Basic Information

Insect: Campoletis sonorensis
Gene Symbol: ZIPIC
Assembly: GCA_013761285.1
Location: JACEOJ010000100.1:426773-429013[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 6.7 5.5e+02 1.6 0.1 1 19 228 246 228 246 0.83

2 10 0.012 1 10.2 0.5 1 23 341 363 341 363 0.91

3 10 0.00075 0.061 14.0 1.4 1 23 369 391 369 391 0.91

4 10 5.5e-06 0.00045 20.7 0.4 1 23 396 418 396 418 0.99

5 10 6.5e-05 0.0053 17.3 0.1 3 23 426 446 424 446 0.97

6 10 1.8e-06 0.00015 22.2 0.7 3 23 454 474 452 474 0.97

7 10 2.7e-05 0.0022 18.5 0.2 1 23 481 503 481 503 0.95

8 10 6.3e-05 0.0051 17.4 2.6 2 23 510 532 510 532 0.97

9 10 5.8e-05 0.0047 17.5 2.5 1 23 538 560 538 560 0.98

10 10 2.2e-05 0.0018 18.8 1.6 1 23 566 589 566 589 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	6.7	5.5e+02	1.6	0.1	1	19	228	246	228	246	0.83
2	10	0.012	1	10.2	0.5	1	23	341	363	341	363	0.91
3	10	0.00075	0.061	14.0	1.4	1	23	369	391	369	391	0.91
4	10	5.5e-06	0.00045	20.7	0.4	1	23	396	418	396	418	0.99
5	10	6.5e-05	0.0053	17.3	0.1	3	23	426	446	424	446	0.97
6	10	1.8e-06	0.00015	22.2	0.7	3	23	454	474	452	474	0.97
7	10	2.7e-05	0.0022	18.5	0.2	1	23	481	503	481	503	0.95
8	10	6.3e-05	0.0051	17.4	2.6	2	23	510	532	510	532	0.97
9	10	5.8e-05	0.0047	17.5	2.5	1	23	538	560	538	560	0.98
10	10	2.2e-05	0.0018	18.8	1.6	1	23	566	589	566	589	0.96

Sequence Information

Coding Sequence: ATGACCGAAAGTAATAAAAATAACACTGACAAGTGTCGGTTGTGTTTATGTGAATACGATAAACAGGATCTTACGTCAATTTTTACTGATGAAGCTACTCTCGGAGTGTCATTAGCCGTGAGAATAATGATTTGTCTTTCTCTTCCGGTCGAAGCAAAAGATTCGTTTCCCAACTGCGTGTGCAATAACTGTGAACAACGAGTGCTACAGTTTTATGCGTTTAGAGAAGATTGTTTAAACGCTTATTATTCGCTGCTCGAAAATCGTTCGTCAGCTTACAACAACGAGGATGAAAAATGCAGCGAAAGAGGGTCAATTTTTGAGGGTAGTGCAACGACGCGATACACGGACGTGGAAAAAGCAGAATCTTTGGATTGCGAGCAGCATTTGGAGGAGAATACGCCAGAAAATTATGTTGTTTGCATCGGCCGCTCGGCTGAGAATATAAATGACAAAACGCCGCTGAGAGAGACAAATTTGGACTCGAATTTCGAAGAGATTTCCTCTCAGAGTCGAATCAGCCACAAACTTGGAAACGAAACGGTGGTGGTAAATTATTCGGAGAGTGATTTTTCTTCGCATAAATATTCGCTGGATCCCAGTGACCGGGTGAACAAAGAATGCGGGAAAGAAGAGAAAGCGCGGGAGGGAGTTGTTGAGGAATCGAGTGAAATAGTAAAGTACAAATGTTTGCGTTGCAACAATTTGTTTTCCGATCTGGACGAAGCGTCGATCCACTGCTCGCAATGTGCGCAGGCTGACAACAATGATTTTCTGGAGACGGCAACGGAGACTGAGGAATATTTGGCAGAAGAATTGCAAGAAGAAAGTAAAAAGAGTGTGGAGGAAGTCGGAGAACCGCCTACCACTCAATTGACAACATGTTCTTGGGAGAAAAGCTCCCGTTTCAAAGGTCAAAGCAAAATGGAAACTACGACAGAGGAGAAAAGTTCAAAAACACTTTGTAACGAGTCGTCGCGGGTGGCTGCCAAGCGGAGAAAGAAAGAACCAAAATTAAGGCACTTTTGTCAAGCGTGCGACAGCGTTTTTACAAGCGCAGCTCTATTGCGACGCCACTCGGTGGTTCACACGGGCGAACGACCGTACGAGTGTCCAATATGTAAAAAGCGTTTTTCCCAAATCGGACAATTGAATTTTCACAAAAACTTCCACGACAATCCTCGCTATCGCTGCGAAATATGTAAAAAACCATTTTTGCGACCCAGCGATATTGCGAAACACATGAGAACTCACACCGGTGAGAAACCTTACGGTTGCAACGTTTGCTCCAAGTCTTTTGCTCAATTGGTCGCTCTGCAACAACACGAGAGAATACACACCGGCGACAAACCGTACGGTTGTGAAATTTGTGGCAAAAGGTTTTCCCAAAAAGCCAATAAAACGAAACACATCAAGATTCACAAAGAAGGAACCAAACCACACACTTGCCCTGTTTGCGGGAGAAGCTTCTCCGACCTGGAAGAAATGAATCTTCATCGAGCGGGCCACGGCGGTGGCAAACCCAGAAAATGCAGCTACTGCAACGAGAGTTTTAGAAAAATGTCAGAATTGTCTCAACACACGAGACGCTATCACACTTTTGAGAAACCTCACAAATGCGCTTTCTGCCAGAAAGCATTTTATTCTCTTTACAATCTTAAACAACACGTCATGGTTCACACCGGACAAAAACCCTACGCCTGCTCCAGCTGCGATCTCAGATTCACCCAAAAAGGCAATTTGACCAAACACTACGAGAGAAAACATTCCGATCGAACAAAAAAAGGCGCGGATGATTATTACGTCGTCAAAATCGAAGATCCGTACGAACAAGCCAAGGAACAAGAGATTTGGACGCTGGCCAATGATTTGTTGAAAAATTCAAACGATGAGTTGATCATTGAACGCGAAGAGACTGTGGAAATCGAAACATTGAAAAATGCCGAATCGTGA
Protein Sequence: MTESNKNNTDKCRLCLCEYDKQDLTSIFTDEATLGVSLAVRIMICLSLPVEAKDSFPNCVCNNCEQRVLQFYAFREDCLNAYYSLLENRSSAYNNEDEKCSERGSIFEGSATTRYTDVEKAESLDCEQHLEENTPENYVVCIGRSAENINDKTPLRETNLDSNFEEISSQSRISHKLGNETVVVNYSESDFSSHKYSLDPSDRVNKECGKEEKAREGVVEESSEIVKYKCLRCNNLFSDLDEASIHCSQCAQADNNDFLETATETEEYLAEELQEESKKSVEEVGEPPTTQLTTCSWEKSSRFKGQSKMETTTEEKSSKTLCNESSRVAAKRRKKEPKLRHFCQACDSVFTSAALLRRHSVVHTGERPYECPICKKRFSQIGQLNFHKNFHDNPRYRCEICKKPFLRPSDIAKHMRTHTGEKPYGCNVCSKSFAQLVALQQHERIHTGDKPYGCEICGKRFSQKANKTKHIKIHKEGTKPHTCPVCGRSFSDLEEMNLHRAGHGGGKPRKCSYCNESFRKMSELSQHTRRYHTFEKPHKCAFCQKAFYSLYNLKQHVMVHTGQKPYACSSCDLRFTQKGNLTKHYERKHSDRTKKGADDYYVVKIEDPYEQAKEQEIWTLANDLLKNSNDELIIEREETVEIETLKNAES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00262855;
90% Identity: -
80% Identity: -