Crap011244.1
Basic Information
- Insect
- Campoletis raptor
- Gene Symbol
- -
- Assembly
- GCA_948107755.1
- Location
- OX403624.1:6545325-6552833[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1 91 3.8 1.0 5 23 599 618 596 618 0.87 2 14 0.035 3 8.4 0.7 3 23 626 647 625 647 0.94 3 14 0.011 0.91 10.0 0.9 2 23 1349 1371 1348 1371 0.96 4 14 0.053 4.5 7.9 0.2 2 23 1408 1430 1407 1430 0.91 5 14 0.023 1.9 9.0 0.3 3 23 1493 1514 1491 1514 0.94 6 14 0.00019 0.017 15.5 1.8 1 23 1636 1658 1636 1658 0.96 7 14 0.0017 0.15 12.5 1.3 3 23 1818 1839 1816 1839 0.89 8 14 2 1.7e+02 2.9 0.6 2 21 1871 1890 1870 1893 0.87 9 14 5.3 4.6e+02 1.5 0.5 1 22 1900 1921 1900 1921 0.92 10 14 0.0097 0.83 10.2 1.7 1 20 1926 1945 1926 1949 0.89 11 14 0.028 2.4 8.7 3.3 1 23 1956 1979 1956 1979 0.95 12 14 3.1 2.7e+02 2.3 3.6 1 23 2125 2148 2125 2148 0.94 13 14 0.93 80 3.9 0.3 3 23 2155 2175 2154 2175 0.91 14 14 4.7 4e+02 1.7 0.3 3 23 2258 2279 2257 2279 0.89
Sequence Information
- Coding Sequence
- ATGTTACGTCCAAGAATCCTTAGTAACTACAATTACAAAAGACGAGATACCGATAAGAAGGGAAAAGAAGACGAACTGGACAATCGTCGGGCAATGATGTCTCAGGTAGAAAAAGTTCGTCCCAACTACGCGGAATTAAAGATTGACAACAATATTGCAGGCAATAATCAAAGAGAACAGAGGCAGCAGTTTGAAATGGAAGTTTCCGTTTCCGAGGAGGTGAGACACAATGTTACAATTGAATTTCCGCTATTGGAAACATTTTTGGGTCATGGGAAATTTGAGAGCGATCAAGCCTTCGAGGTATTTCACCAAGATTCGTCCTTGTTCCAGCAATCTCTTACTTGTAGGAGTGAAAAAGTAGTGCAAACAACTACAAAACGTTCTATCAATGTCATGCAGTTGGCGCCTCATTCTTCTGCACAAGTATGTCAGTTAGTACCCAAATCTTCTGACGTAGTAACACGGTGCATTAAAAACTCATCTGACAAAGGTGGGCAATTAAAAAATGCATCATCCATGAGGATTGGAAAATTAGGGCAGAATTCAGCCTCAAGTGGAAGGAAATTATCCGTCTCTCATTCTTCCGGAAGGGTTGTAAAGTTGGTACCGCATTCGTCGACAAGGGTTGCGCATTTAGTCTCAAATTCGTCTACGAGAGTTACTCGTTTGGTAGAAAACTTTCCAAAGACTATTTCTTCGTTGGTACCAATTACATCTCCCAGGTCATCGCAATTATTGACAGAAGTTTCTACAGATGGTGAGCAATTGCGAGATAACTCACTGACAAGAGTAGCAAACTTAATGTCGAATACTCCTGCGCAAACAACTCAATTTTTACCAACAAGTTCACCTAAAATTGGACAAACTGCACCCCGTTCGCCTAAAAAAGTTCCATCGCTCGTTAAATTCTCTTCGACCAAAGCAACTGGTTCAACACAGAATTCATCAATGTCGTTAATGCCACGATCTCTGTCCAAACCTTCCATAAAATCGATAGAGCTACTGACGAAAGGAGACAACAATTCTAACGTTGTTATGGTCTTACCTGTCTCTGGAAAAGAGACAAAAGCTATTCAGTCCCAGACCATGCGCAGGCTCGAAAAGATACAGCATTGGAAGGATGTGACTCGAGTGCAACAAGTTATTGGTGTACAACGCCAGCACGGTACTTCTGAAAATAATTCTTTGGCAAATGATATTACAAAATTGGAAATTGTTGCGCCAGAGATAGTTGAAACCAAAGTCGAAGACAATGTGTCTGAAGCGTTGTGTACAAACGTAGAGGATCGAGGAGATAACATCGACAGTAAAGAGGAGATTCCAGAAACCCATGACGTACCTTTGTCCAGAGAAACATTTGAGGCAGAAAAAGTTGTTATAGAGAGCGAGATGTCATCGGATGGAACAAAGTCTAAAAATGATCTTGATACCGTGAACAAAATATCTTTGACAGCTCAGGAAACCGATACGAAGGGACCTCAATCTGACGTGGAGGTGGTTCATGTGCAAGAAACCACTAATAAGCCTAAACGTTGTAGGAAACGGATCAGAAATTCTGTTTCAAATAGAAAGAAAAATGAGCCGGAAGATTCCGGCAACAAAACAACAAGAATGACGACGAGAATGAAGAAATCAACGATGCTCGCAACCAGAAGAAGAAATAACAGATCGTCTGCAAGACCGAATCAGGCAAAGCCACAAATATCGGCACTCGCAAGAATGCAAGGTCAGTTATTAAATATAGTAAGTTTGAATGTTCCAGTACGAAATAGATGGCAAGCTGAGTGTATCATATGCAAAGATCAATTTACGGACAAGTACGAATTTCATCGTCACATAACACTCGCCCATCCTGGTATTCGCATAGTATTTTGCGAACTGTGTAACGCTTCGTTCCGCACGGACATTGAGCTGAAGCAACATCGTTATTCATATCATAAAATAACAGTTACTAAGGACGCCAAAAACAATTTGGTGAAGCTCGAAGCGCCGATGAAACCAATTGTTGATTTGGAAAACGAGTCAGAGCGTCCGAAACCGAAGACGAAAAATTTGGACGAGGGTAGACTTCAAAATCGTAAAAAAATTGTGAAGGAAGGTTCAGCCAAGTTCGAATCTATCGCAGGACGTTCCAACGAGAATTTTCGGTCTCATTCGATGAAGAAAAGAGTCACTGTTTCTTGCATGAAAACGGAAAAATCTAAAAGAAATTCCCAACTCAATTCAGTCCCGATCGGTCCTCAAAAAACAAAATCGCAAAAGGAGGCCAAGAAATCAAAATACAGTTACGTCGACATCGATATCATTGGCCACAAAGCCATAAGCACCAATGAAACATTCGTTAACGCTGAAATGCGAAAATTGATCATACCGATCGTGAGAATAGAGACCAATTTAGATTCTACAGGAGCTAACGATCATAAAAATTCATTGGACACCAAGGAAAAACCCACGATTCTAACGAGCCGGAAAAAAAAATTCGTCAACTCGAGTTCAAAAAGAGTGAGCAAGAAGTGTGTGAGACGTGCGTCTAGATTTACAGTAAGAAAACGACGAAGAGCTCACCGTTTAAAGGAAACCCTTGAGGATGAAAAAAAAGTGACAAGTAGTCACGACCCAAAAGTTGCCCAACTGGATATTTCCAACGTAGCAGATGCTGTGGCACCGCGAAGGAGATTAAGGAGTCGAAAAGAAAAGAAATCACTTGACTGTAATTCCGAGGAGAACTCAAATAACAAGCTTGCGAAAATCGAGCCGTTAGACGATGGTATGGAGACAACGATAAATAAAGAAATCAAAAAACCCGAGGAACCTGCTTCGGATAATTCTCGATCCAGTCAGAATTTTACATTGATCGATATCGAGAACGAGCCTGAAGTTGCTGAAGTAGTTCAGGAACAACGAATTATAAAAAAACTAGTATCGCGATCCTCGCTCTCAACTTGTTCAACAAATTTCGACGATAATTGTCCTCAAGATGATCCGAATTTCGAGGTTTTGAAAGTGCACGACGTTGACATGGAACCATTTGGTTCGCCAGAACAAAAAGTATCAGAATATAAGAATTCACGATGTTCAAGGGCGCAAAACTCAACGTCGACTGGTAGTGACGAAAAGTTGATAATTAATAAACGAGCAACGAAAGCACCAAGATTTTCTTGTCTAGATTTGTATGATGTTGATTTACCGAATAATTCTGACAGCGCGGAAAATCATGATAGAGAGCCGGATGAAATCTCGAATAAACAAGACAAAAGATCTGTGGTAAATAAAAAAATAAGAGATAAGAATAGTATCGTGAGTAGAAGAAAAAAAGGCGATAAAAGGACAAAAGAAAAAAGCGACGACCAAAATAAGTTGTCAGAGGAAAAGATCGACGGTGAAGATAATAAAGAGAAAAATCAAAACAGCAGTGATGGAAAGAATTTGGATGAAAAATCCACGGGTGATGGTAAACAGAACAACGTAAATTCCAACGAACAAGATAAATATACAAAAGCAAAGACAAGCGTAATTGACACATTACGAAAAAAACAATCGGACGATGAGGACGAAGAACCAAAGAGAAGAATCAACGACAAAGATGAAAAATCGAAAGAGAAAATCAAAGATGAAGACGACGAACAAGATGAAAAACTGAAGAACAAAGAGAAACAATTAGAACGTAAAAGTCGAGGGGAGAATAAAAAGCTTGAAGAAAAAAGTAAACACAAAGAATTATCAAATAAAAATAAGTCCGAATCGTCGAACAAAGGTGACGACGACAATCGCTCAAATAACAAAAACAACGTTGGTGTCATGGCTCGGAAAAAAATAGAAAAATCCTCAGAAACTAAAACATCAACCGATCTTTTAGAAACGCCAGCACAAAAAACATATTCAAGCGGTAAAAAATTTCTCAAAGTTTCAAAACAAAGTAAAGAATCTGAGGATAATAAAGCCAAGTCTCAAGAGCTGTGTGCAATATGCAAAGAATTGTGTACACTGATGAAAAAAGTCTCCAATCAGATGAGTGATAGGAATACGACAGATATCCCGATAAAATGTCCACTTTGCCAACGTTATTTCATCTCAATGTTCCATCTTGAGTTACACGTAGCCACGAAGCATTTGCAATGTCAGCATGAAGTTCCTTGCAAAATTGTTCAATTACCAATCGTTAAAAAACCATCAAAGAATATTGGATTAGATTGTGATACGAGAGTCGATGTGGCGATTGAGTGTCTTCGTTGCTCCGTGAAATTCAGTACAGAAAAAGATCTGACCGATCACTTGATCGCAAAACACGAAATTTGTTATCCAAACGACAAATCGTCAAACGTGTATCCAAAATATGTCAGAGACTCGCGAACTTCTTTGTTGGAGACAAAAGATCAGAAAAATGTTGTGACTGGGAGCAAGAGTGACGAAGTATGTGATTCGAATTCGACATTAGAAACTCATGGAAATCAAATGACTCCAGCAACATTGGATTGTTCTCTTTGCGATGAGAAATTCGTTGAAAGTACGAAATACGTTCGTCACGTACGCGAAATGCACAACGCGCCCAAGACTTGGTCGCCCCATCATCTAAAGACATACTCTACAAAATCATTGAGCAGTAAAGATAAGTTATGTTCATTGTCCACGGAAGCGTCTCCAAAAGTGTTGGAAGGCTCGAGTATACACAACGTTGAAAAACTTGAAAAAGCAAAAGAAATTGAACAGGCCGATCGGGTGACATCCGATCGCGATTACGTGCTTAAGCAACTTTTATCTGATGATTCGAGCAACGAGGATAACGACTTGGAACAAAATGTCAAAGTCAGTTGTGCTAAAAGCTCTTCGTTCAAAGGACCAACGCAACAGGGTATCGTTCAAAAACCCGCAGACAAAAACGTTGCTTATCGTTCGTCGAGTTGTCACAGTTGTGACATTTGCCAAAAGAAATTCAAACGAGCCCAAGATTTATTGTTACATCAAGTAAGTCACATCAACGGCCAGACTCCAAAGGATAATCAGAACGGGGAGAATGAAACAAAAACCTCGCGCAAAGGTCGTTCGAAAGTATCCGTTCAGTCGGATTCCGGGGACGATTTCGAGGAATCTGAGAGCATGGAATACGATGAATTCTCTCCAATGAAGGAACAAGTGTTCGTTTACCATAGAAAAAAAAATCGGGACAACGCAGCAGTTTTATTTGGTACAAACGGAGCTAGTGAAAAAGTCGTGGTTGGTTCAAAGAGACAAGCAACCCTGGCATCGTACGAAATGTCTGAAATTCCGAAAACCGAGGAAAAAGGTATTCCAGTTAAAAAGCATAAAGTTTCCAGTGCCAATACATCATGGGACGAAAGTATCAAACCGACAGGACCAGAACCTCGGGATGCAAGGAAATATGCAATGAAGCAATTGATAGAGACAGAAGTGGGTTTAACCGATGAAATCGACAAAAAATTGCCAATAGCTTGCGAAAAATGTAACAGACATTTTGCCAATCGATCGCTATTGAACGAACATCTGTTTTTCCTTCACGACGACAGCCTCAAAGACACAGTCCTAACCGATGTACTGACTCAAATAGGAGGTTTGCGAGGTACTGACGATAACGAGTCGTCCCAACGTTGGAATTGCGAGATTTGTGCACAAACTTTCAAATTGTACCAGGGCTACAGTCGTCACAGATTTTTCGTGCACGGTGACGATTCGATGGTTCACGTATGTGGTAATTGTTCGAAAGTAATGACTAACGTAACAATGGTAAATGTTCATATTTGTACGGACGTTGCATCGTACAAATGTCACATCTGTAAAGAGACATTTCCCACTGGAATGTCATTGAGATTGCACAACACAGAGAAACACATAGAGACGAACGGACCTCACAATTGCGAGGTCTGCAAAAAGAAGTTTCTTACTAACGGTATGTTGGAACGTCACAAAAACAGCAAACATCTTGGCGTCAAAACCTATCAAGGTAGAAAAGATAGTCCAGTGCGTTTAGCAACAGCGGATACGACGAACCAGGACGATCTTGGAGAACCAGTGAACTCGGAGAAACGTATCGATCAAGACATCGATAAAACTTTAACGAAACAAAAGGAAGAAGAGGATTCGATTATGGCATGCGATCCATTTGCTTTGCGACGGGGAAGGTGGAGATCTTGCAGAAGTAAGAAAAAGGTCGAGGAGGAAAGTCCTGTTACTACTCCAAAGAGTCCGAATCTCGTTGGAGGCCAGAAGAGGCGAGGAAGGCCGCGAAAATATGCATTGCCCGAGGAAGAAACATCGCCGAAACAGCCACAGGGAGCGAACAATGAGGAAGACAATTTCAAAGAACGTCCTATCATTCATAGAGGCTCCGTGTTGTACATCGACGAGACTGAGATTCATCAGTGCGGTTTGTGCCAGTTGTATTGTCTTTCTAGATCCACTCTAAGGAATCACATGGTGAAAATTCACTCGGCAACCGACGAGATCTGCCAACTGTGCCAGAAAATGTATCCAACCGGTAAATTGATACGCCACATGATAGAACGTCACATAACTTCGGAAGATGGTGAAGTTTTGGGACCAGAAACGAGCTGGCGAATAGGTACAAACAGCAATGAAATCGACGCGGAAATATTGATTAAAATGTTGGGTATCGACAGGCTCGTTTCTCTCTGCGAATATCGAAGATATTCAGAAAAAAATCGTTCAAATTCTTATCCGTGTGTACCCTGCAAGAAATACTTTGCCAGTCACGAACTCTACAAATATCATTTTTTACTGCATCACGATGCTATTTGCGCACTTTGTAACATTGAATTCAAAACGGGCCACGATGCTGCAAGACATAAAAGCGAAATTCACGGATCTGTTGGACGTTACATCTGGTTCGCTGATAGAACAATTACGGCGTTGACTTCCACGAAAAATTTCACTGACGCCACCGAGAGTATCTTCATGGAAAGGATTGCGAGAGAAGAAAAAGTGGGTAATGACGAAGCTGAAGAAATCGACGAGGATGAGGAGCAACGTTCGCTTGACACTAAAGTTCTGCTTTCGAACGACGTCACCAAGAATAGTGAAACTTTTTCCAAAGAAATGATATATGGCGAGGGTTGTAACGTCAAGGAAGGAGAACAAGTTACGACCAACGAAGAAATTGGTGACAGGGATGAAAAATTAAGACTCAATCTAGACACGACTGGAGAAATTGTCGGAACACCTAAAACCACAGAAAAATCAATCGAAACGACGCTACATACTCCTACGAATCCTGTTACGACGATTTCAAGCGAGGATGAAACAATGATCGACAATCGTTCCTCTGCTTCTGACGATTTCATTTCGTCCGATGATGTGCACTTGATCATTGTCGTTACTGACGACGATCTCAAAAAATTCAACATTACCACACGACATCCCAACATTTGGGGTCTCGCTGCAAAGATAAGTTCAACCTACGAAGGTATCACACCCAAACAGGTCAAAGATATGCTGGCACATCATTTCGAAAGAGAGGAAGATTTCGACTCATAA
- Protein Sequence
- MLRPRILSNYNYKRRDTDKKGKEDELDNRRAMMSQVEKVRPNYAELKIDNNIAGNNQREQRQQFEMEVSVSEEVRHNVTIEFPLLETFLGHGKFESDQAFEVFHQDSSLFQQSLTCRSEKVVQTTTKRSINVMQLAPHSSAQVCQLVPKSSDVVTRCIKNSSDKGGQLKNASSMRIGKLGQNSASSGRKLSVSHSSGRVVKLVPHSSTRVAHLVSNSSTRVTRLVENFPKTISSLVPITSPRSSQLLTEVSTDGEQLRDNSLTRVANLMSNTPAQTTQFLPTSSPKIGQTAPRSPKKVPSLVKFSSTKATGSTQNSSMSLMPRSLSKPSIKSIELLTKGDNNSNVVMVLPVSGKETKAIQSQTMRRLEKIQHWKDVTRVQQVIGVQRQHGTSENNSLANDITKLEIVAPEIVETKVEDNVSEALCTNVEDRGDNIDSKEEIPETHDVPLSRETFEAEKVVIESEMSSDGTKSKNDLDTVNKISLTAQETDTKGPQSDVEVVHVQETTNKPKRCRKRIRNSVSNRKKNEPEDSGNKTTRMTTRMKKSTMLATRRRNNRSSARPNQAKPQISALARMQGQLLNIVSLNVPVRNRWQAECIICKDQFTDKYEFHRHITLAHPGIRIVFCELCNASFRTDIELKQHRYSYHKITVTKDAKNNLVKLEAPMKPIVDLENESERPKPKTKNLDEGRLQNRKKIVKEGSAKFESIAGRSNENFRSHSMKKRVTVSCMKTEKSKRNSQLNSVPIGPQKTKSQKEAKKSKYSYVDIDIIGHKAISTNETFVNAEMRKLIIPIVRIETNLDSTGANDHKNSLDTKEKPTILTSRKKKFVNSSSKRVSKKCVRRASRFTVRKRRRAHRLKETLEDEKKVTSSHDPKVAQLDISNVADAVAPRRRLRSRKEKKSLDCNSEENSNNKLAKIEPLDDGMETTINKEIKKPEEPASDNSRSSQNFTLIDIENEPEVAEVVQEQRIIKKLVSRSSLSTCSTNFDDNCPQDDPNFEVLKVHDVDMEPFGSPEQKVSEYKNSRCSRAQNSTSTGSDEKLIINKRATKAPRFSCLDLYDVDLPNNSDSAENHDREPDEISNKQDKRSVVNKKIRDKNSIVSRRKKGDKRTKEKSDDQNKLSEEKIDGEDNKEKNQNSSDGKNLDEKSTGDGKQNNVNSNEQDKYTKAKTSVIDTLRKKQSDDEDEEPKRRINDKDEKSKEKIKDEDDEQDEKLKNKEKQLERKSRGENKKLEEKSKHKELSNKNKSESSNKGDDDNRSNNKNNVGVMARKKIEKSSETKTSTDLLETPAQKTYSSGKKFLKVSKQSKESEDNKAKSQELCAICKELCTLMKKVSNQMSDRNTTDIPIKCPLCQRYFISMFHLELHVATKHLQCQHEVPCKIVQLPIVKKPSKNIGLDCDTRVDVAIECLRCSVKFSTEKDLTDHLIAKHEICYPNDKSSNVYPKYVRDSRTSLLETKDQKNVVTGSKSDEVCDSNSTLETHGNQMTPATLDCSLCDEKFVESTKYVRHVREMHNAPKTWSPHHLKTYSTKSLSSKDKLCSLSTEASPKVLEGSSIHNVEKLEKAKEIEQADRVTSDRDYVLKQLLSDDSSNEDNDLEQNVKVSCAKSSSFKGPTQQGIVQKPADKNVAYRSSSCHSCDICQKKFKRAQDLLLHQVSHINGQTPKDNQNGENETKTSRKGRSKVSVQSDSGDDFEESESMEYDEFSPMKEQVFVYHRKKNRDNAAVLFGTNGASEKVVVGSKRQATLASYEMSEIPKTEEKGIPVKKHKVSSANTSWDESIKPTGPEPRDARKYAMKQLIETEVGLTDEIDKKLPIACEKCNRHFANRSLLNEHLFFLHDDSLKDTVLTDVLTQIGGLRGTDDNESSQRWNCEICAQTFKLYQGYSRHRFFVHGDDSMVHVCGNCSKVMTNVTMVNVHICTDVASYKCHICKETFPTGMSLRLHNTEKHIETNGPHNCEVCKKKFLTNGMLERHKNSKHLGVKTYQGRKDSPVRLATADTTNQDDLGEPVNSEKRIDQDIDKTLTKQKEEEDSIMACDPFALRRGRWRSCRSKKKVEEESPVTTPKSPNLVGGQKRRGRPRKYALPEEETSPKQPQGANNEEDNFKERPIIHRGSVLYIDETEIHQCGLCQLYCLSRSTLRNHMVKIHSATDEICQLCQKMYPTGKLIRHMIERHITSEDGEVLGPETSWRIGTNSNEIDAEILIKMLGIDRLVSLCEYRRYSEKNRSNSYPCVPCKKYFASHELYKYHFLLHHDAICALCNIEFKTGHDAARHKSEIHGSVGRYIWFADRTITALTSTKNFTDATESIFMERIAREEKVGNDEAEEIDEDEEQRSLDTKVLLSNDVTKNSETFSKEMIYGEGCNVKEGEQVTTNEEIGDRDEKLRLNLDTTGEIVGTPKTTEKSIETTLHTPTNPVTTISSEDETMIDNRSSASDDFISSDDVHLIIVVTDDDLKKFNITTRHPNIWGLAAKISSTYEGITPKQVKDMLAHHFEREEDFDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -