Ccec005794.1
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- -
- Assembly
- GCA_001625245.1
- Location
- LUGF01010693.1:38112-43412[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0003 0.035 15.6 2.9 1 23 152 175 152 175 0.98 2 17 2e-05 0.0023 19.3 1.3 1 23 184 207 184 207 0.96 3 17 0.043 5 8.8 0.4 3 23 221 242 220 242 0.97 4 17 0.012 1.4 10.5 3.2 1 23 251 274 251 274 0.95 5 17 1.6e-05 0.0018 19.7 2.0 1 23 286 309 286 309 0.97 6 17 4.5e-05 0.0053 18.2 0.8 2 23 337 359 336 359 0.97 7 17 9.7e-05 0.011 17.2 1.3 2 23 369 391 368 391 0.97 8 17 0.23 26 6.6 1.0 3 19 397 413 396 415 0.94 9 17 0.0029 0.33 12.5 0.4 2 21 421 440 421 443 0.94 10 17 0.0023 0.26 12.9 0.9 1 23 451 474 451 474 0.95 11 17 0.00012 0.014 16.9 3.1 1 23 479 502 479 502 0.94 12 17 3.4e-05 0.0039 18.6 1.2 1 23 513 536 513 536 0.97 13 17 0.00015 0.017 16.6 0.3 1 23 561 584 561 584 0.91 14 17 0.017 1.9 10.1 0.9 2 23 617 638 616 638 0.97 15 17 4.4 5.1e+02 2.5 0.9 1 23 675 697 675 697 0.85 16 17 0.014 1.7 10.3 0.1 1 23 704 726 704 726 0.97 17 17 0.24 28 6.5 1.9 1 23 732 755 732 755 0.96
Sequence Information
- Coding Sequence
- ATGGATTCAATAATATCTGAAGAAATATTGGATATAAAAGAAGAAATACCTGATGAGGTGGATAGGAAAGATCCTACTTCTTTCCTACCTGAGGAGCCAATGTCTTATGAAATCAagccaaaaaagaaaaagaaaaaaaagaaacaagaagATCCTTTTAAGGGCATAGAGGAGAAAGTGAAATTACCAACCCCAACGGTTTATGAACCTATCAATGATTCAGGATACGAGGCAGGCATTACTATCAAAGTAGAGAAAATAGAAGTGGAATTGGATTTTAATGATTTCGCCAATGACAGCGGTTTGATGGTGGAAGGCCCACAGAGCGAAGACAGCCAGGAGGCACAAGCGAAACAACAAACCCTCCACTCAATCTTCGACAACCTCAGTGAGAACGGGGATGAAGACAGAGATATAGAGTTTGAGAATAGTCTACCCCAGCGCGCCCACAGTTTTGTATGCAACGTGTGTCATCTAGTCTTTCAAACGACCAACACGTTGCGAGTACACCAGCGGAGGAAGCATAGTGCGTTTAGGAAGTCATTCCAACACATCTGCGACTACTGTGGCATGTCCTATGAGCAGAAGAACAGTCTAGTTGCCCACATGAAGAGGAAACACGGCCCAAACTCGACGCCCGATGACAGCGAGGAGAGGGCATGCGATGTCTGCGCATTGGTCTTCAAAGGCATGACCAGACTTCGCATGCACATGCGCAGGAAGCACGGCTCGTTTGAGGACTCCTTCCAGCACGCGTGCAAGCATTGCGGGCTGACGTACGACAAATATAGGAGTCTCGTCGTGCATGTACAACGCAAGCATTCCAAAGTGAAGAAGCCTGATCCAAACGAATGGTACAGCTGCCCGTTCTGTCCAAAGGTCTTTACTAAGAGGGAAACCTACACGAGACACGTGCAAAGGAAGCATAGAGTTGGTGATGAAGAAGGCAATGTGAATGGTACAGACGATGCCCTAAATTCACTGGTGAATGAGGATACTGGGGAGATAACTTGTAAAGAATGCCCTTTGGTATTTTCATCGCTCAATTTTCTCAAGCTGCACATGAGGAGGAAACATAACGCTTTAAGGGAAGATTTTAGGCTTAAGTGTAAGATTTGTAACCTCTCGTATGAGAAGGTTGAAAGTCTGAAAAGGCATATACGTAGGAAACACGATAAGGGTTCGTTCTGTGAAGTGTGCAATAGACAATTTGATAATagagaattatatttaaatcattcGCACGAGAAGTTGATTAATGAATGCAATATATGTGGTCTCATATTTGCCTCCCAAGGAGGTCTGGGTAAGCACCTGCGGTGTACCCATAGTCTTGAATCGCCAAAAACGTTCTTTTGTAATATATGCAACGAAGGGTTCTATGATAAGCGGCAGCTAAAACCCCATTATATGAGGGTACATTTAAAAGTTTCATATACATGTcgttattgcaataaagtgttTAAGGCAAAAGAGAGTTATAGGCGCcatatactttttaaacatcCGATCAAATCGGAAAGCAATAGCGATGAGCACAAGTGTGACCAATGCCCCGAAACATTCCCTGACGAATTTGAACTGTGTCGCCACATTAATATTGCCCATGGGAAGACCGATCCCGATGGTTTGGCAACACTGCTGCCCGTTAAGAAAGAGGAAATAGATAAGCAGCAAATATACCAGTGCAACAAGTGCCCGGAAAGCTTTACAATCTGGGAGGATTTGAGGTTGCATTACGGTCAAAACCATCAGATTATCACAGAGGCGCAGTGTCAAATTTGTGGGGAATTGCTACCGGTCAATGATTTGCCAAAGCACATTAAGGCAAACCACAGTGCGACGATGCAATGCAAATACTGTGAGTTtgagacggacaacaaagcgagcATGACACAGCATTTACTAAGACACACAAACGCTAAGACGATACACTGTGATTTTCCAAACTGTAAGTACAAAACGTTTTATGAAGATGCAATGCACAAGCATATAATCAAGCACAACGACCAGGGTGTCAAGTTCCAATGTACCCAGTGTCCGTTCCAAAcgatgaataaatatatattgaagTATCACGAGGAAGCCCACATTACTGGCAAGAAACGGTATATGTGTGATCAGTGTGACTATGCTACGGTGTTGCCAGCGAATTTAGTACAACATAAGTATAAGCATTCTAAGGAAAAACGGTTTAGGTGTGAAGTGTGCCCGTTTGCAACGAAATACAATACCTCATTACGGTTCCACGTTAAGAAGAAACATTGTGATCTCCCTACATcgacttaa
- Protein Sequence
- MDSIISEEILDIKEEIPDEVDRKDPTSFLPEEPMSYEIKPKKKKKKKKQEDPFKGIEEKVKLPTPTVYEPINDSGYEAGITIKVEKIEVELDFNDFANDSGLMVEGPQSEDSQEAQAKQQTLHSIFDNLSENGDEDRDIEFENSLPQRAHSFVCNVCHLVFQTTNTLRVHQRRKHSAFRKSFQHICDYCGMSYEQKNSLVAHMKRKHGPNSTPDDSEERACDVCALVFKGMTRLRMHMRRKHGSFEDSFQHACKHCGLTYDKYRSLVVHVQRKHSKVKKPDPNEWYSCPFCPKVFTKRETYTRHVQRKHRVGDEEGNVNGTDDALNSLVNEDTGEITCKECPLVFSSLNFLKLHMRRKHNALREDFRLKCKICNLSYEKVESLKRHIRRKHDKGSFCEVCNRQFDNRELYLNHSHEKLINECNICGLIFASQGGLGKHLRCTHSLESPKTFFCNICNEGFYDKRQLKPHYMRVHLKVSYTCRYCNKVFKAKESYRRHILFKHPIKSESNSDEHKCDQCPETFPDEFELCRHINIAHGKTDPDGLATLLPVKKEEIDKQQIYQCNKCPESFTIWEDLRLHYGQNHQIITEAQCQICGELLPVNDLPKHIKANHSATMQCKYCEFETDNKASMTQHLLRHTNAKTIHCDFPNCKYKTFYEDAMHKHIIKHNDQGVKFQCTQCPFQTMNKYILKYHEEAHITGKKRYMCDQCDYATVLPANLVQHKYKHSKEKRFRCEVCPFATKYNTSLRFHVKKKHCDLPTST*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00925982;
- 90% Identity
- iTF_00688041;
- 80% Identity
- -