Crap014435.1
Basic Information
- Insect
- Campoletis raptor
- Gene Symbol
- -
- Assembly
- GCA_948107755.1
- Location
- OX403622.1:32597202-32600410[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00055 0.047 14.1 0.5 2 23 23 44 22 44 0.96 2 9 9.9e-06 0.00084 19.6 0.2 1 23 82 105 82 105 0.98 3 9 4.3e-06 0.00036 20.7 0.5 3 23 113 133 111 133 0.97 4 9 0.00022 0.018 15.4 4.3 2 23 140 161 139 161 0.96 5 9 3.5e-07 3e-05 24.1 0.7 1 23 167 189 167 189 0.98 6 9 0.021 1.8 9.1 3.4 1 23 222 244 222 244 0.97 7 9 0.00014 0.012 15.9 1.1 1 23 611 633 611 633 0.97 8 9 4.7e-05 0.004 17.5 1.1 1 23 640 663 640 663 0.96 9 9 1.5e-05 0.0013 19.0 0.1 1 23 671 694 671 694 0.97
Sequence Information
- Coding Sequence
- ATGGATTCCATAAACAATGATTCCAGACATTTTCCGTTGAGCGAAAACAAAAAATCTGGCTCTCTTAATTGTTCGATATGCGACAAAGAATTTATGAACGAAAAGAGTTATTTTGGACATTTAAGAGTTCACAGTAACCAAGGAGAATGGATTTGCAATGGTTCTCCAAATTCAGAAGATATTTTGGAGCCTGAATCACAACTGAGAGGCAATGAAATATCTTGGCACTGTTTGTCAAAGCCTTTTAAATGTCCAATATGTGAAAATGTGTTCGATCGAGCTTCGCAGCTTGATTATCACCAACGAAGCGTGCACCTGGGAGAAAAGTCTCAAATTTGTCAGATTTGCGGAAAAGGATTTTTTCGCAAGAATGATCTGCAAACGCACCTCAACGTTCATCTGGGCACGAATCAATTGATTTGTGAAACATGTGGAAGAAAATTTAATCACGTTTCCAATTTGATCAGACATTGTAGAACTCACGCAGGCTCAAAACCTTATCCTTGCACTATTTGTGGCAAACGTTTTACTCAAATAAGCTCTTTGTCGAGGCACAAAAACATTCATGCACCAAAGTTGAGCAGGGAAAAAAGAAAAGAGAAAACAGACATTGTTCTCAGCGGCGAAGAATCAGCGACTAAAAGAAAAAGCACCAAACGTCAACATTACTGTCGTTTCTGCGGTGAAACTTTTCAATTTATGATTTTGCTGAGACAGCATAAAAGAATACATTTGAAAATTCCTGAAAAATTGAACATGGAAAATTTGTATAATCGGGAAGATGATAAAATAATTTTTCATGACAATGTTGGAAATAACACCATTGGAAATCTCGTGGAATTGGACAAAATGAATTCGATCGAAATCGAACGCGACGTTAGCATTTCGGATATTCTCAGCCCTTATAATTGCAACGACATGGAATTGTCCAACGAAGAAAATCTTGAGGAAAAATTGTATGGAAATTCGTCCAAGGAAGGTTTGACGAAAGATTACGATATTGTAGAATGTCTCGAACATGTGGATTTATCGTCGAGTCATGTTCCTCAATTGACTGTATTAACGGGCCCGAGAATTCAGGAACAAAACGATAAATTTGAAGATAAATTAAACAGAATCCAGAGCGATCGAGATTATCAGGGCGAGATTACTCCGGAGACAAAAATTCCAATCAACAAAGGGTACATTCAAGTTGAAGAAATTTCAAGTGTCGACAATCTCCAAGGAATTTATTTCGAATCAAACGAGGAGAGGCCGAAAAGTGATAAAATAAACCTGCAGATCGCAGGAAAGCCAACAACGTTAGCAGAACATTTGGACTTGAGGAGAAACGAGAGTGAGATGAGGGACAAACAACTTTACGAATTAATGATCAACAATAAATGCGATGATTTCGAGGATGTTAATATTGAAAAAAACAAGGAACAATTTTTCTCAGAAATGGTTGAAAATAATAGTAAAAAGATTGATAAACAAAATGAGAAATGTGGGAATGACTGTTCGAGCGAATGTCATAGATGTTTATCCAACGTTGGTAATTGTCGAGAGGTGGAAAATTGTATGGATCAAGAAAATACGCCAATGGTTCGTCTCGTTCAGAACGAAGATGGCGAACAATTTTTTGAGCTTGTGCGAGAACCTTTGGAGTACGAAAAAAATCGAGGGAATGATAAGAATCTGGAAAATTCGTCCGTTTCCACTTTACTTGAAGAACATCCCAAAACCTCGACAACGTCGAATATAATTAACTCAAACTCTGGGGCCAGGAAAGAAAAGAAAGAGATTTGCATGGATAATGGGCCAAAAGTTGTGAAAGATCGTACTCGCAAATTTAAATGCAACGAATGCGAAAAATGGTTCTCAACCGCTTACAATTTTAAACAACACGCTGGCACCCATTTCTTCGACCAACAAAAATATCGGTGTGAACATTGCGGCCTTTCTTTCGCTTGGAAATCTACTCTAAACAAACATTTAGCAAGCAATCATCGTCCCGATGGACCACAAAAATTTGTTTGCGAAATATGTCCTAAAGTTTATAGTACGCTCTCACAAGTTAATGAGCATGTGAAGAGAGACCATTTGAAggaaagaaaccacAGGCATCGCGAGGTTAGAATTGATATTTTGGAGTATCGAATGGACGAAGACGATCCTCTTACATTGGCTGTGCAATGA
- Protein Sequence
- MDSINNDSRHFPLSENKKSGSLNCSICDKEFMNEKSYFGHLRVHSNQGEWICNGSPNSEDILEPESQLRGNEISWHCLSKPFKCPICENVFDRASQLDYHQRSVHLGEKSQICQICGKGFFRKNDLQTHLNVHLGTNQLICETCGRKFNHVSNLIRHCRTHAGSKPYPCTICGKRFTQISSLSRHKNIHAPKLSREKRKEKTDIVLSGEESATKRKSTKRQHYCRFCGETFQFMILLRQHKRIHLKIPEKLNMENLYNREDDKIIFHDNVGNNTIGNLVELDKMNSIEIERDVSISDILSPYNCNDMELSNEENLEEKLYGNSSKEGLTKDYDIVECLEHVDLSSSHVPQLTVLTGPRIQEQNDKFEDKLNRIQSDRDYQGEITPETKIPINKGYIQVEEISSVDNLQGIYFESNEERPKSDKINLQIAGKPTTLAEHLDLRRNESEMRDKQLYELMINNKCDDFEDVNIEKNKEQFFSEMVENNSKKIDKQNEKCGNDCSSECHRCLSNVGNCREVENCMDQENTPMVRLVQNEDGEQFFELVREPLEYEKNRGNDKNLENSSVSTLLEEHPKTSTTSNIINSNSGARKEKKEICMDNGPKVVKDRTRKFKCNECEKWFSTAYNFKQHAGTHFFDQQKYRCEHCGLSFAWKSTLNKHLASNHRPDGPQKFVCEICPKVYSTLSQVNEHVKRDHLKERNHRHREVRIDILEYRMDEDDPLTLAVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00263706;
- 90% Identity
- -
- 80% Identity
- -