Basic Information

Insect: Campoletis sonorensis
Gene Symbol: -
Assembly: GCA_013761285.1
Location: JACEOJ010000210.1:250331-252865[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.027 2.2 9.1 0.6 2 23 155 176 154 176 0.97

2 14 5.7e-06 0.00046 20.7 1.5 2 23 188 209 188 209 0.98

3 14 3.6e-05 0.0029 18.2 2.0 2 23 216 237 215 237 0.97

4 14 3.5e-05 0.0029 18.2 1.3 2 23 310 331 309 331 0.96

5 14 3.2e-06 0.00026 21.4 0.6 1 23 370 392 370 392 0.97

6 14 1e-06 8.6e-05 23.0 1.8 1 23 398 420 398 420 0.96

7 14 4e-05 0.0033 18.0 0.6 1 23 426 448 426 448 0.98

8 14 4e-05 0.0033 18.0 5.3 1 23 454 476 454 476 0.97

9 14 1e-07 8.4e-06 26.1 1.0 1 23 481 503 481 503 0.97

10 14 0.00018 0.014 16.0 1.4 1 23 509 531 509 531 0.97

11 14 1.3e-05 0.0011 19.5 3.7 1 23 537 559 537 559 0.96

12 14 1.8e-05 0.0015 19.1 1.6 1 23 565 587 565 587 0.98

13 14 8.1e-06 0.00066 20.2 1.5 1 23 593 615 593 615 0.92

14 14 0.00045 0.037 14.7 1.8 1 23 621 644 621 644 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.027	2.2	9.1	0.6	2	23	155	176	154	176	0.97
2	14	5.7e-06	0.00046	20.7	1.5	2	23	188	209	188	209	0.98
3	14	3.6e-05	0.0029	18.2	2.0	2	23	216	237	215	237	0.97
4	14	3.5e-05	0.0029	18.2	1.3	2	23	310	331	309	331	0.96
5	14	3.2e-06	0.00026	21.4	0.6	1	23	370	392	370	392	0.97
6	14	1e-06	8.6e-05	23.0	1.8	1	23	398	420	398	420	0.96
7	14	4e-05	0.0033	18.0	0.6	1	23	426	448	426	448	0.98
8	14	4e-05	0.0033	18.0	5.3	1	23	454	476	454	476	0.97
9	14	1e-07	8.4e-06	26.1	1.0	1	23	481	503	481	503	0.97
10	14	0.00018	0.014	16.0	1.4	1	23	509	531	509	531	0.97
11	14	1.3e-05	0.0011	19.5	3.7	1	23	537	559	537	559	0.96
12	14	1.8e-05	0.0015	19.1	1.6	1	23	565	587	565	587	0.98
13	14	8.1e-06	0.00066	20.2	1.5	1	23	593	615	593	615	0.92
14	14	0.00045	0.037	14.7	1.8	1	23	621	644	621	644	0.92

Sequence Information

Coding Sequence: ATGGATGCCCTATCGACGAGCAGTCAGGTTATGGATGAAAACATTGTCGGGGTGGAGCTTAAGGAAGAAACGGACGGAAGATTTAGCCAGACTTACATCGAAGATATCTGTCCAGGAACTTTTGGAAAAGTTTTCTTACCGATCGACAGCCATGAAGTGGATTTCACGGATGAAATGGTCAAACTGGAGCTAGAGAGTCAATCGGGAGATCATCACATTTGGGCAGCGCAATTGGCAACGACGACACTGTGCGAGCAGGACGACTGTGGAATCCACAGGAATCCAGAGGAGACGGTTGACGAGTCGGAAGGAACATCCGCGGAGGCTGAGAAGAAGGAGGAGTCGGATCAGAACACGGGGGAGGAGGAGGAGGAGGTGGAGGAGGCGAATAATCATGAGAACGAGCAGGAGATCGAGAAGCCGGACGAAGAGTCTTGCGGGAACTCAAAATTCTACAAGATTCAATGCACCATTTGTAAAAAGTGGTTTTTGAACAACGACTCGATGATAACTCATTTGAGGAGCCACTGCGGTGGCGGAAATCTTCAAAACGGTGTGGAACAATGTCAAGTTTGCGATCAAAGCTTCAACGACAACACGAGTCTTCACGCTCACATGTTAACCCACGTGGGGATGAATCCTGTGGAGTGCAACATTTGCCAAAAGAGATTTGCGTACAAATGGTGCCTGAGAAATCACGTGCAGACGCACGCCGGAACGAAGCCTTTCGAGAGCTTTTCTCCGACGGCGAGTAACATTGTGCTCGTCAACAACGAGCCGACGAATCTTGGTTTACCAATTCCAGGGGCTGGTTATGCCTTCGAGAGCGTCAGCGATCAAAGAAAACTGTTCGAGGAGCGCACGAGCTCCGAGGAGGAGAGGAGCAAGGAGAGTAAATCTGAAAACGAAGTCTCGAGGAACGGGCTTCGCTGCGAAGTCTGTAAACTGCGTTTCAAAGACAGAGAAAGTCTGAACCGACACACTCTGTCGCACATGAACGAAGGGGCTGCTTACAAATACGATATTTTCAGCGGAACCCTTCGCGAGACAGTCAAACCCGAAATGCCAGATCCACGAGCGGCTCAAACGAGCTCCGTCACCAAACAATTCAAATGCACCCTCTGTGACAGGTCCTTCGGCCAACGCACCGCTCTCAACAATCACATGCTCGCTCACAGCGGCGAGAAACCACACGCTTGCAATATCTGCGAAAAAACTTACAAACGAAAGTCCGAATTGATAAGACACACGATGGTTCACACCGGGGAAAGACCCTACGAGTGCAAAGAATGCTTAATGACCTTCAGGGAAAAAGCTAAACTCAATTCTCACATGCTCGTCCACACCGGCGAAAAACCCCACGAGTGTTACATTTGCCACAAAGCCTGCGCTCGAAAATCCGACCTCAACAGCCACATGCTTTCTCACACCGGCGGACAGTACGACTGCAAAGTCTGCGACAAAATTTTCACTCGCAAATCTGATCTCAACAGACACACTCTCATTCACACCGGCGAAAAACCCTTCGCTTGCCAACACTGCGACATGGCTTTTCGAGAAAGAACTCGATTAAACTCTCACATGCTCGTCCACACCGGCGACAAAAGACACGCTTGTCACATCTGCGCCAAAAACTTCAGGGAAAAATCTTCCCTCAAAAAACACATGCTCGTTCACACCGGTGACCGACCCTACGAATGCTTCATCTGTAAAAAAACATTCACCCTCAAAACCACACTCAACAGCCACCTCCTCGTACACTCCGGCGAAAGACCCTACGAATGCGACAACTGCCCTAAATCTTTTAGAGAAAAATCATCACTCCGTAAACACTCCGCTTTTCACAACAACGATCGCAGCCACGAGTGCAATGTTTGCTTCAAAAAATTCACTCACAAATCTGCTCTTGGATCACACGCCGCCATTGATCATCCTTCTTAA
Protein Sequence: MDALSTSSQVMDENIVGVELKEETDGRFSQTYIEDICPGTFGKVFLPIDSHEVDFTDEMVKLELESQSGDHHIWAAQLATTTLCEQDDCGIHRNPEETVDESEGTSAEAEKKEESDQNTGEEEEEVEEANNHENEQEIEKPDEESCGNSKFYKIQCTICKKWFLNNDSMITHLRSHCGGGNLQNGVEQCQVCDQSFNDNTSLHAHMLTHVGMNPVECNICQKRFAYKWCLRNHVQTHAGTKPFESFSPTASNIVLVNNEPTNLGLPIPGAGYAFESVSDQRKLFEERTSSEEERSKESKSENEVSRNGLRCEVCKLRFKDRESLNRHTLSHMNEGAAYKYDIFSGTLRETVKPEMPDPRAAQTSSVTKQFKCTLCDRSFGQRTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECYICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACQHCDMAFRERTRLNSHMLVHTGDKRHACHICAKNFREKSSLKKHMLVHTGDRPYECFICKKTFTLKTTLNSHLLVHSGERPYECDNCPKSFREKSSLRKHSAFHNNDRSHECNVCFKKFTHKSALGSHAAIDHPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00265916;
90% Identity: iTF_00439665;
80% Identity: -