Basic Information

Insect: Calycopis cecrops
Gene Symbol: -
Assembly: GCA_001625245.1
Location: LUGF01002310.1:28547-39420[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.6 4.2e+02 2.8 0.3 1 23 87 110 87 110 0.92

2 18 4.3 5e+02 2.5 0.0 3 23 115 135 113 135 0.94

3 18 0.044 5.1 8.8 0.0 2 23 139 161 138 161 0.95

4 18 1.4 1.6e+02 4.1 0.7 3 23 389 410 387 410 0.95

5 18 0.0006 0.07 14.7 0.2 1 20 418 437 418 439 0.95

6 18 0.074 8.7 8.1 0.5 2 23 449 470 448 470 0.92

7 18 0.75 87 4.9 0.2 1 23 486 509 486 509 0.86

8 18 0.1 12 7.6 0.8 1 23 518 541 518 541 0.94

9 18 0.93 1.1e+02 4.6 0.2 2 23 620 642 619 642 0.83

10 18 7.1e-05 0.0083 17.6 1.1 1 23 676 698 676 698 0.97

11 18 1.3e-06 0.00016 23.0 0.6 1 23 705 727 705 727 0.98

12 18 8.6e-05 0.01 17.3 2.3 1 23 732 754 732 754 0.96

13 18 9e-05 0.01 17.3 0.3 1 23 760 782 760 782 0.98

14 18 3.9e-05 0.0045 18.4 1.2 1 23 788 810 788 810 0.93

15 18 0.00045 0.052 15.1 3.3 2 23 817 838 817 838 0.97

16 18 0.00036 0.042 15.4 0.8 2 23 846 868 845 868 0.97

17 18 0.00029 0.034 15.7 4.1 1 23 873 895 873 895 0.98

18 18 0.35 40 6.0 3.4 1 23 901 924 901 924 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.6	4.2e+02	2.8	0.3	1	23	87	110	87	110	0.92
2	18	4.3	5e+02	2.5	0.0	3	23	115	135	113	135	0.94
3	18	0.044	5.1	8.8	0.0	2	23	139	161	138	161	0.95
4	18	1.4	1.6e+02	4.1	0.7	3	23	389	410	387	410	0.95
5	18	0.0006	0.07	14.7	0.2	1	20	418	437	418	439	0.95
6	18	0.074	8.7	8.1	0.5	2	23	449	470	448	470	0.92
7	18	0.75	87	4.9	0.2	1	23	486	509	486	509	0.86
8	18	0.1	12	7.6	0.8	1	23	518	541	518	541	0.94
9	18	0.93	1.1e+02	4.6	0.2	2	23	620	642	619	642	0.83
10	18	7.1e-05	0.0083	17.6	1.1	1	23	676	698	676	698	0.97
11	18	1.3e-06	0.00016	23.0	0.6	1	23	705	727	705	727	0.98
12	18	8.6e-05	0.01	17.3	2.3	1	23	732	754	732	754	0.96
13	18	9e-05	0.01	17.3	0.3	1	23	760	782	760	782	0.98
14	18	3.9e-05	0.0045	18.4	1.2	1	23	788	810	788	810	0.93
15	18	0.00045	0.052	15.1	3.3	2	23	817	838	817	838	0.97
16	18	0.00036	0.042	15.4	0.8	2	23	846	868	845	868	0.97
17	18	0.00029	0.034	15.7	4.1	1	23	873	895	873	895	0.98
18	18	0.35	40	6.0	3.4	1	23	901	924	901	924	0.97

Sequence Information

Coding Sequence: atgtcctcTGATGAATCCGACGATGAACCGCTATCTGTTTTGGCCGCAGCTAAAAAGGCGAACCCTCAGGAGGATGAGAGTAGCGACAAAAGTGAAGAATATGAGCccacaaagaagaaaaagagggcagttgtaataaaaaagtcgaGTCTGACattgaaaattagtaaaaagCTGAAAGCAATATTGTCACCTCCTGTAACACAGCGCCCAACCGATGTCTGGCTATACCTGAAGGATTTGAATCCAAGTGGGCCCTATACGTGCTTACTATGCTCAGCATGGTTTATAAATAAGTCAAAAATGATAATGCATTATGCTTTAAAtcacaaaaaagatttttgtgGTATTTGCAGATACTTTGTGCCAGATAGAGAAGCGTGGTGGGCTCATGAAAAGTTCCACACACCCTGGCCATGTTCACAATGTATTGAAGCATTTGCTACTGAAGCACTTCTTAGATCACATCTTAGAAATGTCCACAACTTAGTCCATTGTCGGCTTTGCCACTTCCGAGTGCCAGCAGACGAGCAATACGATGCACACTTATTTCAGAAGCATAATGTCACAAATCCTTCTATAAAAGATGAAGAAAACCTATGGGAGGTTGATTATGACGGATCCCAAAAATTTATATGTCTATTGTGCACCAAAGTGGACAACTCActgtcaatgttttttaatcatTATATGGGATACCATCATTTCACACTAAAATGCTTGACAAGTCTTGTAGCCGGCAGGGATCCACCATTTTTAGTTGATGGAGCAGATGTTAGTTCTAAATTTATAGAGGATCAATTGAAAGGACATGCAAGACTTGGTTATGTAGATTTGGAACCTAGGGCTCTTCAAATTACAGATGAAAATACAGATACTCAAATGTTTGGAGATTCATGTCCACCTCCCATTAAACAGGAGACACTTAGTGACTCGGAAGATGTTAAAATGGAAAGtgaagaaacaaaaattaacaCAAGTATTCATATTGACTACAAGGGAATTCAAGATTTTGATGTTACTCTTACAGAAGTGATAGTTTTAGAAAATAGCTATTTTGAATATTTGGAGAGCACACAAAAAGCACTTAATTGTAATACAGTACCTGAAAACTCagatataaactataaacaaatgAAACCGGAATTACTCATTCGTCTATTTTGTTCTTTATGTAATTCTCGATTCCAAACTGTACAGGCATTTTCAGTGCACATCTCAAAAATGCATAACATCAGAGTTGTTCCTCTGTATTCATGTAGGGTTTGTGCTACGACATTTGACACCCAAAGTGAACTGAAAACGCATATTTCGGAGGAGTTGGGTGACTTTGAAGATTTATGGATTTGTCAATTTTGTGACAAGGAGTTTGACAATCGGGAAGCTTCTAGAAAACATCTTACGGAGCACTGGGATTCTTTAGAGTTCGACAATTGTTTTAGTCCACATTTGGGATTTAAATGCAAATACTGTCCAACATTGTTTTGGAATGAGCCAGAGCGTGAAGCTCATCAAATTAGGGCACATATGAATAAGTATAAAGATGACTTTTATAAGTGTGAACCATGTTCACTCACATTCAGTGACAAGGTATGGTTTATGTATCATTATCTAGAGAAACATAATGTTCAAGATGTAAAGAACTCCTATCTCCTAAAATGCTGCGTCTGCTGCATAGTCCTGCCGGGGCTAGAAGACATGAGGTTGCACTTTGAGCAGATCCACCCTGAAGCGAAGAAACTCTACTGCTCATTGGATCCCTGTAAATTCAAACCACTTGGTCACAGGAAATCATTTAAACTGCATgtaaagAGCATCCACGGTACGGTGCGAGCGCCGCGCGTGGAGCGGTCGGTTACGTGCGCGATGTGCGGGCGGGACTTCGCGAGCGCGCGCGCGTGCGCCGCCCACACGTCGCAGGTGCACGGGCCCGGCAAGTTCAAGTGCAAGCTGTGTCGCGACGTGCTGCATACCATGGACGAGAGGAAGCTCCACTACTTGCTGTGTCACCCGGGGCGGCACCCGTTCGAGTGTGCGGAGTGCGGCAAGTCGTTCCAGTACAAGTCCTCTCTGTATATGCACAAGCAAGAGCACGCGCCCAACCGTCAGAACTACACCTGCGACTACTGCGGGAAGGTGTTCGCTAAAAAAGATTCGTTCCGCGAGCACGTGCAAATCCACGAGGGGCCCCGGCACGCGTGCTCGTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGCCGTCACACCGGCGAGCGGCCCTACGCGTGCCCCGAGTGCCCGCGCACCTTCGCGGACAAGGGCGCATGTACTGCGCACACGAGAACGCACTCGAAGGCGACCTCGTTCGCGTGCATCTACTGCGGTCAGACGTTCGTGCAGAAGTCGAAGCTCACCTACCACATCAGGAAACATACAGGCGAGAACCTGGAGTCGTGTACGGTGTGCTCCAAGCTGTTCACGAGCGCGTGTTCCCTGCGCGAGCACATGAAGACGCACGTCGAGAAGAAACAGATTGTCAAGTGTCCGCTGTGTGACAAGAAATACCAAGACGAGCGCTACATGCTGCGTCACTTACGCACGTCGCACACGCGCTCCACGTACACGTGTCCGCTGTGCCACAAGTGCGTCACTAGCGCCACGGGCCTGCGCCACCACGTCATCACGCACAGCGACCTCAACACCTTCCGCTGTAAATGCTGTCCCAAAGCGTACGCCGTCAAGAAAACGATCATTAAACATCTAAAAAAGAGACATAACTTGGACGGCTCAGAGATAAACATAAAGGACTACTTCACCCGACTAGACCCCAGGGACTGCAAACTTGGGCTCGACGAAGAGACCATGAACATGATATTCGGACCCAGGAAATTCGTGAGTGACGTCATGATCGGCGACTATGTGACGTTAGCGAAGAGTATAAaagtgaagaagaagaagaaagagaaagaaatagaaaaacagGCGAAGGAAAGTGACAGCACTAATGATGAGATAGCTACGGTCAATATCAAGCAGGAAGTACACAGTGAGGAGGAATTGGAACCGACGGACTTTGTCAGTGTTAAGATTGAATCTGTGGAGAATGAGGAAGGCTGTCACCTCGATGAGTAG
Protein Sequence: MSSDESDDEPLSVLAAAKKANPQEDESSDKSEEYEPTKKKKRAVVIKKSSLTLKISKKLKAILSPPVTQRPTDVWLYLKDLNPSGPYTCLLCSAWFINKSKMIMHYALNHKKDFCGICRYFVPDREAWWAHEKFHTPWPCSQCIEAFATEALLRSHLRNVHNLVHCRLCHFRVPADEQYDAHLFQKHNVTNPSIKDEENLWEVDYDGSQKFICLLCTKVDNSLSMFFNHYMGYHHFTLKCLTSLVAGRDPPFLVDGADVSSKFIEDQLKGHARLGYVDLEPRALQITDENTDTQMFGDSCPPPIKQETLSDSEDVKMESEETKINTSIHIDYKGIQDFDVTLTEVIVLENSYFEYLESTQKALNCNTVPENSDINYKQMKPELLIRLFCSLCNSRFQTVQAFSVHISKMHNIRVVPLYSCRVCATTFDTQSELKTHISEELGDFEDLWICQFCDKEFDNREASRKHLTEHWDSLEFDNCFSPHLGFKCKYCPTLFWNEPEREAHQIRAHMNKYKDDFYKCEPCSLTFSDKVWFMYHYLEKHNVQDVKNSYLLKCCVCCIVLPGLEDMRLHFEQIHPEAKKLYCSLDPCKFKPLGHRKSFKLHVKSIHGTVRAPRVERSVTCAMCGRDFASARACAAHTSQVHGPGKFKCKLCRDVLHTMDERKLHYLLCHPGRHPFECAECGKSFQYKSSLYMHKQEHAPNRQNYTCDYCGKVFAKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPECPRTFADKGACTAHTRTHSKATSFACIYCGQTFVQKSKLTYHIRKHTGENLESCTVCSKLFTSACSLREHMKTHVEKKQIVKCPLCDKKYQDERYMLRHLRTSHTRSTYTCPLCHKCVTSATGLRHHVITHSDLNTFRCKCCPKAYAVKKTIIKHLKKRHNLDGSEINIKDYFTRLDPRDCKLGLDEETMNMIFGPRKFVSDVMIGDYVTLAKSIKVKKKKKEKEIEKQAKESDSTNDEIATVNIKQEVHSEEELEPTDFVSVKIESVENEEGCHLDE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00787062;
90% Identity: iTF_00688060;
80% Identity: -