Ccec018303.1
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- -
- Assembly
- GCA_001625245.1
- Location
- LUGF01036063.1:153654-167582[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.024 2.8 9.6 0.2 3 23 93 113 91 113 0.97 2 14 0.0017 0.2 13.2 2.8 1 23 215 237 215 237 0.99 3 14 0.00013 0.015 16.8 0.9 1 23 243 266 243 266 0.96 4 14 0.015 1.8 10.2 4.8 1 23 271 294 271 294 0.94 5 14 5.6e-06 0.00065 21.1 0.9 2 23 444 465 444 465 0.98 6 14 0.00038 0.044 15.3 3.4 1 23 471 493 471 493 0.98 7 14 0.064 7.4 8.3 6.8 1 23 545 567 545 567 0.98 8 14 0.0049 0.57 11.8 2.2 1 23 602 624 602 624 0.96 9 14 5.5e-05 0.0064 17.9 0.5 1 23 630 652 630 652 0.96 10 14 0.00053 0.061 14.8 2.1 1 23 661 683 661 683 0.98 11 14 0.00012 0.014 16.8 0.6 2 23 730 751 730 751 0.97 12 14 0.015 1.7 10.3 5.4 1 23 768 790 768 790 0.96 13 14 2.4e-06 0.00028 22.2 0.7 1 23 796 818 796 818 0.98 14 14 5.2e-07 6e-05 24.3 3.1 1 23 824 847 824 847 0.98
Sequence Information
- Coding Sequence
- ATGACCAATATGGCACAAGATTTTGATCCATTAAGTTACGGCTGTGCTGTTTACGATCAACTCATACCCTGCCCAGATCCAGAAATACCGCCTACAATTCCAAATGTTTCCCATCCGAATCACACAAACACAGCTGACAATATGTTACCAGATGGCAATATGTTAACAAACTTAGATAACGAAGATGTAAAACCGGACATAAAGAAGCGTAAGATAGACGGAAGGCTCAAaaatatgtctttaaaaataacacaaaaagattttaaattttatggatGTTCTGTATGCAACATTTGTTACCCTACGTTAGCAGAATTAGATGTACATGTAACAACACACAAGGATAGAATAACAAGTTATGATCTAAGGATAAagaatcaattaaaaaagaaaaagttaaaaaaagaactgaagaaacataaaaagttaaaaagcatGGTGAAGACGGAAACAAATTTAATAGATATAGAAATTAAACCGGAAGATGGGTATATAGGTACAGAGAAAGCGAGCGATGTAAATGATTTGAAAGAAAACAATGAAGAACTAGATGAGAAAAACGTCATATTACCAGCACAAAAAAACATGCCGCTCAGTGAAATGATTGCTAAGAAGCAAgagttattaaatttacaaaaaatatataaatgttttgccTGCCAAAAACAATTTACGctaagttattatttaaagcTTCATGTCAGATCTCACACAGATGAAAAGCCTTACACATGCGCACAATGCGGCCAATCTTTTATAACTGCCAGTAAACTGGGTCGCCACAACAAGAGGTTTCATCTCGCTATCCGATACCAGTGCAGGATATGCTATCGGTTCTTCTCTAGgttcGAATTTTTGACGCGACATTTTGACAAGAAACATCCAGATGACAAGCTAGAGGGTGAACCGTATGATTACAACGCTATACTGCCGTATCTGAAGGAACTGGAGGAGCAACTGAAGGAAAAGGAGgaagagaagaagaaggagAAACCGGACGTGTGGGGGGACCTGTGGCCCCTCCCCGAGGACGCCGCGGTGAAGTCGGAGGTCATCAAGGTGGAGGTGCCtctcgaggaggtacctctcatcgAGGAGGTGAAGCTGGACCCGGTGGACAACGTGGAGATCAAACTGGAGGTGGAGGAGCCCGAGTACAAGGAGGAGGTGGGGGTGatcgacgatgatgatgatcacaAGGACTTCGGCGACGACCGGAGAGACGACAGCGACGTGAAGAACGAAGCGGCCTCCGACGAGGACTACTTCCCGTCCAACACGTGGGCCGTGACGCCCAAGGAGGAGCCCCCGCCGCGGCCGGGCAAGCGCGAGTGCCCCGTGTGCCACAAGCGCGTGAGCTCCGCCTCCTACCTCCGGGTGCACCTCCGCACGCACTCCGGCGAGAGGCCGCACCGCTGCCCGCAGTGCGACCAGCGCTTCATCACCGCCAGCAAGATGCACCGCCACGCGCTCACCCATCCGGAGACGTGGACAGATGACATCAAACCGGAAGTTAAAAGCGAAAAGGAAGAGGGAGATGAGGATAACAAGGTGCGGATGAAGAAGGCCCTCGCCAAGTTCAGCAAGAAGGCGAAGAAGGGGGAGAAGAAGAAGAGCTACCAGCGGCGGCCCTTCTCCTGCGAGTTCTGCCACAAGCGCTTTCTCCACTCGGAGACGCTGCAGATTCACAAGAAGTCCCACGAGGGCGAAGCCCTGGTGTTCAAATGCAACTTCTGTCTGGCGGAGCAGCCGGACGCTGAAGCGCTGAGGTCGCACGAGGGCACGCACACGGGACCGAAGCCCTACCTGTGTACTATCTGCAGCAAGAGCTACACGAAACGGGAGACTATGGTGTACCACCGCAAGTCCCACTCGACGAGCACGCTGCACATCTGCGACATCTGCACCAAGTCGTTCAGCGCTGCGGGCAAACTGCAGCGCCACCTGGCGAGCCACCGCGCCGGCCGCTTCGTGCTGCGCTACGAGTGTCCGGTGTGCGCGCACATGTTCAACACCAAGTACCACGTGCAGATGCACCTCGCCACCCACCAGAGGGAGGGCCTAATTCAAGAGGAGAACCGCAACGAGATCCTGGCGATGGTCCTACAGAACGCGCGCAAGATCCCCAAGCAACCGGACGCGCCCGCCAACCTGTCGGACACGGCGCCCGCGGACGAGCGGAGCCGCGTGTGCAACATATGCGGCGAGGTCTTCCAACACTTCTACTACCTGGAAGAGCATCTCAAGAGCCACGGCTCGAAGATAGCCATCGAGGACAGCGAGAAGGCAGAAGAGAAGAAACATGTCTGCGGAGTTTGCAACAAGAGCTTCAAGCTGCACTACTATCTCAAGCTGCATAGTTTCACGCACACAAAAGAGAAGCCCTTCATATGCCAGCAGTGTGGGAAGGGCTTCATAACCAGGGGCAAACTCAAGCGGCATCTGGAAACCCATTCAGGTCTGAAGAAGTACCAGTGCCACATATGCTACAAGTTCTTCACGAGACCCAGCTATCTCAGGATTCACGTGAGGACGATACACGGCACACAGGACTATAATTTCAGGTTCGACTCGTCCAGGACTGAGGACTACAGCGGGGGATCCATGATCGATGATGTGACACAGAACATAGTCTTCACGCGGAGAGCGGAAGTCGGACAGCCGATGATGAACAGGGCCAGGGACTTGATGAGTTCCCAGAGAGCGGAGCAGATGTTGGTGCAACACGACGAGAGGAAGCCGCTTTTTCTTCTGTGTACGTGA
- Protein Sequence
- MTNMAQDFDPLSYGCAVYDQLIPCPDPEIPPTIPNVSHPNHTNTADNMLPDGNMLTNLDNEDVKPDIKKRKIDGRLKNMSLKITQKDFKFYGCSVCNICYPTLAELDVHVTTHKDRITSYDLRIKNQLKKKKLKKELKKHKKLKSMVKTETNLIDIEIKPEDGYIGTEKASDVNDLKENNEELDEKNVILPAQKNMPLSEMIAKKQELLNLQKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAQCGQSFITASKLGRHNKRFHLAIRYQCRICYRFFSRFEFLTRHFDKKHPDDKLEGEPYDYNAILPYLKELEEQLKEKEEEKKKEKPDVWGDLWPLPEDAAVKSEVIKVEVPLEEVPLIEEVKLDPVDNVEIKLEVEEPEYKEEVGVIDDDDDHKDFGDDRRDDSDVKNEAASDEDYFPSNTWAVTPKEEPPPRPGKRECPVCHKRVSSASYLRVHLRTHSGERPHRCPQCDQRFITASKMHRHALTHPETWTDDIKPEVKSEKEEGDEDNKVRMKKALAKFSKKAKKGEKKKSYQRRPFSCEFCHKRFLHSETLQIHKKSHEGEALVFKCNFCLAEQPDAEALRSHEGTHTGPKPYLCTICSKSYTKRETMVYHRKSHSTSTLHICDICTKSFSAAGKLQRHLASHRAGRFVLRYECPVCAHMFNTKYHVQMHLATHQREGLIQEENRNEILAMVLQNARKIPKQPDAPANLSDTAPADERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIEDSEKAEEKKHVCGVCNKSFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRFDSSRTEDYSGGSMIDDVTQNIVFTRRAEVGQPMMNRARDLMSSQRAEQMLVQHDERKPLFLLCT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -