Basic Information

Insect: Campoletis sonorensis
Gene Symbol: -
Assembly: GCA_013761285.1
Location: JACEOJ010010135.1:28194-31529[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00055 0.045 14.4 0.7 1 23 270 292 270 292 0.96

2 10 0.0002 0.016 15.8 0.2 1 23 300 323 300 323 0.90

3 10 5.6e-07 4.6e-05 23.8 1.5 2 23 366 387 365 387 0.97

4 10 0.0025 0.21 12.3 3.5 1 23 392 415 392 415 0.96

5 10 1.5e-06 0.00013 22.5 0.7 1 23 453 475 453 475 0.98

6 10 7.8e-07 6.4e-05 23.4 0.9 1 23 485 507 485 507 0.96

7 10 2.2e-06 0.00018 22.0 1.2 1 23 513 535 513 535 0.99

8 10 1.1e-05 0.00091 19.8 0.2 1 23 541 563 541 563 0.98

9 10 0.0019 0.16 12.7 4.2 1 23 569 591 569 591 0.98

10 10 0.00041 0.034 14.8 0.3 1 21 597 617 597 618 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00055	0.045	14.4	0.7	1	23	270	292	270	292	0.96
2	10	0.0002	0.016	15.8	0.2	1	23	300	323	300	323	0.90
3	10	5.6e-07	4.6e-05	23.8	1.5	2	23	366	387	365	387	0.97
4	10	0.0025	0.21	12.3	3.5	1	23	392	415	392	415	0.96
5	10	1.5e-06	0.00013	22.5	0.7	1	23	453	475	453	475	0.98
6	10	7.8e-07	6.4e-05	23.4	0.9	1	23	485	507	485	507	0.96
7	10	2.2e-06	0.00018	22.0	1.2	1	23	513	535	513	535	0.99
8	10	1.1e-05	0.00091	19.8	0.2	1	23	541	563	541	563	0.98
9	10	0.0019	0.16	12.7	4.2	1	23	569	591	569	591	0.98
10	10	0.00041	0.034	14.8	0.3	1	21	597	617	597	618	0.94

Sequence Information

Coding Sequence: ATGAATATTACAAATGACGATAAGACGGTAAGAAATTCCGTCGCTGATTTGCAAGTATCGAGCCACGATTGTCGCATTTGTTTCGAAAAATGCAATCAAGTTTGGCAAATATTTCATCCCACCAACGAGGAGATACCAAGGAAAATAATGGAATTCGCTGCTGTACAGGTGGAAGAGGGGGATGGTTTGCCGGGTACGATTTGCTACAATTGTCGTAGACTTTTGGACGTATCGTACAGTTTCAAGCAGCAGGTAGAGCAGTCGGATGCCAAATTTCGTAAGCTTTTGATTTTGAAAGAGACGAGCGACGAGGAGGACGAGAAAATACTATCGCTGTCGCATTCGGTGAATGTGGCGATAGCGGAAGCAATAGCGGATGAAATAGCTCAAGAGCAAGGGGCGGATAATGGGACGAGGTGTACGACGCTTGTAGGAGCGTTGGGAGAGCCTGGGAGATGTCACGGGATGGTGCACGAGTTGGAAGAACATCATTACGTGACGCACGACGAACCAATTATTTTTCGAATTGAGCCACCCCCCCGATCACGAATGCGTCCTGGCGGAATCGTTGACGGATATGCAGGCCGCGAAAAATACGACGAGTTGGTAGAATCGAGTTTAAACGGCGAGGTCTACAAAACGGAATCGATGCTGATGACCGAATCGTCGGAGGAGGACGAGTGCAATTTTCAAGAAACCGAATGCCTCGAAGAACCTGAGCAAAAAGATGAAAACTTGGATGACATTTGCAAGGAGCGATTTGAGAGCGACGACGAAGAAAAACCTTTGAGTTCGAGAACCCAAAGATTCAAATGTCCCAATTGTATCAAAACGTTTGCTACGAAAACTTCGCTCGATAGACACTCCGAAATACATAAAAAGCAAAACAGCCCCCGTTACGCGTGCACGATTTGCGACAAGCAATTCAGTAAAGTTGCCAAATTGAAGAACCACTTGGTAGCGGATCACGAAGATCCCGGTAGCGATGAAAAAATTCGTCAGTTAAACGAGGATCACGCTACAACGGATAAACAATCGGAATCGAACGAACGTGGACACGAATCGGAGGACGACGATCTACCTCTGGAGGGGTTGCAATGCACGCAGTGTGGAAAGTTATTCGCCACCAAAAGGAACCTCAAGAGACACATATCAACTCACAGCGGGTTAAAGTTTCATTGTTCAACTTGTAGCAAAGAATTCTCGAGAATCGACAAACTCAAAGAGCACGAACAATCGAAACACAAGGAAGAATTTTTCGCCTCTTCGGATTCTGATTCTGAGGACGATACCGATAACGAGAATAAACATGACGATGAGAATGGAAGTAAGAAAAAGGAAAAACACAACCGACCACACCGGTGTCCGATGTGTCCGAAAGCGTTTGCCCAAGAGCAATCGTTGACCAATCACATGGAGCGTCATAAGCGAGTGAAAGATACGCAAAAGCGTTTTTTGTGCGAGGTGTGCAGCAAATGTTTCGCGCAAAGTGGTTCATTGGTGGCTCACATGCGAACGCATACGGGGATCAAACCATACGTGTGCAACGTGTGTAGCAGAGCTTTCACCAAGAGCACCTATCTTCAGTTGCATTTGAGAACTCACAGCGGAGAAAAGCCTTATATATGTCAATACTGCAGTCGAGCATTCGCGCGAGCTAACACGTTAGCGAGACACATAACAATGCACACCGGAGAGGCAAAGTATCATTGTCAAATTTGTATGAAATCTTTTCGTCGCTTGACGTCCTTGAACGAACACACTTATACCCACACGGGTCAAAGACCTTACGCTTGTAAAATATGCACAAAAAGATACAACAACGCCGGTTCTCTTTATGCTCACACGAAAAAATGCAAAGCTCAACAATCCTCGGGAACAACGACCAACTACGTTCTTCCTGTTGACGAAGAAATTCATCAGAACGGTAGCCAACCCCAAATGATGATTTACACTCAGAGAAAATCGTCCGAACCTCCTCCCGTCGAACAAATCCAGCCCACCCAACAATTTATCATCTCAAACGTTCATAATCCTTCGCTCAAAACCCTTCCTAATAATATAATGCCTCAATTCACCGTCGAAGACCCCAATTTCTGTACCGTCAATTCTAAGTCTTTCAAAAGTCCCTACTACACTATTTATCCGAATATGTAA
Protein Sequence: MNITNDDKTVRNSVADLQVSSHDCRICFEKCNQVWQIFHPTNEEIPRKIMEFAAVQVEEGDGLPGTICYNCRRLLDVSYSFKQQVEQSDAKFRKLLILKETSDEEDEKILSLSHSVNVAIAEAIADEIAQEQGADNGTRCTTLVGALGEPGRCHGMVHELEEHHYVTHDEPIIFRIEPPPRSRMRPGGIVDGYAGREKYDELVESSLNGEVYKTESMLMTESSEEDECNFQETECLEEPEQKDENLDDICKERFESDDEEKPLSSRTQRFKCPNCIKTFATKTSLDRHSEIHKKQNSPRYACTICDKQFSKVAKLKNHLVADHEDPGSDEKIRQLNEDHATTDKQSESNERGHESEDDDLPLEGLQCTQCGKLFATKRNLKRHISTHSGLKFHCSTCSKEFSRIDKLKEHEQSKHKEEFFASSDSDSEDDTDNENKHDDENGSKKKEKHNRPHRCPMCPKAFAQEQSLTNHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGIKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQQSSGTTTNYVLPVDEEIHQNGSQPQMMIYTQRKSSEPPPVEQIQPTQQFIISNVHNPSLKTLPNNIMPQFTVEDPNFCTVNSKSFKSPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00263723;
90% Identity: iTF_00263723;
80% Identity: iTF_00263723;