Crap012298.1
Basic Information
- Insect
- Campoletis raptor
- Gene Symbol
- -
- Assembly
- GCA_948107755.1
- Location
- OX403624.1:22187774-22191550[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.052 4.5 7.9 0.0 1 23 367 389 367 389 0.95 2 12 0.35 30 5.3 1.7 1 19 390 408 390 410 0.92 3 12 4.6e-06 0.00039 20.6 1.5 2 23 484 505 483 505 0.97 4 12 9.7e-05 0.0083 16.5 0.2 1 23 511 533 511 533 0.98 5 12 0.00038 0.033 14.6 2.4 1 23 539 561 539 561 0.98 6 12 6.8e-06 0.00058 20.1 1.3 1 23 567 589 567 589 0.98 7 12 0.00027 0.023 15.1 1.3 1 23 595 617 595 617 0.98 8 12 1.4e-07 1.2e-05 25.4 0.5 1 23 625 647 625 647 0.98 9 12 0.0045 0.39 11.2 0.2 1 23 653 675 653 675 0.94 10 12 1.4e-05 0.0012 19.1 2.2 1 23 681 703 681 703 0.98 11 12 2e-05 0.0017 18.6 0.6 1 23 709 731 709 731 0.98 12 12 0.038 3.2 8.3 4.2 1 23 737 759 737 760 0.95
Sequence Information
- Coding Sequence
- atggctatcgccgtcggtgaattcgattacttgtgtcgtttgtgcgccgctaagacgggaattctaatgggtttaccgatcttcgaagccggcggcgaacgtttacgaaatatcgacaaaaaaatcgccgtctgcttacctgtccagGTATCAATTGCCGACCAATTGCCGAAAGTAGTGTGCGCGTCCTGTGCTTATAAACTGGATGAAATGTTTGATTTCCGTGAAAAATGTTTGCACACAGAGGGGCTGTTTATGGAAATGTTGAAAGAAATAAAGGGAGAAGACGCTCGTATGAGGAACGGACTGGAAGAAGTTCGAGAAATTCCTGTTATACAAAACAGTATGGAAAGGATTCATGAAAACATGGGAAGCGTCCAAAGGTGCATGGAGCACATGCAAAATGGGGATTGCGTGTCGAACGGAGACCCGAACGAAACGAGCGTTCACACACTCCAAGTTATGGACGAAATGGATCTGGCGGGTGACGAACAAGTCGTTAGCCAAGAGGAAATTGCATCTCAGGAAAATGACATGAAAGTTACAGGAATTCATTGCCTTGACGGTGAAACTGTAAGAATGGTTGACGAGCACATACGGGAGGTCTCGAATCACGAAATTGCTATGCATCTTGAAGGAGACATGACCGTCGTGGGAGATCTTACAGTCGACGGCCACCTTAGTCAGCTTGGAATTAATTATGTGACTACAATAGCCACGCAAAATTCAAGTCAGGAACAAATAGTTCATTATTGCGATAACGTTAAATACGAAACGGTCGATGTTAAGGAGGATTATCAGAGGCTACAAGAGAGATTGACCGTGGAGGTTGCAACGCATCCTATAAAAAATAACGTTGCGACCTCGGGTTTTTCCTCATCGCATACGAAAGCTGGGAGCGAGTTGGAGGAAAGAATAATGACTGAGGGTGAAACGGGTTCAACGCTGGAAGCGTTGGACGGTGAAAATATAGCATCAACGAGTCAGATACCGAGCAGAGATGCGGAGATAATAGTGGAATACACAAAACGAACGAAAGAGACATTATTAGAAAATATACTAAATAATCCAACGTTGGATGAGACGGGATCGAGTTGGTACGTTTGTCCATTTTGTAACGAGGCAGCAACAGAGCCAAATAGTTTAGTGGCACATTTTGAGCAGCATTTTTGTTGCTGTGATTGCGGTTTGTACTTTACGAGTGTCGAGGGTTTGAGTCTCCATGGGGAGCAGTGTGATTTCTACAAAGGAGAAGAATTAGGCGTTAAGGAGGAGGGAGAGGTGGAGGGGGAGGAGGAGGTGAACGAGGGAGAGAAAGAGGAGAGTGAAAAAAATAAAACTGTAAAAACAAGAACAGAAAATTCGTCAGCGATAGAAAACTCTGGAGGGAGGGACGACGACGAAGGAGAAAAGAGGCAATCGAACGTCCGACAAAAATGGACACcaaaagtttgtgctcagtgcggcaagcaatatcgcaccaattataaattacaagaacacatgagaaagcacaccggagaaaaaccttttcaatgtttactttgcgagaaagcatttcgcagtaaaattggtttggctcaacacactgcgacgcacaccggtgaatttgattacaattgttccacttgcggcaaaggttttcaatgcaaaagttatctaattgtacatcaacgagttcattccgatttaaaaccatatccttgcagcacttgtggacaaaattttaaaaccaaacaatcactcctcgaccatcaaaatcgtcacatgggagtcaaaccttacatgtgtgagatttgtggacgtggttttattaccaaaggtttatgcaagagccatcaaaaaatacactcgggcaaagacaatcgtcaatatccctgcgaagtgtgcaacaaaatgttcgtaagcaaaagctatttgaacactcacttgagaattcacaccggtgaaaaaccttatttatgcgaggtctgcggcaaaggatttttaaccagagtcgatcttaaaatacactccacaatgcacaccggtgaaaaaagttttaaatgcgaaatgtgcggcaaagtttttgcaagacgcgccgctttacgctgccatcgacgatcccacaccggtgaacgtccctacagatgcgatgtttgtggcaaaacttttactcaatttagtccaatggccattcacaaacgtcttcacaccggcgaacgaccctacgaatgcgacgtttgcgccaaagcttttgtttcacgatccaccatgatgtgccacagaaaaaaacatCATTTACCCTTAACTACAACTTCCAAAGAATCGTTGACCAACTCCGATTCAATCGACGTCAAAAATATTCATACCACCGATACTGGCCTTAGAGAGGCTCAAGATCCTTTACAAATAAATGCCGATTAA
- Protein Sequence
- MAIAVGEFDYLCRLCAAKTGILMGLPIFEAGGERLRNIDKKIAVCLPVQVSIADQLPKVVCASCAYKLDEMFDFREKCLHTEGLFMEMLKEIKGEDARMRNGLEEVREIPVIQNSMERIHENMGSVQRCMEHMQNGDCVSNGDPNETSVHTLQVMDEMDLAGDEQVVSQEEIASQENDMKVTGIHCLDGETVRMVDEHIREVSNHEIAMHLEGDMTVVGDLTVDGHLSQLGINYVTTIATQNSSQEQIVHYCDNVKYETVDVKEDYQRLQERLTVEVATHPIKNNVATSGFSSSHTKAGSELEERIMTEGETGSTLEALDGENIASTSQIPSRDAEIIVEYTKRTKETLLENILNNPTLDETGSSWYVCPFCNEAATEPNSLVAHFEQHFCCCDCGLYFTSVEGLSLHGEQCDFYKGEELGVKEEGEVEGEEEVNEGEKEESEKNKTVKTRTENSSAIENSGGRDDDEGEKRQSNVRQKWTPKVCAQCGKQYRTNYKLQEHMRKHTGEKPFQCLLCEKAFRSKIGLAQHTATHTGEFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYPCSTCGQNFKTKQSLLDHQNRHMGVKPYMCEICGRGFITKGLCKSHQKIHSGKDNRQYPCEVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCEMCGKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDVCAKAFVSRSTMMCHRKKHHLPLTTTSKESLTNSDSIDVKNIHTTDTGLREAQDPLQINAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00828969;
- 90% Identity
- iTF_00263722;
- 80% Identity
- -