Cson011611.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Campoletis sonorensis
Gene Symbol
-
Assembly
GCA_013761285.1
Location
JACEOJ010005639.1:33107-35632[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 9.4e-06 0.00077 20.0 0.5 1 23 353 376 353 376 0.97
2 14 0.0023 0.19 12.5 3.5 2 21 468 487 467 489 0.94
3 14 1.4e-06 0.00012 22.6 1.2 1 23 495 517 495 517 0.98
4 14 0.00034 0.028 15.1 1.0 1 23 523 545 523 545 0.98
5 14 3.7e-07 3e-05 24.4 0.9 1 23 560 582 560 582 0.98
6 14 3.8e-06 0.00031 21.2 1.8 3 23 590 610 588 610 0.98
7 14 6.1e-06 0.0005 20.6 1.5 1 23 616 638 616 638 0.98
8 14 0.0014 0.11 13.1 0.4 1 23 644 666 644 666 0.99
9 14 2e-05 0.0016 19.0 0.3 1 23 672 695 672 695 0.92
10 14 2e-05 0.0016 19.0 1.3 1 23 701 723 701 723 0.98
11 14 0.00043 0.035 14.7 4.7 1 23 729 751 729 751 0.98
12 14 7.6e-05 0.0062 17.1 0.2 1 23 757 780 757 780 0.96
13 14 1.1e-05 0.00093 19.7 0.8 1 23 786 808 786 808 0.96
14 14 3.8e-06 0.00031 21.2 4.5 1 23 814 836 814 836 0.99

Sequence Information

Coding Sequence
ATGAATGCAGCGGCAGCAGTGACTAATCAATGGATTTGTTCAAAGGTTTGTCGAGACCAGGACTTGCCTTTGATGCTCGACGTTCCATTTGCTTCTTTAAAGCAGAAAAATTATGACGCAAAGTCTTTAATACACGAGCGTTCCAAAATGGAAGAAGAGAACGGCGAGTCGGAGAATTTTGTGGCTATAAATCCGTGTGATAAAAAAACTGAGACAGTGATAAACGAAGCGTCTTTGCTGCAGCCGCCGGTGAGAGTAAATCACAGGGCGCAGATTGACGTTATAGAAATTGAGGAGGGAGAAAATAACGAGAATCGGAAGCACGTATTGATTTACGAAGAGCAACAGACAAAATTGGTCGTTCTGAAAGTTCTGAAGAGCGGCGAAGTGAGCGAAGTGGCGAATGAGTTGGTAGAAATCGTGACGATGATTGGAGCCCCGCGAATAATTCAGAGCGGTCACGGTCGTGATCACGCGGAGCAAGTAGTCCGGGAAATTCGTTTGTTGCTTCGAGACTTTTGCGTCGTCCACGGAGATGCTTCGAAGAACAGTGAAGATCGTCGAGACTTTGGGATTATCCTGAGATCCTGGATGAAAAATCATCCGGGCAGGAGTTTGAACGAAGCTCTTAAGATCGTTCAAGTTATCGAGAATACAACGAAACATTCACGTCAGGGCGCTATTCCCAGCCAACTTTTCTTCGGGCGAAATATAAGCGAGGATCTTCGAAGGACGATTGGGACAAAAGGATCACATGGAAATTCTTTAAAAGCGAATCCCGAGGTTGAGAAAAAAAGGGGATTTTTGGCTGACAGTGGAAAATTAGCAGCAGAAATAAAGAACGAGTCCTCGGAATCGAATTTTGATAATTGCAGGTTCGTCGGTAGTGAAAAAGTCTCTTTAAATGTTGAAGAATGTAAAAAAAATGACGTTTCTCCAGAAAATACGGATGTTGGGGAAGTAGAAAAATATTTATCGTGTGAAATGGGGGCAAAAAATATCACGAAATTAGGACATTTGAGGAACCACGTGAAAGGGCAGACTGGAAACAACAATTTTGAGTGTTCGATTTGCGATCAGTCGTTCCGATCGTCGAGTGTTTACGAAATGCACATGAAAGTATCTCACGAGCACGAGGAGCCGAGTAAAAATGACGACGCGAAGGAGGACGAAGGTGAGAATCGTTTGGAGCCAAAGGCAGAAGAGGAAAATGCATTAATCCGGGAACAAAAAGCTCGTTCGAGCGAAGAAGAAACATCGGAAGAGCAACCGGCGAGCAGAGTGACTCGAAAGACAAAAGTTTTAGGAACGTCGGTAAGAAAGCCGCTGAAAAAAAGAAAAATTGGAAAAAAGCGATTAAATAGCGTAGCAACAAACAAATCGAGCGAAAGTTCTCTCCTGGAATGTACATTCTGCCAGCAAACTTTCAACTTTCCGAGCGTGCTGAAAAGACACATGAGATGTCACACGAACGAGAGACCCTACGTTTGCGAAATATGCAACAAAAGTTTCAAACAATTGGGGCACTTGAGTCAACACGCGTTGACTCACACGGACTATCGATCATTTCGTTGCACAATATGTTCCATCAAATTCGATTCCCTAGAAAGCCTCAAGCTTCATTCAAACACTCACAAAGAAGAGACGATTTGTCCCTCGAAAAAATCCTATCGTTTGTTCGAGTGCGATATTTGCAAAAAAGTATTTACGACCAAGAGCGTATTGGAGCGTCACATATTCACGCACACGCACGAGCGGAAGTTCGGGTGTAAAATATGTGGAAAAAGATTCAAGCAATCTGGTCACGTGAAATCTCATATGCTCGTGCACACGGGAGAACGAAAATTCGAATGTGACATTTGTACGAAACGTTTTAGTCTCTCGAACTCTTTGAAAAAGCACATGTACGTGCACAACGGTGACAAGCCTTATCAGTGCGATATTTGTGGTTCGAGATTTCTCGAAAAACGAAATCTCAACGGGCACCTCATGACGCACACCAACGAAAAACCATTTTCTTGCAAAATATGTGGCAAACGTTACACATTGGCTGACACTCTTAGACGTCACGTGAGCGCGGCTCACGAAGACGGTCGAACTTATCAGTGTGAAATTTGCGCCAAAATGTTCAAGCAACTCGCACACTTGTCCGTACACAAAAAGGTTCACAACGATGAACGACCTTTTCAATGTCATTTGTGCGAGAAAAATTTCAAACATAAAAATGTTCTCAAATCTCATCTCGCGATACACGCCAATGTCAGACCCTTCGAATGCGACGCTTGCAAAGCAACTTTTGTCAGAAAAACTAACCTCCAAACTCACATCGCTTCGGCACACATGAACGAACGCCCATACGCTTGTACCATTTGCAACAAACGTTTCAAACAAATAAGTCACTTGAACGGCCATATTGTTGTCCATAGCAACTCAATGCCCTATCAATGCGATTTTTGTGATCGTCGCTGCAATAGACTCGATAATCTTAAAAAACATATGAGACTGCATACGAAAAACGTGACGTAA
Protein Sequence
MNAAAAVTNQWICSKVCRDQDLPLMLDVPFASLKQKNYDAKSLIHERSKMEEENGESENFVAINPCDKKTETVINEASLLQPPVRVNHRAQIDVIEIEEGENNENRKHVLIYEEQQTKLVVLKVLKSGEVSEVANELVEIVTMIGAPRIIQSGHGRDHAEQVVREIRLLLRDFCVVHGDASKNSEDRRDFGIILRSWMKNHPGRSLNEALKIVQVIENTTKHSRQGAIPSQLFFGRNISEDLRRTIGTKGSHGNSLKANPEVEKKRGFLADSGKLAAEIKNESSESNFDNCRFVGSEKVSLNVEECKKNDVSPENTDVGEVEKYLSCEMGAKNITKLGHLRNHVKGQTGNNNFECSICDQSFRSSSVYEMHMKVSHEHEEPSKNDDAKEDEGENRLEPKAEEENALIREQKARSSEEETSEEQPASRVTRKTKVLGTSVRKPLKKRKIGKKRLNSVATNKSSESSLLECTFCQQTFNFPSVLKRHMRCHTNERPYVCEICNKSFKQLGHLSQHALTHTDYRSFRCTICSIKFDSLESLKLHSNTHKEETICPSKKSYRLFECDICKKVFTTKSVLERHIFTHTHERKFGCKICGKRFKQSGHVKSHMLVHTGERKFECDICTKRFSLSNSLKKHMYVHNGDKPYQCDICGSRFLEKRNLNGHLMTHTNEKPFSCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDACKATFVRKTNLQTHIASAHMNERPYACTICNKRFKQISHLNGHIVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00262825;
90% Identity
-
80% Identity
-