Basic Information

Insect: Campoletis sonorensis
Gene Symbol: -
Assembly: GCA_013761285.1
Location: JACEOJ010010463.1:4797-7354[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.001 0.085 13.5 0.3 1 21 31 51 31 52 0.94

2 18 1.6e-05 0.0013 19.2 2.8 1 23 88 110 88 110 0.98

3 18 0.00034 0.028 15.1 0.0 2 23 115 136 115 136 0.97

4 18 4.4e-05 0.0036 17.9 0.6 3 23 144 164 142 164 0.96

5 18 4.6e-06 0.00038 21.0 0.1 3 23 172 192 170 192 0.97

6 18 1.9 1.6e+02 3.3 6.1 1 23 201 223 201 223 0.97

7 18 0.27 22 6.0 0.7 2 23 230 250 229 250 0.91

8 18 6.3e-07 5.2e-05 23.7 1.2 3 23 258 278 257 278 0.98

9 18 0.01 0.82 10.5 0.3 1 23 366 388 366 388 0.93

10 18 0.00045 0.036 14.7 1.4 3 23 396 417 395 417 0.96

11 18 0.00019 0.016 15.8 0.9 1 23 423 445 423 445 0.97

12 18 0.003 0.25 12.1 1.6 1 23 449 471 449 471 0.98

13 18 1.8e-05 0.0014 19.1 0.3 2 23 478 499 477 499 0.97

14 18 1.2e-05 0.001 19.6 0.3 1 23 505 527 505 527 0.98

15 18 0.35 28 5.6 0.7 1 23 533 555 533 555 0.96

16 18 4.3e-06 0.00035 21.0 0.9 2 23 562 583 561 583 0.97

17 18 6.4e-07 5.2e-05 23.7 0.7 1 23 589 611 589 611 0.98

18 18 4.8e-06 0.0004 20.9 2.7 1 21 617 637 617 639 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.001	0.085	13.5	0.3	1	21	31	51	31	52	0.94
2	18	1.6e-05	0.0013	19.2	2.8	1	23	88	110	88	110	0.98
3	18	0.00034	0.028	15.1	0.0	2	23	115	136	115	136	0.97
4	18	4.4e-05	0.0036	17.9	0.6	3	23	144	164	142	164	0.96
5	18	4.6e-06	0.00038	21.0	0.1	3	23	172	192	170	192	0.97
6	18	1.9	1.6e+02	3.3	6.1	1	23	201	223	201	223	0.97
7	18	0.27	22	6.0	0.7	2	23	230	250	229	250	0.91
8	18	6.3e-07	5.2e-05	23.7	1.2	3	23	258	278	257	278	0.98
9	18	0.01	0.82	10.5	0.3	1	23	366	388	366	388	0.93
10	18	0.00045	0.036	14.7	1.4	3	23	396	417	395	417	0.96
11	18	0.00019	0.016	15.8	0.9	1	23	423	445	423	445	0.97
12	18	0.003	0.25	12.1	1.6	1	23	449	471	449	471	0.98
13	18	1.8e-05	0.0014	19.1	0.3	2	23	478	499	477	499	0.97
14	18	1.2e-05	0.001	19.6	0.3	1	23	505	527	505	527	0.98
15	18	0.35	28	5.6	0.7	1	23	533	555	533	555	0.96
16	18	4.3e-06	0.00035	21.0	0.9	2	23	562	583	561	583	0.97
17	18	6.4e-07	5.2e-05	23.7	0.7	1	23	589	611	589	611	0.98
18	18	4.8e-06	0.0004	20.9	2.7	1	21	617	637	617	639	0.95

Sequence Information

Coding Sequence: ATGTCGACGAAAAGCAATCCTGTTCGGCAGAACGTATTAAAAATAGTTGAAAAAAAAGAGTCGCGATTGTCGAACAAAAAAATCGAAAAATATGTTTGTGACACTTGTAAAGAGGTCTACAACTCCAAAAAATCATTAATTTTGCACTTGAGTAAGTGTCAAAAGAGCACTCCTCTTAAACGTCAAAAAAATCGACGTCAGGATATGAAAAGCCCCGAAAAATCTAGTTTCAAAGTCACACAAATGAATCTTTTCGACTCGTTCGAGTGTGACGAGTGCCATAAAATTTTGAAGAAAAAACGTTATTTACGTGTACATATGCGGGTGCACTGTTGTCCTCGCGTATGTGACGTCTGCGGCGTTGTTTTAGCCTCGGAAGTTAGTTTGGAACAACACATGAGACGTCACAGTGGGGATTATTCGATATTTTGTGAAATTTGCAAAAAAGGTTTTTACGACAGAGCAACGTTAAAACTCCACATGACTTCTCACACCAAAGAGAAAAATATAGCTTGTGAAATTTGCAGCAAGGCTTTCGCCAATCGTGTTTATCTCAGGAGCCACATGAAAATTCACGTTGATCCAAAAACGCGTAAAAAATACAAGTGCGATTTGTGCAAATTCGAAACTTTTTACAGCTATTGTTACAAAGAACATCGCGAAACTCATACCGGAGAAGGCAAAATGTCTTGCGATATTTGCGGCAAATTAATCCGTCGACAGTACATGAAGACACACGTGAAAATGCATAAGGGAGAAAAAAATGAAATTTGCGAATACTGCGGTAAAGGTTTCATTTCTAGAAAATATTTGACCAAACACAGACGCACTCACACCGAGTCTGTGGTTTTCAGGTGCGATCCGGAGCAGGATTCGAGGGAGCTGCTTGCCGACGAGTACATAAATGCCTTAGGGGAGTCACAATATCTCGAGGGATTTGAGGCGTTCGAGGATGACGAAATAGTGTATGAAACGCTAGAATACGAGGAGATCGAGGTGAAGCATTCGGAGTCATTGGAGATGGTCGGTTCGAAAGTTTCAAAGCCACGAATAGTGAGCGATGAAATATTGAAACCGCGTAAAGTACGAAAGCTGTACGAGTGTGAGGTTTGTGGAAAAATCATGAGAAAAAAGAGGCAGTATGTGCGGCACAGTGGGATTCACGAGTTATCGGGAGTGGGTAATTGCGAGGATTGCGATCGAATTTTCCACGACGAGGAAAAGTATCGTAAGCACATGATCAGAGAGCATCAGGAAGAATCGCCGTTTCCCTGTTCCCTCTGCGGAAAATTGTTCAAAACCGAAGAATTTTTGAAGACTCACGCCAAGCAACACAACAGAAAATTCACGTGTGACATTTGTGGTATCACAAAATGTACCGCTTACGATATTCGACTCCACATGAGAAAGCACAACAAGGAGTACGAAGTTTATTGCGACATATGCAACAAAGGCTTTTACACGAATCAAACTCTGGAAAGACACGCTTTGACTCACACCGGTGAAAAAATATTTGTCTGTAAAATCTGTAAAACTCCATACGCCAGTGCGGCATATTTGAGTACGCACATGAAAACTCACGGTCCTCGAGAGAAGTATAAATGCACTGTTTGCAAATTTGAGACTTATTGGAAAGGCGCCCTCAAAGTTCATTCGAAAATACACACCGGTGAGAATCAAATGAGTTGTGACATTTGCGGCAAAACTATATCGAGCAAACATTATCTCGCTAGTCACATGAGAATACATTCCGGTGAAAAGCCTCATGTTTGTGACATTTGCGGCAAAGCTTTTACCATACGAAAATATCTCGTTGTTCACATGAGAACTCACACCGGAGAGAAACCGTACGAGTGCAAAATATGCCAAAAAAGATTCACCCAACAGGGCTCTTTGAACGCTCACATCAAGTGTCACGGCGATCCCAAGTAA
Protein Sequence: MSTKSNPVRQNVLKIVEKKESRLSNKKIEKYVCDTCKEVYNSKKSLILHLSKCQKSTPLKRQKNRRQDMKSPEKSSFKVTQMNLFDSFECDECHKILKKKRYLRVHMRVHCCPRVCDVCGVVLASEVSLEQHMRRHSGDYSIFCEICKKGFYDRATLKLHMTSHTKEKNIACEICSKAFANRVYLRSHMKIHVDPKTRKKYKCDLCKFETFYSYCYKEHRETHTGEGKMSCDICGKLIRRQYMKTHVKMHKGEKNEICEYCGKGFISRKYLTKHRRTHTESVVFRCDPEQDSRELLADEYINALGESQYLEGFEAFEDDEIVYETLEYEEIEVKHSESLEMVGSKVSKPRIVSDEILKPRKVRKLYECEVCGKIMRKKRQYVRHSGIHELSGVGNCEDCDRIFHDEEKYRKHMIREHQEESPFPCSLCGKLFKTEEFLKTHAKQHNRKFTCDICGITKCTAYDIRLHMRKHNKEYEVYCDICNKGFYTNQTLERHALTHTGEKIFVCKICKTPYASAAYLSTHMKTHGPREKYKCTVCKFETYWKGALKVHSKIHTGENQMSCDICGKTISSKHYLASHMRIHSGEKPHVCDICGKAFTIRKYLVVHMRTHTGEKPYECKICQKRFTQQGSLNAHIKCHGDPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00263697;
90% Identity: iTF_00263697;
80% Identity: -