Cson007331.1
Basic Information
- Insect
- Campoletis sonorensis
- Gene Symbol
- -
- Assembly
- GCA_013761285.1
- Location
- JACEOJ010010138.1:31341-34673[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00061 0.05 14.3 0.7 1 23 296 318 296 318 0.96 2 11 0.00022 0.018 15.6 0.2 1 23 326 349 326 349 0.90 3 11 2.8e-05 0.0023 18.5 1.4 3 23 385 405 383 405 0.98 4 11 6.3e-07 5.2e-05 23.7 1.5 2 23 443 464 442 464 0.97 5 11 0.0029 0.23 12.2 3.5 1 23 469 492 469 492 0.96 6 11 1.7e-06 0.00014 22.3 0.7 1 23 530 552 530 552 0.98 7 11 8.8e-07 7.1e-05 23.2 0.9 1 23 562 584 562 584 0.96 8 11 2.5e-06 0.0002 21.8 1.2 1 23 590 612 590 612 0.99 9 11 1.2e-05 0.001 19.6 0.2 1 23 618 640 618 640 0.98 10 11 0.0022 0.18 12.5 4.2 1 23 646 668 646 668 0.98 11 11 0.00046 0.038 14.7 0.3 1 21 674 694 674 695 0.94
Sequence Information
- Coding Sequence
- ATGAATATTACAAATGACGATAAGACGGTAAGAAATTCCGTCGCTGATTTGCAAGTATCGAGCCACGATTGTCGCATTTGTTTCGAAAAATGCAATCAAGTTTGGCAAATATTTCATCCCACCAACGAGGAGATACCAAGGAAAATAATGGAATTCGCTGCTGTACAGGTGGAAGAGGGGGATGGTTTGCCGGGTACGATTTGCTACAATTGTCGTAGACTTTTGGACGTATCGTACAGTTTCAAGCAGCAGGTAGAGCAGTCGGATGCCAAATTTCGTAAGCTTTTGATTTTGAAAGAGACGAGCGACGAGGAGGACGAGAAAATACTATCGCTGTCGCATTCGGTGAATGTGGCGATAGCGGAAGCAATAGCGGATGAAATAGCTCAAGAGCAAGGGGCGGATAATGGGACGAGGTGTACGACGCTTGTAGGAGCGTTGGGAGAGCCTGGGAGATGTCACGGGATGGTGCACGAGTTGGAAGAACATCATTACGTGACGCACGACGAACCAATTATTTTTCGAATTGAGCCACCCCCCGATCACGAATGCGTCCTGGCGGAATCGTTGACGGATATGCAGGCCGCGGTTTGCGAGGGAATCGTTGAGAAGAACATGGAATTGAACGATTGCGGCAGAGAGAACGGAACGGTGAATGTTTTGATAGAAAAATACGACGAGTTGGTAGAATCGAGTTTAAACGGCGAGGTCTACAAAACGGAATCGATGCTGATGACCGAATCGTCGGAGGAGGACGAGTGCAATTTTCAAGAAACCGAATGCCTCGAAGAACCTGAGCAAAAAGATGAAAACTTGGATGACATTTGCAAGGAGCGATTTGAGAGCGACGACGAAGAAAAACCTTTGAGTTCGAGAACCCAAAGATTCAAATGTCCCAATTGTATCAAAACGTTTGCTACGAAAACTTCGCTCGATAGACACTCCGAAATACATAAAAAGCAAAACAGCCCCCGTTACGCGTGCACGATTTGCGACAAGCAATTCAGTAAAGTTGCCAAATTGAAGAACCACTTGGTAGCGGATCACGAAGATCCCGGTAGCGATGAAAAAATTCGTCAGTTAAACGAGGATCACGCTACAACGGATAAACAATCGGGTAGATCGGAGAGCAAAAAAAACGTAAAATTTGGCTGCAATATTTGCGGAAAACAATTTACTTATCAAAAATCGTTTATGACTCATGCGAAAACTCATCCGGGCTACGAACCTGAAACCATTTATGAGAATAACGAAAATAATATTTCGGAAGAATCGAACGAACGTGGACACGAATCGGAGGACGACGATCTACCTCTGGAGGGGTTGCAATGCACGCAGTGTGGAAAGTTATTCGCCACCAAAAGGAACCTCAAGAGACACATATCAACTCACAGCGGGTTAAAGTTTCATTGTTCAACTTGTAGCAAAGAATTCTCGAGAATCGACAAACTCAAAGAGCACGAACAATCGAAACACAAGGAAGAATTTTTCGCCTCTTCGGATTCTGATTCTGAGGACGATACCGATAACGAGAATAAACATGACGATGAGAATGGAAGTAAGAAAAAGGAAAAACACAACCGACCACACCGGTGTCCGATGTGTCCGAAAGCGTTTGCCCAAGAGCAATCGTTGACCAATCACATGGAGCGTCATAAGCGAGTGAAAGATACGCAAAAGCGTTTTTTGTGCGAGGTGTGCAGCAAATGTTTCGCGCAAAGTGGTTCATTGGTGGCTCACATGCGAACGCATACGGGGATCAAACCATACGTGTGCAACGTGTGTAGCAGAGCTTTCACCAAGAGCACCTATCTTCAGTTGCATTTGAGAACTCACAGCGGAGAAAAGCCTTATATATGTCAATACTGCAGTCGAGCATTCGCGCGAGCTAACACGTTAGCGAGACACATAACAATGCACACCGGAGAGGCAAAGTATCATTGTCAAATTTGTATGAAATCTTTTCGTCGCTTGACGTCCTTGAACGAACACACTTATACCCACACGGGTCAAAGACCTTACGCTTGTAAAATATGCACAAAAAGATACAACAACGCCGGTTCTCTTTATGCTCACACGAAAAAATGCAAAGCTCAACAATCCTCGGGAACAACGACCAACTACGTTCTTCCTGTTGACGAAGAAATTCATCAGAACGGTAGCCAACCCCAAATGATGATTTACACTCAGAGAAAATCGTCCGAACCTCCTCCCGTCGAACAAATCCAGCCCACCCAACAATTTATCATCTCAAACGTTCATAATCCTTCGCTCAAAACCCTTCCTAATAATATAATGCCTCAATTCACCGTCGAAGACCCCAATTTCTGTACCGTCAATTCTAAGTCTTTCAAAAGTCCCTACTACACTATTTATCCGAATATGTAA
- Protein Sequence
- MNITNDDKTVRNSVADLQVSSHDCRICFEKCNQVWQIFHPTNEEIPRKIMEFAAVQVEEGDGLPGTICYNCRRLLDVSYSFKQQVEQSDAKFRKLLILKETSDEEDEKILSLSHSVNVAIAEAIADEIAQEQGADNGTRCTTLVGALGEPGRCHGMVHELEEHHYVTHDEPIIFRIEPPPDHECVLAESLTDMQAAVCEGIVEKNMELNDCGRENGTVNVLIEKYDELVESSLNGEVYKTESMLMTESSEEDECNFQETECLEEPEQKDENLDDICKERFESDDEEKPLSSRTQRFKCPNCIKTFATKTSLDRHSEIHKKQNSPRYACTICDKQFSKVAKLKNHLVADHEDPGSDEKIRQLNEDHATTDKQSGRSESKKNVKFGCNICGKQFTYQKSFMTHAKTHPGYEPETIYENNENNISEESNERGHESEDDDLPLEGLQCTQCGKLFATKRNLKRHISTHSGLKFHCSTCSKEFSRIDKLKEHEQSKHKEEFFASSDSDSEDDTDNENKHDDENGSKKKEKHNRPHRCPMCPKAFAQEQSLTNHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGIKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQQSSGTTTNYVLPVDEEIHQNGSQPQMMIYTQRKSSEPPPVEQIQPTQQFIISNVHNPSLKTLPNNIMPQFTVEDPNFCTVNSKSFKSPYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00828966;
- 90% Identity
- iTF_00262836;
- 80% Identity
- iTF_00263710;