Crap015760.1
Basic Information
- Insect
- Campoletis raptor
- Gene Symbol
- Zfx
- Assembly
- GCA_948107755.1
- Location
- OX403630.1:12099510-12111518[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.3 2e+02 2.7 0.1 1 8 40 47 40 54 0.88 2 15 0.0091 0.78 10.3 4.1 1 23 75 98 75 98 0.96 3 15 0.0081 0.69 10.4 0.4 1 20 104 123 104 125 0.94 4 15 0.53 45 4.7 7.5 1 23 133 157 133 157 0.91 5 15 4.9e-07 4.2e-05 23.7 0.6 1 21 188 208 188 209 0.96 6 15 4.9e-05 0.0042 17.4 1.9 1 23 217 240 217 240 0.92 7 15 1.3e-05 0.0011 19.2 1.2 1 20 267 286 267 288 0.95 8 15 3.7e-06 0.00031 20.9 0.6 1 23 296 319 296 319 0.95 9 15 6.6e-06 0.00056 20.1 1.3 1 21 337 357 337 358 0.96 10 15 0.00043 0.037 14.4 1.0 1 18 366 383 366 383 0.96 11 15 0.00011 0.0094 16.3 0.3 1 21 397 417 397 418 0.96 12 15 0.17 15 6.2 0.5 1 21 445 465 445 466 0.87 13 15 0.00097 0.083 13.3 0.5 1 21 474 494 474 495 0.93 14 15 0.00042 0.036 14.4 0.1 1 21 509 529 509 530 0.95 15 15 2.8e-05 0.0024 18.2 1.0 2 23 539 561 538 561 0.92
Sequence Information
- Coding Sequence
- ATGAATCGTATGACTCGTGATCTTGAACGCTGCATAAAGACTGACAATGGGAGAACTTCCGGATTGAAAATTGAAAACGTCGTGGGAGAAAGTTACGAGCTATTCGAGAAGAAATCACACGCTTGTCCGACATGTGGTAAAAATATCGCCGCCACATCTTCCATGGAATTCCATCGAGCTCACAACTGCTGCAGAACCACTTTAAATGCACAAAATCGAAAATTCGTTTGCAGCATTTGCAATGCACGCTTTTTACGCAAGCATCATCTCGTCAATCACGAAAAATCTTATCACAGCACGACGAAATCGTACACATGTAACACTTGCCACAAAGCTTATGCTTGGCAACCGTCGTTACGTAGACACAAAGTAATGGAGTGTGGAAAAAAACCACAATTTCATTGCGTTTTATGCGCTGTTAGTTTCACGCATAAATGTCATTTCGTTAAACATCTTTCGACGGGTCAACATTTACAAAAATCCTTAAACAATGTTCCAGGAGGATCATTAAGACCATCCCTGAAGATCAACAGGACAAGCCAAAAACTATTTTGGCGTCCATTCCCGTGTGAACGGTGTGGAAAATCGTACACTCGAAAGGACACACTGAGACGTCATCTTCGTGACGAGTGCGGAAAAAAACCGCAATACATTTGCTACCTGTGCACTAAAGGATTCAAGCAAAAGTCCAATTATCAAAGACACAATGCGAAAGTGCATGGCTATCGCATCGTGAACGAAGATTTGTCAATATCATCTCGAAGACACAGCCTTCCCCATGGACATCAAAGTAATCCATTTCCTTGTCAGAGGTGTGGAAGATCGTATCGGAACAAGGGTAGCCTGAAGCGTCATTTGCACGACGAGTGTGGCAAAGCGCCAAAGTATATATGCAGCATATGCGAGAAGGGATTCAAACAGAAGGCAAATTTCCAGCGTCACAATGCAACGATTCACAGTCGGCCACGTTCGACCTTGTGGAATCCTCGCAGCAGCGTAGCTAAACCGTATCCTTGCTACAAATGTACAAGATCGTACACTAACAAGAGCACCTTGAATCGTCATCTACGGGAGGAATGTGGCAAAATGCCACAGTACGTTTGCAGCCTTTGTCAAAAGGCCTTCAAACAACGATCCAACTTTCAACGTAATAAGCGGCGATTGGGTCGCGTGAGCTACAATACACCGTTCAGTTGTTCGAAATGTGGAAAACGGTACACGTGGGCAGATTCATTGACAAGACATCTCCGCGAAGGCTGTGGTGTTCTTCCAAAATTTAGCTGCCGTCTATGTGGTCTAAACATATCCGACTATTACAAACGGCTTGGACGACACTTTTGTTCGACTTGTGGCAAGGAGTACAGGTGGATGCAATCTTTAGTAAGACACGAGCGTGAGGAGTGTGGCAAAGCGCCTCAGCATAGCTGTCCAGTTTGCGGTTTAAGGATACGACACAAATGGATGCTCAAGAAACATTTGATCAGATACGCCCAAGTCGGTTACCACAAACGATATCGTGGCAGATATGCATGTGACGTTTGCGGTAAAGAATTCACTTGGAAGCCATCATTGACGAGACACAAGCGCGAGGCGTGTGGCCAAGAACCTAGATTATCGTGTCCGATATGTTACAAGAAATATCGGCGAAGTGCTCAACTCAAACACCATCTCGATTGGGTACACAAGTGGAACATGAACAAATTATATTAA
- Protein Sequence
- MNRMTRDLERCIKTDNGRTSGLKIENVVGESYELFEKKSHACPTCGKNIAATSSMEFHRAHNCCRTTLNAQNRKFVCSICNARFLRKHHLVNHEKSYHSTTKSYTCNTCHKAYAWQPSLRRHKVMECGKKPQFHCVLCAVSFTHKCHFVKHLSTGQHLQKSLNNVPGGSLRPSLKINRTSQKLFWRPFPCERCGKSYTRKDTLRRHLRDECGKKPQYICYLCTKGFKQKSNYQRHNAKVHGYRIVNEDLSISSRRHSLPHGHQSNPFPCQRCGRSYRNKGSLKRHLHDECGKAPKYICSICEKGFKQKANFQRHNATIHSRPRSTLWNPRSSVAKPYPCYKCTRSYTNKSTLNRHLREECGKMPQYVCSLCQKAFKQRSNFQRNKRRLGRVSYNTPFSCSKCGKRYTWADSLTRHLREGCGVLPKFSCRLCGLNISDYYKRLGRHFCSTCGKEYRWMQSLVRHEREECGKAPQHSCPVCGLRIRHKWMLKKHLIRYAQVGYHKRYRGRYACDVCGKEFTWKPSLTRHKREACGQEPRLSCPICYKKYRRSAQLKHHLDWVHKWNMNKLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -