Cson004557.1
Basic Information
- Insect
- Campoletis sonorensis
- Gene Symbol
- -
- Assembly
- GCA_013761285.1
- Location
- JACEOJ010000110.1:1029001-1031788[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-08 1e-05 25.4 0.0 10 39 2 30 1 35 0.91
Sequence Information
- Coding Sequence
- ATGGAGGCTGTCAAAAATGGACTTTCGCTGAGAAAAGCCGCCGCACATTTCGCCGTTGCCAAATCCAGTCTCCATCGTTATCTTCGTCTAGATGGGAACGTGATGGGTTATTTGAACTCGCCGAGGGTGACGTACTCTTGCAAAAATTGCGGCAAGATTTACAACTACTATTCGAGCTTGGCGAGACATTTGAAGCACGAGTGCGGCGTTGAGCCCAAGTTCCATTGTCCACTGTGTCCTTACAGAACGAAGCATAAATCGAGTCTCAATACTCATCTGAACGGGAGGCACATGAAAATCTTGAACGATTTTTACACGATACCGAACGGCAACGAGACCGCTGCTCCTTCGGACGGAAAGGATTTAAAAAGCGGTCCTGAAATTATTCAGAAGATCTACGGTCGTAAGTTTCTCTGCCCAAACTGCGCCAGATCTTTCGATGCCGAACAATGGCAGAAACATCAGATGAAGGATTGCAAGAGACCACCAATTATGAATTGCCCTCACTGTTGTCACTACAAGAGCAAAAAAATGTATAATTTACGCAGACACATTTTGCACATCCACGGTTTAATCATCAACGAGATGTACGGAATGGGATCTTATCCCCGCAGGTTGCGCGGACAGGGACCTCTGGTTTGCGAGAATTGTGGGAGGCGCTATCATCAGGCGAAAAATCTACGAAGGCATGTTATGAATGAATGCGGCAAGGAGCCAAGTCTCCAATGTTCGTACTGTCCTTACAGAGCAACGTACAAATCGTACCTTGAAATTCACATGACGAAACACACGAGGAATCAGCAAACGGGAGCAATGTGTTTCAATCCTTACGAGAATCCATGA
- Protein Sequence
- MEAVKNGLSLRKAAAHFAVAKSSLHRYLRLDGNVMGYLNSPRVTYSCKNCGKIYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKILNDFYTIPNGNETAAPSDGKDLKSGPEIIQKIYGRKFLCPNCARSFDAEQWQKHQMKDCKRPPIMNCPHCCHYKSKKMYNLRRHILHIHGLIINEMYGMGSYPRRLRGQGPLVCENCGRRYHQAKNLRRHVMNECGKEPSLQCSYCPYRATYKSYLEIHMTKHTRNQQTGAMCFNPYENP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00263848;
- 90% Identity
- iTF_00263848;
- 80% Identity
- iTF_00263848;