Cson011827.1
Basic Information
- Insect
- Campoletis sonorensis
- Gene Symbol
- ttk
- Assembly
- GCA_013761285.1
- Location
- JACEOJ010007729.1:2569-5929[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-12 5.1e-09 35.9 0.1 1 45 360 404 360 404 0.95
Sequence Information
- Coding Sequence
- ATGCCTTTCCCGGGAGAACAGCTGTTTTGCTTGCGATGGAACAATTATCAAGCAAACATTGTCGAAGTTTTCGACAGATTGTTGAGCGACGAGACCTTCACGGACGTGACATTGGCGCTTGACAACGGACTCCGCGTGAAATGTCACAAAATGGTACTAGCGGCATGTTCCACATATTTCCAGGGCTTATTCTCGGCTTTACCCTGCGCACATCCAATAGTTGTGCTGAAGGATATAACGTACACGGAAATAAGAGAAATTCTGGAATTCATGTACACCGGACAAGTGAAGGTCGCCGAGGATCGTTTGGCCCAATTCGTAAGAATTGCAAACATCCTTCAAGTCAAAGGTCTCATGGCCAACAGCACGTCCTCATTGACCATCGCCAGAATATCACCCTCTGGTCAGGAAACGATCGAGTTACATCCACCAGCGGAGGAGAACGCCGAACAAACACCTGAGAACATCGAACCTGTTCCTGGACCATCTTCTGCCCCACATTCGACCAGTTCGCCTCATTATGGACACGACAAATCAACAAAAAGAAATCAACGATCTCCTTTACCAATGTGGCCAATAGTACCGACTCCACACAATTCACCGCTCGACTTGGCCGCCTTACAAACATCCCTCGCAATGAACCACTCGCTCTTCTCTTCGCACTACGATAATCCTCTCGAACCAACGGCCTCCACCAGTGGAACACGAAAACACCGATCATCGGGAAGCAAGAAAACTAACAGAAATCACGACACACCGATTCTCCGCACCGTTCTTGGTCTCAGTCAATCCGACAGCTCGATGTTACACAACCGTTCGGATCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTAGACGCCACAACATGGAGACACCCGATGAACAAACTGCTGGTAGCTCACACAACGCCGATGCATCCATGATTATGGCCGATGACAGAAGACCTCCACCTCCCTCGTTTCCCGGCTTGTCAGGACATTATTTAGCAGCCACGCCCGTACCAGCCCAAAGACCAGAATGGAAACGCTACAAGCAATACACAAGAGAGGATATAAGCAACGCAATTGAGGCTGTAAGATGTGGTATGAGCGCACTTCGAGCTGCTCGACAGTACCGCGTTCCCTCGAGGACCCTTTACGACAAAGTTAAGAAACTTGGTATAACGACGTTAAGACCTGTCAGACGCTGTTCAACCAGTCCCGGAGCTTCATTCCCACACGGGATCGGTTGCAACGTTAACGGAAGTATTTACAGAAATGTACCGGAGATCGAAAACAACAACAGCACCGTACTAATGGATAATCCTGCGGCATTACTCGAAACCGCCTTTGCCGAATCACGTGACGAATCGAGAGATCGTGAATCAATGATGGAAGCTCCACGAACCAGTCCAAGTCCTCAACCGTTGCCTCTCTACGCACATCGATCAAGCTCAGCCGAAAGAATGCCGCCTCAAGAAATGACCGACGACATTACGGATCAAGTCGAAGATCTTTCGATCAATCGCAGATCCGAAGATCGCGACGACATCACCGAACGTCACAATTAA
- Protein Sequence
- MPFPGEQLFCLRWNNYQANIVEVFDRLLSDETFTDVTLALDNGLRVKCHKMVLAACSTYFQGLFSALPCAHPIVVLKDITYTEIREILEFMYTGQVKVAEDRLAQFVRIANILQVKGLMANSTSSLTIARISPSGQETIELHPPAEENAEQTPENIEPVPGPSSAPHSTSSPHYGHDKSTKRNQRSPLPMWPIVPTPHNSPLDLAALQTSLAMNHSLFSSHYDNPLEPTASTSGTRKHRSSGSKKTNRNHDTPILRTVLGLSQSDSSMLHNRSDPXXXXXXXXXXXXXXXXXXXXXTRRHNMETPDEQTAGSSHNADASMIMADDRRPPPPSFPGLSGHYLAATPVPAQRPEWKRYKQYTREDISNAIEAVRCGMSALRAARQYRVPSRTLYDKVKKLGITTLRPVRRCSTSPGASFPHGIGCNVNGSIYRNVPEIENNNSTVLMDNPAALLETAFAESRDESRDRESMMEAPRTSPSPQPLPLYAHRSSSAERMPPQEMTDDITDQVEDLSINRRSEDRDDITERHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00262772;
- 90% Identity
- iTF_00263361;
- 80% Identity
- iTF_00263361;