Basic Information

Insect: Calycopis cecrops
Gene Symbol: prg
Assembly: GCA_001625245.1
Location: LUGF01012854.1:25263-27055[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.23 26 6.6 2.1 1 23 178 201 178 201 0.86

2 10 0.0074 0.86 11.2 1.3 1 19 207 225 207 230 0.89

3 10 2.6e-06 0.0003 22.1 1.4 1 23 236 258 236 258 0.96

4 10 3.8e-07 4.4e-05 24.7 4.9 1 23 264 286 264 286 0.99

5 10 1.7e-05 0.002 19.5 0.1 1 23 292 314 292 314 0.97

6 10 0.00056 0.065 14.8 0.8 1 23 320 342 320 342 0.95

7 10 6.5e-05 0.0076 17.7 1.0 2 23 431 453 430 453 0.95

8 10 5.7e-05 0.0067 17.9 1.0 1 23 459 481 459 481 0.93

9 10 4.4e-05 0.0052 18.2 1.1 1 20 487 506 487 508 0.94

10 10 0.0014 0.17 13.5 0.0 3 23 518 538 516 538 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.23	26	6.6	2.1	1	23	178	201	178	201	0.86
2	10	0.0074	0.86	11.2	1.3	1	19	207	225	207	230	0.89
3	10	2.6e-06	0.0003	22.1	1.4	1	23	236	258	236	258	0.96
4	10	3.8e-07	4.4e-05	24.7	4.9	1	23	264	286	264	286	0.99
5	10	1.7e-05	0.002	19.5	0.1	1	23	292	314	292	314	0.97
6	10	0.00056	0.065	14.8	0.8	1	23	320	342	320	342	0.95
7	10	6.5e-05	0.0076	17.7	1.0	2	23	431	453	430	453	0.95
8	10	5.7e-05	0.0067	17.9	1.0	1	23	459	481	459	481	0.93
9	10	4.4e-05	0.0052	18.2	1.1	1	20	487	506	487	508	0.94
10	10	0.0014	0.17	13.5	0.0	3	23	518	538	516	538	0.92

Sequence Information

Coding Sequence: ATGGATGATTCCTATATTATCTCGAATTTTCATACACTTTGTCGTCTGTGTCTTAATAAGAGTAATTTAACAGTATCAATTTTTAGTAGTACTCCCGATGATTCATCAACTATAACTGTAACCTCTAAAATTACAGAGTGTTTCGAAATTCAGATAAATCCAAATGACGGTCTACCTACAAgaatttgttataaatgtttatttaaagtagAAAAGTGTTCCAAGTTTAGACAGCAATGTATACAAAGTGACTCCAGATTAAAACAAATAACCAATAAAGTGAAATATGAATTGGATACTCAAAATTCTTTAGAATGTAACTACAACTACAGTAATATTCAAGAGGTACATAAAATTAAGTCtgaagattttattgttgaagaCAGTGTTGTAATGGTTGTGGACCCTAGTCTAGATTATGATTCCTCAGAAGAGTCTGAGAATGTTGATCAACCAGAAATAGAAACATCAGAACAAGATAATGTTGTGGACAGTGACTTACCTACAGCTGAATCATTTTTTAAGAATGTTTTTATGTGCCAGTATTGTGATCAAGCCTTTATTTCTTTGGAGAAATGTAAGGATCATGAACTTAGCTTTCATGACCCCACTTTGCCATACAAATGCATGGAATGTGGTTTAGTGTTTGCTGAACGTAGTCAATATGTAACACATTGTAAGCAAATACATGGTAGTGATAAGCCTTATCATTGTCCAGAGTGTGAAAAGTCCTTTGGGAGGAGATCAGATTTACGTAAACATTCAATTGTGCATACTGGAATAAGGCCATATCAATGTCATTACTGTTTAAAAAGCTTCTCTAGAAACACAAATTTAAGTAAACATTTGAGGATACATTCTGGTCACAAACCACATGTTTGCCCATTATGCCCTCGTAGTTTTGTAGCAAAAGGAGATTTACAACGTCATGTATTAGTTCATTCTGGGATGAAACCGTTTGCCTGTAAAAAGTGTCCATTAACATTTGGTCGAAGGGATAAACTACTTAAGCATGAAGTCAAACATGGCCCCATCTCTCATATAGGATATGGAAATAATCAAATAACCCATGATATGGTTGTTAATGTAAACCCTTTTAGTAATCTTATATCAAGTACAAACCAAGATAATGTTGATTACGAATTGCCTAGAGTACCTGATCATATCGCTGGGGAGAgtagttttataaatgaaattcatAAAAACCCATCCACTTCTGGAAAACAAGTACTTAATTCACCCCCAAAGCAGAAGTCTCCTATTAGTAATAAGaataaaccaaaaaatataaaatgccaCCAGTGCCCTAAAAGATTCTCATCACTGGATGCATACAAAACTCATGTTTCTGTTGCACATATTGGATCAAGAGTATTCCAatgcaaaatatgttttaaaaaattcccAAGGAAGAGAGAACTAGATCGCCATGTTGTTGCACATTCTGGCATGAAACCGTTCAGCTGTAATCAATGTGATaaaacttttactaaaaaaGATAAACTTGATAAGCATGTAGAGTCTAATGAATGTTTGGTTGTGAATATGCCTTGCATTGAATGTGGTGCGACCTTTGAAAAGAAAGCTGATTTAGTAGCCCACATAAAATCCCACTTTACAGACAATTTGGAGGATAAGATTACAGAAAGTGAGATCAAACAGGAACATGACATAGACTTTGAAATGAatgataatttttatgatttagaaAGTTAA
Protein Sequence: MDDSYIISNFHTLCRLCLNKSNLTVSIFSSTPDDSSTITVTSKITECFEIQINPNDGLPTRICYKCLFKVEKCSKFRQQCIQSDSRLKQITNKVKYELDTQNSLECNYNYSNIQEVHKIKSEDFIVEDSVVMVVDPSLDYDSSEESENVDQPEIETSEQDNVVDSDLPTAESFFKNVFMCQYCDQAFISLEKCKDHELSFHDPTLPYKCMECGLVFAERSQYVTHCKQIHGSDKPYHCPECEKSFGRRSDLRKHSIVHTGIRPYQCHYCLKSFSRNTNLSKHLRIHSGHKPHVCPLCPRSFVAKGDLQRHVLVHSGMKPFACKKCPLTFGRRDKLLKHEVKHGPISHIGYGNNQITHDMVVNVNPFSNLISSTNQDNVDYELPRVPDHIAGESSFINEIHKNPSTSGKQVLNSPPKQKSPISNKNKPKNIKCHQCPKRFSSLDAYKTHVSVAHIGSRVFQCKICFKKFPRKRELDRHVVAHSGMKPFSCNQCDKTFTKKDKLDKHVESNECLVVNMPCIECGATFEKKADLVAHIKSHFTDNLEDKITESEIKQEHDIDFEMNDNFYDLES*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00406109;
90% Identity: iTF_00688038;
80% Identity: -