Basic Information

Insect: Calycopis cecrops
Gene Symbol: -
Assembly: GCA_001625245.1
Location: LUGF01014571.1:22873-30993[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0065 0.76 11.4 4.1 1 23 421 444 421 444 0.96

2 7 5.1e-05 0.0059 18.1 0.1 3 23 463 483 461 483 0.95

3 7 0.014 1.6 10.4 0.8 1 23 489 511 489 511 0.97

4 7 1.9e-06 0.00022 22.5 1.2 2 23 525 546 525 546 0.98

5 7 3.5e-07 4e-05 24.9 0.5 2 23 553 574 552 574 0.97

6 7 5.2e-06 0.0006 21.2 1.1 1 23 580 602 580 602 0.98

7 7 2.8e-05 0.0032 18.9 0.8 1 21 608 628 608 629 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0065	0.76	11.4	4.1	1	23	421	444	421	444	0.96
2	7	5.1e-05	0.0059	18.1	0.1	3	23	463	483	461	483	0.95
3	7	0.014	1.6	10.4	0.8	1	23	489	511	489	511	0.97
4	7	1.9e-06	0.00022	22.5	1.2	2	23	525	546	525	546	0.98
5	7	3.5e-07	4e-05	24.9	0.5	2	23	553	574	552	574	0.97
6	7	5.2e-06	0.0006	21.2	1.1	1	23	580	602	580	602	0.98
7	7	2.8e-05	0.0032	18.9	0.8	1	21	608	628	608	629	0.95

Sequence Information

Coding Sequence: ATGGATGGCTTTTGCCGAGCCTGCTTGGCTCAGGTCGACGATTATTCAAGTTTATATCCATACAGTGAAAAGAATAGGAGACTGTTCGTATATTCTACAGGACTACAGGTAAAaagaaatgataatataatatttcaaatatgtaaAGACTGCTACATTGGTATGAAAAATGCATGTACTTTTAAGAAGAACAGTAGAAATTGTGATAGAAAATTAAAGAGCTATTTTGCACTGAAAGAAGATGGTGACTCTACAGACCTgagttcttatttaaaaaacaatgatgatagtttaaaatttagacttCCAGTGAATATTGGTAGCAGCACTCCTGCAAATCAAAGAAGAGATGATGACAATGAGTCCACTTGCACaagcatacaaaatttcatgacagaCCTCTTGCCTCCTGAGGACATACCCGACAATGAGGCAAAGATAATTAGGGAGGTTATTGAAGAGGAGGCAGATATTTTAGAGGATTCCCTGGACTCACACTGGCTCCTTGATGACTCCTCTGTGGACACTGATTTTCGTTTAGATTTTAGTTTCAGCCCCTTTGCCACGCCTCGTCTGACAAATGAAGATCACTGTCACACACCAATAAAGAAACAACACACACCAACGACACAGACTAAATATGAATCTCATAAAAAGGTCGAAAAATTCCTAGACAACCATGATAGTGTCAAAGATGTGTCATTGCAAAAGTTACTGGAAAACATTGATAGCCCTTTGAAAGGGATTGATGCATTTGGCATGGAGCAGACATGCACTATAGATTTCAACCTAGATACTGGTGCAAAGAAAAACCAGACATGTGTTATAGATTTAAACACAGATGCTGGTCTAAAGATAAACCAGACATGCGCTATAGACTTGAACCTAGGTACTGATCTTGAGAAAGGCCAGATTTGCTCTATAGATTTGAATTTAGATAAAGCTTTGAAGAAGGATGCTGAATATGTTTACTTGGATCGAATTTTGACACCTACagtgagaGATGATATATCCGGGCCACCAACTCCGCTCATTGCAAACATTCTCTTCGGTGACAATGATGAAGATATGGATGATAAGGAAAACggaaaaaatatggaaaatgaaattaatgttgttgaggaatttttaaacataaacgaAAGTGTCTATAAAACAGAAAATACAGAATTACAGACAGAGGGAAGAAAAGAAGTGAAAGAAATAACTGCAAAAGAGATAGAAGAGACCTCACAAGAGAATAAGTTTTGTATAACCAACTTCTACTGCAAAATGTGTAATAAGCAATTTGGGCATTTGAAAGGTCTTAAGATTCACAGCAACAAATATcacaaaatgaaaatagatATCAAGCCGAAGAAGAAAAATGTCCCAAGGAAAATGATTTGCGATATGTGTGGGAAGATATTTCAATCTCCCAGATCTCTTATAAGACATTTAGAAAATCATaatAAGCCGAATTCGTTCAGCTGCAGGTACTGCCCGCTCAAGTTTAGCAACCAGGTGCGCGCAAACATGCACGTAAGCACGCATACTGGCGTGCACGTGGACAGTACAAAGAAAATGAAACGCACATGTACTGTTTGCGGCAAATCGTTCTCGTCCGTGTCTAACTATCGCATGCACGTGCGACGACACGACAAGTCGTATCAGCTCGAGTGTGAAGAGTGCGGCATGAGCTTCTACAGGACGTCAGACCTCAACTCGCATATGAGACGCCACACGGGGGTGCGGCCGTTCTCCTGCACGCTCTGCCTCAAGAGCTTCGCCCGCTCCGATGTCCTCAACAGGCACATGAAAATGCACACAGGCGAACGACCGTTTTCCTGCAACTATTGTAACAGGCAGTTCACAAGTGCTTCCGAGTTGAGGGGGCATCAGAAAAACACCCAAAGGTGTATCAAACTGCAGAATAGTGCAGCCAACAACAGCGATCACGATGTCGGGAAGTATTTGGTGATTGGGGTCTAG
Protein Sequence: MDGFCRACLAQVDDYSSLYPYSEKNRRLFVYSTGLQVKRNDNIIFQICKDCYIGMKNACTFKKNSRNCDRKLKSYFALKEDGDSTDLSSYLKNNDDSLKFRLPVNIGSSTPANQRRDDDNESTCTSIQNFMTDLLPPEDIPDNEAKIIREVIEEEADILEDSLDSHWLLDDSSVDTDFRLDFSFSPFATPRLTNEDHCHTPIKKQHTPTTQTKYESHKKVEKFLDNHDSVKDVSLQKLLENIDSPLKGIDAFGMEQTCTIDFNLDTGAKKNQTCVIDLNTDAGLKINQTCAIDLNLGTDLEKGQICSIDLNLDKALKKDAEYVYLDRILTPTVRDDISGPPTPLIANILFGDNDEDMDDKENGKNMENEINVVEEFLNINESVYKTENTELQTEGRKEVKEITAKEIEETSQENKFCITNFYCKMCNKQFGHLKGLKIHSNKYHKMKIDIKPKKKNVPRKMICDMCGKIFQSPRSLIRHLENHNKPNSFSCRYCPLKFSNQVRANMHVSTHTGVHVDSTKKMKRTCTVCGKSFSSVSNYRMHVRRHDKSYQLECEECGMSFYRTSDLNSHMRRHTGVRPFSCTLCLKSFARSDVLNRHMKMHTGERPFSCNYCNRQFTSASELRGHQKNTQRCIKLQNSAANNSDHDVGKYLVIGV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -