Ccec005576.1
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- -
- Assembly
- GCA_001625245.1
- Location
- LUGF01010217.1:64281-90148[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00079 0.092 14.3 0.6 1 23 561 583 561 583 0.96 2 11 0.00028 0.032 15.7 2.8 1 23 596 618 596 618 0.97 3 11 8e-06 0.00093 20.6 2.4 1 23 624 646 624 646 0.97 4 11 0.00015 0.017 16.6 5.6 1 23 653 675 653 675 0.98 5 11 1.9e-05 0.0022 19.4 0.3 1 23 681 703 681 703 0.93 6 11 1.3e-06 0.00015 23.1 0.1 1 23 709 731 709 731 0.97 7 11 1.1e-05 0.0012 20.2 0.5 1 23 737 760 737 760 0.95 8 11 0.0004 0.047 15.2 1.0 1 23 766 789 766 789 0.95 9 11 0.00032 0.037 15.5 0.3 2 23 796 817 795 817 0.96 10 11 1.3e-05 0.0015 19.9 1.6 1 23 823 845 823 845 0.98 11 11 0.002 0.23 13.0 0.3 1 23 851 875 851 875 0.94
Sequence Information
- Coding Sequence
- ATGAGTTACTGGCCGCCTGTTGAAGGGAAGGCCGAAGGATGtcATACTAACAATTGCTTCATATGCAACTCAGCGGCGATTGTCGCGAAGGTAGTAGTGGACATATTCAAAGATGAGAGACCACTCAAGTCCGGCAAGAAACTGTGTGATGTGGTCGGTGAGATTGTGAACAAACCGGTGATAGTGGATGCAGTGCACTCCCCGTCGCTCTGCTCCAAGTGCCACAAGATAGTTGTGGAGTACGACTGTTTGTGGAGCAgGTGCAGAAAAATTGAAGCTGATCTTTTGGAGAGCTTCAAAAAGACCCTTACCAAGTATAGTTTTGACTAtgacacatattatgtaaaagaatCGAAGTTAACAGACAAAAAAGATGCTTCGCAGATCACCGATTGGAGGGAAGCGGGTATTACTATAAAGTTGAGCAGGGAAGCCAATGCCTTGCAACCTGGAACTAGCGAAGCTAATTCTACCAGTCAGGAAAGCGGTGAAGCAAGTATTGTCGTCCAGGGAagcaagaaaataattattcctGTCCAGGGAACCAAAGAAGCAAGTATCGTAGTTCAGGGAAGCAAGGAAGCAGGCTCCTCTGAGGAGAAAAAAATGCCGATCTTTGATGGGATGAAGATTGTTCTGTCTGCATCGAAATTGCAACCTCTGCCACCCAATTTCGTGTTAAAATCTGGATCCTTTCCACCGGCGCCGATCAAGACAAATTTTCCAGTTGTCCCGAAATTACAGCCAATACCAAACGCAACACAAATATCACAGACTGGCCCCCTAAAGCCGTTCCAACCCAAAGTGACCATGGACCAAAAACTGCTCACgaacaaaattgtaaaactcAAGACGGAGCTCAAACAGAAATTGCCAATAGTCCGGACTGGCCAATCCATGAAGATAGAAATGTCTTCGCTACTAAAGTTTGGGAACAATAGTGTGTATTCTCTGGATGAGGGCAGATATCTGCCGAAGGCCATGTTGGCTGATGATGTGAAGAGTGAAATTGCATTGAGCGATGACGAGGCAGTTGATAATCCGATGGAAATTGATGAAGAATGCTCGCTGGCGGTGTTGTCGCAGGACAAGTTGGGGGACGGACATATATTCGAGAAGCTCGACGAACAGATGGAGTCGGACAAGGAGGCGTACATGCGCCTGGTGCCGTCGGAAGACATCGTCAAGCTGCAGATCATAGACAAGCCGGACGAGGACGACTCGGAGGAGCAGACGATAGTGGTGGACGAGGATGGATCCATCATACGTCTGGTGTCGGGACAGCGGCTGGTGATAGGGGACAACGAGATCTCGCTGGTGATGCCCGGGGGCGACGGGGACCCCCTGGACGCGGGGGACAGCAGAGATTCCAACGAGGAATCCCAAATCGAGTTACAAGTCTCGGGAGACGAAGAGACCGCCAACGCCATAATAGCGGCAGCGCAGGAGCAGGGCGGTGCGTTCATAAAGGTGGAGTCCGGAGAGATGTACCGCGTGCAGTCCATACAGAGCCGGGAGGACAGCGACGAGGAGACGGACATAGACTTCCAGGTGGAGAGGAAAGAGGACGGCAAATATCGCTGTCGCTTCTGCGAGAAGTACTTCCACTCGGAGATGGTGTTCGAGGGCGACGCCAGCGCGATGATGCAGCACCTGAAGACGACGCACGACGCGCGCATCTACATATGCACGGTGTGCGGCAAGTTCGTGCGCAAGAAGACCGACTACGTCAGGCACCTGGCGCAGCACGCGGACGGGGAGTGCGCGGGCGATAGGGGCCGGCTACACGAGTGCGGCATCTGCCACAAAAAGTTCACCTCGCGCGTGTTACTCGCCGAGCACTCGAACACGCACGCCGGCGCGCGCCCGCACGTGTGCGGCGTGTGCGGCAAGAGCTTCGCGTCCAAATACACGTACCAGTCCCATACCAAGACGCACACGAACCGTCCCAGGCCGCACAAGTGCACTCAGTGCCAGAAGTCGTTCTTCACTCAACAGAACCTGCTGCAGCACGAGAAGACGCACTCCGGCATCAAGGACTTCGTGTGCAAGATATGCAACAAGGCGTTCGGTACGCAACACAACCTCGAGGTACACGGCGTGGTCCACTCGCGGAAGAAGCCCTTTGCGTGCTCCGACTGCGGGAAGGCGTTTGCGAGGAGAGCCGAGCTGCGGGACCACGCGCGCATACACACTGGCGAGCGGCCGTTTGCTTGCGAGGTGTGCGGCGCGCGGTTCACTCAGCGCTCGAACCTGTACTCGCACCGGCGCGCCACGCACATGGACGACAAGCGGTACGCGTGCGACAGGTGTCCGAAGCGGTTCAAGCGACGCAGACTGTTAGACTACCACATAAAGGCGTCGCACACCGGCGAGCGGCCGCTGTCGTGCGAGCTCTGTCCCGCCACCTTCGTGTACCCCGAGCACTACAAGAAGCACGCGCGCATACACAGCGGGGAGAAGCCCTACGAGTGCGAGATATGCGGCAAGACGTTCAACTCGCGCGACAACCGCAACATGCATCGATTCACGCACAGCGAGCGCAAGCCGTACGAGTGTCTGGTGTGCGGGCTCGGATACATGCGGAAGCAGCTGCTCTACCAGCACATGAACACGAGGGGTCATATGGCTGAATCCATTGTGGTCAACCAGCCGCGCCTAGTGGACTCCAACGAGgtTCTGAAAACGGCAATAGACGTGGACGGTAGAAGTATGGACGCCACGGAAACGATGTACGAAACCGAGGATACGTCGGATAGAGACAAGATGCTAGGCAAAACCATCAGCTTACCTCAAGACGGAGAAGCGACGCTGCTAACCATACacAACATCGAGGGCGAACTGAAGACCGAGGGTCTCCTGGAGACTGTGTCGGTGGACCAACTCGATCATGCGCAGAGCAGTGTAGATTTTGGAGACAATAAAAAATTAGGATATAATGACCTTTTGTGA
- Protein Sequence
- MSYWPPVEGKAEGCHTNNCFICNSAAIVAKVVVDIFKDERPLKSGKKLCDVVGEIVNKPVIVDAVHSPSLCSKCHKIVVEYDCLWSRCRKIEADLLESFKKTLTKYSFDYDTYYVKESKLTDKKDASQITDWREAGITIKLSREANALQPGTSEANSTSQESGEASIVVQGSKKIIIPVQGTKEASIVVQGSKEAGSSEEKKMPIFDGMKIVLSASKLQPLPPNFVLKSGSFPPAPIKTNFPVVPKLQPIPNATQISQTGPLKPFQPKVTMDQKLLTNKIVKLKTELKQKLPIVRTGQSMKIEMSSLLKFGNNSVYSLDEGRYLPKAMLADDVKSEIALSDDEAVDNPMEIDEECSLAVLSQDKLGDGHIFEKLDEQMESDKEAYMRLVPSEDIVKLQIIDKPDEDDSEEQTIVVDEDGSIIRLVSGQRLVIGDNEISLVMPGGDGDPLDAGDSRDSNEESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVQSIQSREDSDEETDIDFQVERKEDGKYRCRFCEKYFHSEMVFEGDASAMMQHLKTTHDARIYICTVCGKFVRKKTDYVRHLAQHADGECAGDRGRLHECGICHKKFTSRVLLAEHSNTHAGARPHVCGVCGKSFASKYTYQSHTKTHTNRPRPHKCTQCQKSFFTQQNLLQHEKTHSGIKDFVCKICNKAFGTQHNLEVHGVVHSRKKPFACSDCGKAFARRAELRDHARIHTGERPFACEVCGARFTQRSNLYSHRRATHMDDKRYACDRCPKRFKRRRLLDYHIKASHTGERPLSCELCPATFVYPEHYKKHARIHSGEKPYECEICGKTFNSRDNRNMHRFTHSERKPYECLVCGLGYMRKQLLYQHMNTRGHMAESIVVNQPRLVDSNEVLKTAIDVDGRSMDATETMYETEDTSDRDKMLGKTISLPQDGEATLLTIHNIEGELKTEGLLETVSVDQLDHAQSSVDFGDNKKLGYNDLL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -