Basic Information

Insect: Campoletis sonorensis
Gene Symbol: -
Assembly: GCA_013761285.1
Location: JACEOJ010000077.1:3880518-3882612[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.057 4.7 8.1 0.1 2 23 127 148 126 148 0.96

2 11 0.0051 0.41 11.4 3.1 2 20 213 231 212 232 0.94

3 11 0.00013 0.01 16.4 2.3 1 23 372 394 372 394 0.96

4 11 1.9e-05 0.0016 19.0 0.4 1 23 400 422 400 422 0.96

5 11 2.4e-06 0.00019 21.9 1.5 1 23 428 450 428 450 0.97

6 11 1.9e-05 0.0015 19.0 1.3 1 23 462 484 462 484 0.98

7 11 2.4e-07 1.9e-05 25.0 1.7 2 23 491 512 490 512 0.98

8 11 4.4e-06 0.00036 21.0 0.2 2 23 520 541 519 541 0.97

9 11 1.9e-06 0.00016 22.1 3.6 1 23 547 569 547 569 0.97

10 11 0.00017 0.014 16.0 3.8 1 23 575 597 575 597 0.98

11 11 0.0001 0.0085 16.7 4.4 1 23 603 625 603 625 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.057	4.7	8.1	0.1	2	23	127	148	126	148	0.96
2	11	0.0051	0.41	11.4	3.1	2	20	213	231	212	232	0.94
3	11	0.00013	0.01	16.4	2.3	1	23	372	394	372	394	0.96
4	11	1.9e-05	0.0016	19.0	0.4	1	23	400	422	400	422	0.96
5	11	2.4e-06	0.00019	21.9	1.5	1	23	428	450	428	450	0.97
6	11	1.9e-05	0.0015	19.0	1.3	1	23	462	484	462	484	0.98
7	11	2.4e-07	1.9e-05	25.0	1.7	2	23	491	512	490	512	0.98
8	11	4.4e-06	0.00036	21.0	0.2	2	23	520	541	519	541	0.97
9	11	1.9e-06	0.00016	22.1	3.6	1	23	547	569	547	569	0.97
10	11	0.00017	0.014	16.0	3.8	1	23	575	597	575	597	0.98
11	11	0.0001	0.0085	16.7	4.4	1	23	603	625	603	625	0.98

Sequence Information

Coding Sequence: ATGTTTATTGTTACCAAAGAAATTGACAGCGAGAATATAACAAAACTGTGTCGTACCTGCTTGCGGGAAGACGGTGAAAAAATGGTTTGTCTTTTTTCGGGCCCCGCAGGTTCGTCTCTCGCTGCAAAACTGCGAACTCTTTCATGTCTCGAGGTGTGGCAAGGTGATGGTTTACCAGAAAAATTATGTGATCGATGTGTCACAAGAGCCGAGTCTGCTTTATTATACAGAGAACAATGTCGAGCTGCAGATTTAGCACTAAGACAAGCTGCCTCCAAGGTCTCTAGAGCTGCCGCAGATGCAACAATATCAATCTCAAAGCTCTATTCCCACAACAAACAGGATTTTGCGATCACTGAAAACTCCACCAAGTCCTTGAAATGTGCAGAATGCGAAGCACTGTTTTCAAACTACCACGAACTTGGCGTTCACGCGAGAGGACATTTACCGTTTGTTCAGGAAACAAGACCGGTGCAACATATGAATATAGTGGAGTCTCAGAACCCTTTGAGTTACATGACAACCGCCGAAAGTGAAATGGGCAAAGCGTCAAGAGTATTGTCTAATTCTTTTGTGGATACAAATATCTCGGAGACAGTTGCAACGGCAAAAAACGATCGTGCTTCTTGCGCTCTTCACTGTTCCCTCTGCAACCACACGTTTACGAATAGAACGCAATTGATAAATCATCACGTGCCAACGCACTGTAACGACAATGCTGAGAATTCTTGCGACGAGGAAAATTTAGCAGTAGGTGAAAGTTCGAAGATCCACAATCTCGAAAATCGTGATTTTTCACGTTCGATTGATCATCACAATTCGGTGCACAACGTAATAAAAAATTTGTCATATCCACGTGAAGACGAGACAAGAATGGAGGCGATTAATTATTCGTCGCACTTGGTACTCGAGCCCAGAAATATTGTAAGCAACAAGGAAACGAGAAATGACGGAAATTCGCAGGATCAAATATCCAGCGATTTGTCAAGCGAATCTTGCAACGATCACATACCAAGATATCCAAATTTCGAAGACGTCGAGATTCATGAGAGTGTAAACGAAATTTTTAAGAATCCTCTGATCACTGATATTCCGATAACTTCTAGGAAGACACACAGGTGCCAAGTTTGCGAGAAAACATTTGCACAGAGATCAAAACTCGTATCCCACTCGCTCAGCCACACTGGTGAAAAACCATTTGCCTGCCTCATCTGCGACAAAGCTTACACATCGAGAAGCAAATTGAACGCTCATAATCGTTTGCACACCCAAACGAATGTACATCGATGCAACATATGCGACAAATCGTTTCCCTATCCATCCTATTTAACGGAACACTCGAAAATTCATGAAAAAACGAAAAATTGTAATGGCACTAAAGAGTACGAATGCACGGTGTGCAGCAAACAATTTAGGTTGCTAAAGAATTTGAAAATTCATCTAAGACTGCACACGGGCAAAGGCCTTGTTCGTTGTGAAATTTGTCACAAGGCATTCGGACAAAAGTATAATTTAAAAGTCCATCTCAGGACTCACGGGGTTATCGGTAAATTCTTGAAGTGCAATTATTGTGGCAAAAGTTTTGCAGCCAGAGGCAATTACGTCGAACATCTGAGAATCCACACGAGAGTCAAACCCTTCAAATGTCGAATATGTAATAAATCTTTTTCTCAATCAGGCCACCTCAAGACTCACGAATTATCGCACAATTCATCGCGACCACATCAGTGTCGTTTATGTGGAAAACGGTACAAACTTGCTGCTCATCTCAGAAGACACGCGAGTACACACACAAGCATCAAGTCGCACAAATGCGAACAGTGCAATCAATTATTCTCGCAGGCTTTTAGCCTCAAAAGACACTTAAAAAGACACAGCGAGGCCCAAATCTAA
Protein Sequence: MFIVTKEIDSENITKLCRTCLREDGEKMVCLFSGPAGSSLAAKLRTLSCLEVWQGDGLPEKLCDRCVTRAESALLYREQCRAADLALRQAASKVSRAAADATISISKLYSHNKQDFAITENSTKSLKCAECEALFSNYHELGVHARGHLPFVQETRPVQHMNIVESQNPLSYMTTAESEMGKASRVLSNSFVDTNISETVATAKNDRASCALHCSLCNHTFTNRTQLINHHVPTHCNDNAENSCDEENLAVGESSKIHNLENRDFSRSIDHHNSVHNVIKNLSYPREDETRMEAINYSSHLVLEPRNIVSNKETRNDGNSQDQISSDLSSESCNDHIPRYPNFEDVEIHESVNEIFKNPLITDIPITSRKTHRCQVCEKTFAQRSKLVSHSLSHTGEKPFACLICDKAYTSRSKLNAHNRLHTQTNVHRCNICDKSFPYPSYLTEHSKIHEKTKNCNGTKEYECTVCSKQFRLLKNLKIHLRLHTGKGLVRCEICHKAFGQKYNLKVHLRTHGVIGKFLKCNYCGKSFAARGNYVEHLRIHTRVKPFKCRICNKSFSQSGHLKTHELSHNSSRPHQCRLCGKRYKLAAHLRRHASTHTSIKSHKCEQCNQLFSQAFSLKRHLKRHSEAQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01509054;
90% Identity: iTF_01299476;
80% Identity: -