTCAGATCGTTGATCAATAGAAAAGAACTTTTGAGCCACTTGTCGCAACATTCGGATCGCCAATACGAACAAATGGTCGATGGATCTTTCCGTTCTCCGGAGCGACTTCAACCAGCGCCTAGTTTAAAAACCCTTAATTTTACTGCTATGCCTTCGAGTTCGAAAACACCAAAAAGAAAGCCTGCAGGATTAAAACGCGATGGTAGAATGCCCGCGCCTTACAACAACGGGGATCCCGCGTACAATCATCCGTGCAAACAATGCGGAATGATTTACAAACACAAGCAAAACCTTTCGCGTCACGTATTGTTGTGCAAAAAATTGCCTGCCGAGTGTCGAGTGTGTTATAGATGCATCAATTGCGGCCTGACTTTTCTCGCATTCAACAAGTTTTACAATCACGTATCACAAGTACATCATAAGAGAGATCACATTGTTTGTTATCGTTGCGACAGCAAAATAAAAACACGTGATTTTGTGTCACATTATCGAGAACATTATGGCGATGGGGATGATCAATGGACCGAAGTGTCACCGAGTCGTGTTCGAGACGGTAACGGAATCGTTTCATCGCCGGGATATAGCAACGTCAACACAGACGAGAAGGAGCAATCAAGGGGGAGGAAAGATCTTCGTTTGTCCATAAAATCGGATCCGGGCGGTAATTTCGAGTGCGACACATGTGGCAAGGGATTTGCGAGCGCTCCGAACTTGAAGCGTCACGTGCGAATGGTACACGAGGTGCGTAGTCGCTTCAACTGTTTCACATGCGCCAAAACTTTTGTTCACGAGGAAGAGTGGACGGAGCACGTGGAATTGGAGCACAAGAGAGCAGCCGAGAAGGTTGAAAATTGTCCGCAGTGTTCATCGGTGTTCGAGAGTCCACAAGAGCTAATGCTCCATCGTCGTGCGGTTCATGGTCTCGACGGTGAAGATCATCTCGCTTGTTACATATGCGGCAAACAATTCGGCAACGAAACGTCTTTGAAGATTCATCGGAGTCATCATTTCCGGGTTAATTCGAGATTGAACGTTGGAAACGAAGGAGCACAAGAGGCGGAGATATATCCGAGGGTCGAAGTGACAAAGACAATGATCGTCGGAAAAACTCCGAGTCCGGTTCGTAAGAGCGATCAGTCTCGAGGCCTTGGTTCGCCAAGAGCTAGAAAATCTTTTCCCAACGGAAGTCCCCTCGTTGGTAGATTGGAACGTGGAGCGTTGCAGTGTCAAGTATGTGACGATCGTTTCAACGACGTGACCGATCTCCGAAACCATCTGTGGGAAGTTCATTGCGCACGTAGCAAACCCGAGAAACCATTTATTTCGAATAAATTACAATGCGAGTTGTGTACGATAGTTTTGCCGGACGAGGAGAGTCTGGCGAGTCATTTGAAGTGGCACGAGAGTAATCCGATACTGAGCAACGGTACAACAACAAAACGCGAGCAGGCACTGGCCCAGTGCGATTTGTGCGGCAAGTTTTACAGCTCGGCCGCTAATCTTCGCAAGCATAAAAAGCGTCACAAGGCATTACCGAACATTGAGGGCGTTAGTCGTGGACGAAAACATTGGGCTTTGAATGAAGGTTTCGCTTGTGACGTGTGTCGCAAAATATTTGCTAGCAAAAGTATTTTGACGAAGCACAAATCAGCTGCACATCCAACGGCTAAGAAAAACGCGAATACGTCGAAAGCGTCAACGAGTAATCGTAAAGCACAGAGCACACCGAATAATTTCATAAAAACGACGGTTGGTTCGCCAGCAAAACGGAACGCCAATAGCTTCCCTGAGGACATTAAAAAATCAATCGTCTGCAATCTTTGTGGTAAAACGATGGCAGACATTAGAGTATTGGTGAAGCATCGTCAGGTGGTGCACAAAATAACGAACGACACGAATTTTGGTTTGGACGCTAATCATGCAAGTACTCCTCAAGTGCAGTGCACCGATTGTCCGAAATTCTTCACCAACGTATCGAACATGAGACAGCATTATACAAAAGTGCATGGGGCTAGCGCTGGCGATCGAGCCACGCGTTATCGTTGTTCTCTGGACGGTTGCAACTTCGCTTTCGAGACGCTCACGGCAAAACGAACTCACCAGAAAAGTCACGCAAACGTGGTGTACACCTGCGGCCTGTGTCCGCGTCAGTCTCTAAGTCCCTCGATAATGGCTTCGCATATGTTGACGGCTCATCGTACGAATCGCGTATCGGGCAATGACAAAATGACTCTTTGCAAAAAAATTCACATCGACAAATACGAGGTTCGTGGAGCGAACGGAAGAAAGTGTCCAATTTGCGATATTACTTATCCCAACTACAGAGCTCTTAAAATACACTATTTGAAGATACACGAGGACGGAATTTAG
Protein Sequence: MNDIVDVRNVGNVCRLCLSSKEPKSSVFADQAVTAVSLATKIQTCLSIEIQTSDKLSTSICFDCLRKVNKWHSYKEYCLRSQQKLKQCLVQLSEGAGNIKVEPPDYEEVMEVGGTVPVSSDEEAVNVHDVAGALENVESVRAATTIKRELIEGEENRTAFPVESVRNTELLLNPMAVAGHREERLIELNLSEKSIPLALTGKKGAKKKSRRGPLTHFRGLRRYKQRCAYCQIYLHSKHSYAKHMERFHSGKAVIRKGSQMKKLVETKGENSWEGENNVSIEEEGVETEMEVEDVEDELISLEKDAPLTPVQQNIISQLKTFSCYTCAISFSDRRSTLNHIRQHMPDLRPYTCIACLTEFADRSVYKLHCGASFQCAMKIALVIPEYGTEKYFTCNMCLRSLINRKELLSHLSQHSDRQYEQMVDGSFRSPERLQPAPSLKTLNFTAMPSSSKTPKRKPAGLKRDGRMPAPYNNGDPAYNHPCKQCGMIYKHKQNLSRHVLLCKKLPAECRVCYRCINCGLTFLAFNKFYNHVSQVHHKRDHIVCYRCDSKIKTRDFVSHYREHYGDGDDQWTEVSPSRVRDGNGIVSSPGYSNVNTDEKEQSRGRKDLRLSIKSDPGGNFECDTCGKGFASAPNLKRHVRMVHEVRSRFNCFTCAKTFVHEEEWTEHVELEHKRAAEKVENCPQCSSVFESPQELMLHRRAVHGLDGEDHLACYICGKQFGNETSLKIHRSHHFRVNSRLNVGNEGAQEAEIYPRVEVTKTMIVGKTPSPVRKSDQSRGLGSPRARKSFPNGSPLVGRLERGALQCQVCDDRFNDVTDLRNHLWEVHCARSKPEKPFISNKLQCELCTIVLPDEESLASHLKWHESNPILSNGTTTKREQALAQCDLCGKFYSSAANLRKHKKRHKALPNIEGVSRGRKHWALNEGFACDVCRKIFASKSILTKHKSAAHPTAKKNANTSKASTSNRKAQSTPNNFIKTTVGSPAKRNANSFPEDIKKSIVCNLCGKTMADIRVLVKHRQVVHKITNDTNFGLDANHASTPQVQCTDCPKFFTNVSNMRQHYTKVHGASAGDRATRYRCSLDGCNFAFETLTAKRTHQKSHANVVYTCGLCPRQSLSPSIMASHMLTAHRTNRVSGNDKMTLCKKIHIDKYEVRGANGRKCPICDITYPNYRALKIHYLKIHEDGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00265967;
90% Identity: iTF_00262865;
80% Identity: -