Ccec020339.1
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- -
- Assembly
- GCA_001625245.1
- Location
- LUGF01039636.1:13904-25552[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.036 4.1 9.1 0.2 1 23 192 215 192 215 0.96 2 11 2.4e-05 0.0028 19.1 3.4 1 23 222 244 222 244 0.99 3 11 0.039 4.6 9.0 0.8 1 23 248 271 248 271 0.96 4 11 0.0036 0.42 12.2 1.2 1 23 308 330 308 330 0.98 5 11 0.0012 0.14 13.7 1.6 3 22 342 361 341 365 0.90 6 11 0.0059 0.69 11.5 0.4 1 23 403 425 403 425 0.98 7 11 0.081 9.5 8.0 0.3 3 21 435 453 433 458 0.87 8 11 1.1e-05 0.0013 20.1 0.4 1 23 466 489 466 489 0.93 9 11 0.00038 0.044 15.3 3.1 1 23 495 518 495 518 0.96 10 11 3.8e-05 0.0044 18.4 1.7 3 23 527 548 525 548 0.94 11 11 0.0062 0.72 11.5 1.6 1 23 554 577 554 577 0.98
Sequence Information
- Coding Sequence
- atgagttGTTGCGGATGTTTGAACTCAAATCGAAAAATGTTACGTATTAAAACTGAGAAAGAAAGAGTGTGCTTTTTACAAATCATTGAAGAAATTCCTatgCCGTTACCAGAAGATATGTCTCTTTATCTTTGTTGGGAATGTACCGCTTCACTGGTTCGATTCTCAAAATTTAAAGATCAAGTAatacaatcatataaaatattaaacgataTAAAACCTgGATGTCCCAATAGCATATATAAACCACAATCAAGTCTGAAAACACAAGGTATATTTAATCTTAGTTATAAACCTGTGGAAGCCACGGATTATTCAGTTCAAGTTATAAAAGTAGAGAAGCAAGAAGAAGACTTTGACTTGGATATAAAACAAGAGAATGACTATTATTCTAATGACGATGAACAACCACTTATTGAAATatctaaaaagagaaaaaaaaagaaagtgatAAATGGTCatacagatattaaaaataaggacttggaatatatagaaatagattTAAGTGCAGATGAATTATTAGAAGAGAGGAGAAATTTAGTGGATAAAGAAGATTATATTAATGCTATGTTTAGATGTGAAAGATGTATATCCTCTTTCCCAAATGCAGATGATTTGAGTGATCACATAAAGTTAAAACATGAAAagAATGCGTCATTCTTTAAATGCAAGATATGCGAATGTTCATTCAGTTCTGAGGTGTCGTTAAATTATCACATGAACAGACACCTAAAGAGGTACCAGTGTGTGGTGTGTAATGACAGGTTCACAAGCAAGAGATCAGCAGCTAAACACTATGACATGACACACTGCTTGGGAACAGACATAGACTATGATTTTGAAAATACACAAAACGATCCACCTGAAGTTGCAATAGAAGATTCAGAAGGCCATGGTAACAGCAAGTCGTCGACCAGTTTTCCATGCGAGTTCTGCTCTAAGACATTCATGTGGAGAACTTCGCTGAGGAAGCACGTGGAGACACACCGCATAGAGAACGGCCAGAAGCGGCGCCCCTACTGCGAGCCGTGCAAGACATCCTTCACAACGACGTCTAATCTACAGAAACATGTGAAGACGAGTTCCAAACACCAGGTGCAGTTGAAGCTatgGAAGCTGAAGACGACGCTGCCTGGAGACGGCGGGTCGGAGAAGGCGGCGCTGGAGCAGATCCGCAGCGACGTGGCGAGCGCACGCCACCAGTACCCATGCAACCAGTGCGGCCGCCTCTTCCTGTGGCGCGGCAACCTGCTGCGGCACATGAAGAGCCACGCCGCCAAGGCCAAGGGCGAGCTGGTGTGCGTGCCGTGCAACCGTAGCTTCTCCTCCATCGCCACGTACCGCCAGCACATGACCATCAGCAAGAAACACGTCTCCGAGGAGGACTTCAAGTTCATGTGCAGCGACTGCGGCAAGCGGTTCGCCAACAAGACGCGCCTCAGGGACCACATAGACTGGGAGCACCTCAAGAACTACGTGCACACTTGCCGCGACTGCCAGAAgGTGTTCAAGAGCTACACGTCCCTGTACCTGCACCGGCAAGTGGTACACAAGAGGGACCACGTGGAGCACCTGTGCGACCACTGCGGGAAGGCCTACCCGAATAAGGCAAAGCTTCGCAACCACATAACTTCGGCCCACTGTGGCACGGCGGCGTACAGCTGCGGCGTGTGCGGCGCGCGCTTCGCCTGGCACTCGTGTCTGTCGCGCCACGTGCGGCGAGTGCACCGCAAGCCGCCGCCCTCCGCACCGCAGCCACAATGA
- Protein Sequence
- MSCCGCLNSNRKMLRIKTEKERVCFLQIIEEIPMPLPEDMSLYLCWECTASLVRFSKFKDQVIQSYKILNDIKPGCPNSIYKPQSSLKTQGIFNLSYKPVEATDYSVQVIKVEKQEEDFDLDIKQENDYYSNDDEQPLIEISKKRKKKKVINGHTDIKNKDLEYIEIDLSADELLEERRNLVDKEDYINAMFRCERCISSFPNADDLSDHIKLKHEKNASFFKCKICECSFSSEVSLNYHMNRHLKRYQCVVCNDRFTSKRSAAKHYDMTHCLGTDIDYDFENTQNDPPEVAIEDSEGHGNSKSSTSFPCEFCSKTFMWRTSLRKHVETHRIENGQKRRPYCEPCKTSFTTTSNLQKHVKTSSKHQVQLKLWKLKTTLPGDGGSEKAALEQIRSDVASARHQYPCNQCGRLFLWRGNLLRHMKSHAAKAKGELVCVPCNRSFSSIATYRQHMTISKKHVSEEDFKFMCSDCGKRFANKTRLRDHIDWEHLKNYVHTCRDCQKVFKSYTSLYLHRQVVHKRDHVEHLCDHCGKAYPNKAKLRNHITSAHCGTAAYSCGVCGARFAWHSCLSRHVRRVHRKPPPSAPQPQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -