Basic Information

Insect: Calycopis cecrops
Gene Symbol: ZEB1
Assembly: GCA_001625245.1
Location: LUGF01026920.1:413892-425045[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.14 16 7.3 2.5 1 23 286 308 286 308 0.84

2 10 0.00022 0.026 16.0 4.1 1 23 315 338 315 338 0.95

3 10 0.017 2 10.1 2.0 1 23 369 392 369 392 0.97

4 10 0.0058 0.68 11.6 0.2 2 23 397 419 396 419 0.93

5 10 0.0054 0.63 11.7 0.3 2 20 432 450 432 452 0.94

6 10 1.5 1.7e+02 4.0 0.6 3 23 507 528 505 528 0.94

7 10 0.0079 0.92 11.1 2.5 2 23 544 565 543 565 0.95

8 10 9.2e-07 0.00011 23.5 0.5 1 23 571 593 571 593 0.98

9 10 0.057 6.7 8.4 6.7 1 23 600 623 600 623 0.98

10 10 0.0058 0.68 11.6 0.1 1 13 629 641 629 644 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.14	16	7.3	2.5	1	23	286	308	286	308	0.84
2	10	0.00022	0.026	16.0	4.1	1	23	315	338	315	338	0.95
3	10	0.017	2	10.1	2.0	1	23	369	392	369	392	0.97
4	10	0.0058	0.68	11.6	0.2	2	23	397	419	396	419	0.93
5	10	0.0054	0.63	11.7	0.3	2	20	432	450	432	452	0.94
6	10	1.5	1.7e+02	4.0	0.6	3	23	507	528	505	528	0.94
7	10	0.0079	0.92	11.1	2.5	2	23	544	565	543	565	0.95
8	10	9.2e-07	0.00011	23.5	0.5	1	23	571	593	571	593	0.98
9	10	0.057	6.7	8.4	6.7	1	23	600	623	600	623	0.98
10	10	0.0058	0.68	11.6	0.1	1	13	629	641	629	644	0.91

Sequence Information

Coding Sequence: ATGTTATATAATGGGAATGACGCGAATACTCCTGAAGATTTACAAGCAGTAGCTGATTTTAGAACTTGCAGAGTATGCTTGGGAATGGATAGAAAAATGTACCACATACGAGACTACAACCTCTTCCATCTGTACGAGCTGATAGTGGGAGTGATGgtgGAAACAGTGGACAGATTACCAAAGATGCTGTGCTGGGAGTGCACCAACAAATTGATAAGCATCAAGTCCTTCAAGGAGAGAGCACTACGATCACATGTGCTGTTGTCGAATAGGCTTACCTTGGATAATACATTGACAGTGGctgatattaaatcaataaataggataagttacaatttaaaatcaaatttaacattgaaatttaACGAACCCAATGAGTTTGATTTAGAACTAGACCATGAGAAGATGAATGGCGTACAAACTATTAAAATAGAAGTCAGCAAAATCAACGAGGAGCCCGTCAACAATATTGCCGATGAAGACGGAGTGGACTTGAAACTGGAAGACAGTGAAGTAAAGGACGAAGTGGATCATAGTTTTAGTGATAGTGATGATGTGGAACTTAGTGAGTTGAGGACTAAAAAGGTTAGGAAACGGAAGGCTAAAGTGAAAGTTAAAAAAGAAGTGAGTGAAGTGAAAAGGAGAAAAACTAGAGTGAAAAAAGAAGAAGTgaaggagaaagaagaagaGGAGTCGTTGGATATTATGGACAAGTTCAAGCCGTCGGCGGTGAAGCGCCGCGTGCGCAGCTACGACATAAGCGAGGCGCACTTCGACACGCGGCGGCTGAGCTACGAGGAGCAGATAGCCGAGCTGCAGCGGCGGCAGCAGTCGCCCGCGTACCTCGGCGCGGCCTTCAAGTGCACCGTCTGCTTCAAGGGCTTCAAGTCCAAGGCCACGCACGACCTGCATATAGTGAGGCACAGCGAGAAGTACGGCGCGTTCGAGTGCTTCATTTGCAAGCGGCGCTTCAAGAACTCGCGGCACCTGCGGCTGCACGTGACCAGCCTGCACACCGAGGAGTTCAGCTGCAAGGCCTGCGAGTTCGTCACGCGCTGCAGAGGCATAGCGATCGATCACCAGAAGTGGCACTCGGGCAACACGTACGCGTGCCCGCACTGCCCGTCCAAGTTCGGCAAGTTCACGTCGTACATGTCGCACCTGCGCATCAAGCACTCGTCGCGCTGGGTGTGCGAGCTGTGCGGCTACACGTTCGTGTCCAAGCGCGGCGTCGAGATGCACAAGGCCAAGCGGCACAAGCTGCAGGACGCCAACGTGAAGCTTGAGGGCCCGTACTGCGAGGAGTGCAACATCCGCTTCGTACACAACGACGCCTACCTGCGGCACCTCACGCAGTCTTCCGTGCACAGCAGCGACAACGACCCGAACCGCATCCGCAACGACTGGGGCTGCAAGGAGCAAGTTGGCGTAGTGAGGCGCGTGCGCAAGAAACGCGCCCCCGGCGTCATCGTGCACTGGGGCGCGGACCACCCCGACCGGCCCAAGCAGCTCATAAACTGCGAACAGTGCGGCGCGCAGCTGGACAGCTACCGCATGTACTCGCACCACTTCCGCGTGGCGCACCCCGGCCTCAACCGGACCAAGTTCTCGCGCGTCGCCGGCAACTGCATGTGCGAGCAGTGCGGCAAGATGTTCGCGTGCAAGGCGCTACTAGTGGACCACATGACGTCACACACGGGCGAGAAGCGCTTCAAGTGCGGCGCGTGCGACAAGGCGTTCACCAACAAGAACAACCTCAGCGTGCACCAGCGCGTGCACGGCGCGGAGGTGCCCACCTACCAGTGCCCCTACTGCGAGAAGCAGTTCCACTTCTACCAGAACTGCAACAGACACGTCAAGACGGTGCACAAGGGCGTGAAGCAGTTCCAGTGCGAGATCTGCGGCAAGGAGTTCACGTCGGCGGCGGGGCAGCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCCTACCGGGAGTGAGGCCCCGCCTACCGCGAGGGAGTGCCTCGCATCCATTATGA
Protein Sequence: MLYNGNDANTPEDLQAVADFRTCRVCLGMDRKMYHIRDYNLFHLYELIVGVMVETVDRLPKMLCWECTNKLISIKSFKERALRSHVLLSNRLTLDNTLTVADIKSINRISYNLKSNLTLKFNEPNEFDLELDHEKMNGVQTIKIEVSKINEEPVNNIADEDGVDLKLEDSEVKDEVDHSFSDSDDVELSELRTKKVRKRKAKVKVKKEVSEVKRRKTRVKKEEVKEKEEEESLDIMDKFKPSAVKRRVRSYDISEAHFDTRRLSYEEQIAELQRRQQSPAYLGAAFKCTVCFKGFKSKATHDLHIVRHSEKYGAFECFICKRRFKNSRHLRLHVTSLHTEEFSCKACEFVTRCRGIAIDHQKWHSGNTYACPHCPSKFGKFTSYMSHLRIKHSSRWVCELCGYTFVSKRGVEMHKAKRHKLQDANVKLEGPYCEECNIRFVHNDAYLRHLTQSSVHSSDNDPNRIRNDWGCKEQVGVVRRVRKKRAPGVIVHWGADHPDRPKQLINCEQCGAQLDSYRMYSHHFRVAHPGLNRTKFSRVAGNCMCEQCGKMFACKALLVDHMTSHTGEKRFKCGACDKAFTNKNNLSVHQRVHGAEVPTYQCPYCEKQFHFYQNCNRHVKTVHKGVKQFQCEICGKEFTSAAGQRXXXXXXXXXXXXXPRLPGVRPRLPRGSASHPL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00688111;
90% Identity: iTF_00688111;
80% Identity: -