Ccec010573.1
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- -
- Assembly
- GCA_001625245.1
- Location
- LUGF01020931.1:1-28821[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.019 2.3 9.9 0.8 1 23 16 39 16 39 0.97 2 19 0.0039 0.45 12.1 0.6 1 23 43 66 43 66 0.95 3 19 3.2 3.7e+02 3.0 0.1 3 21 80 98 79 99 0.85 4 19 0.11 13 7.6 0.2 2 23 151 173 150 173 0.96 5 19 0.011 1.2 10.7 0.5 2 20 189 207 188 210 0.92 6 19 2.2e-05 0.0025 19.2 2.4 1 23 216 238 216 238 0.98 7 19 6.6e-05 0.0077 17.7 2.4 1 23 245 267 245 267 0.98 8 19 0.00013 0.015 16.8 2.2 1 23 273 296 273 296 0.93 9 19 0.0027 0.31 12.6 0.2 1 23 447 469 447 469 0.98 10 19 0.0042 0.49 12.0 0.2 2 23 477 499 476 499 0.91 11 19 9.8e-05 0.011 17.1 2.5 1 23 530 553 530 553 0.98 12 19 0.00053 0.062 14.8 0.7 3 23 559 580 558 580 0.96 13 19 0.0085 0.99 11.0 0.2 3 22 597 616 596 620 0.92 14 19 6.5 7.6e+02 2.0 0.2 2 23 628 648 627 648 0.78 15 19 0.00057 0.066 14.7 0.1 3 23 666 687 664 687 0.96 16 19 2.8e-05 0.0033 18.8 1.9 2 23 697 718 696 718 0.97 17 19 0.0054 0.63 11.7 0.1 5 23 727 745 726 745 0.97 18 19 8.9e-06 0.001 20.4 0.6 1 23 751 773 751 773 0.97 19 19 8.4e-05 0.0097 17.4 1.3 1 23 779 802 779 802 0.96
Sequence Information
- Coding Sequence
- NNGGGCGTGGCGCGCGAGCACGAGAAGTGGCACGCAGGCACCAAGTACCAGTGCCCGCACTGTCCTAGCGAGTTCGATAAGGTGACGACGTACCTGGGCCACATCCGCATCAAACACGTGTCCAAGTTCGTGTGCGAGCTGTGCGGGTACACGTTCATCAGCCAGAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGCCTCGCCGACAGGGCCCTGTCGCTGGATGGGCCGTACTGCGCGGAGTGCGATGTGCGCTTCGTGTCGGAGGAGGCGCATGCACGCCACCTCAAGCTGTCCTCGCAGCACAGCAGCGACGACGACCCTAACCGGATACGCAACGACTCGCAGAGCATGAACACGGAGCGCAACGGGCGGGTGATGCGGCGCATCGAGCGGCGGCCGAGCGTGCACCCGCGACACGAGCCGCCCGACGCGGCCGGGCCCGTCACCTGCGAGCAGTGCGGCATCCAACTGCGCGACCTGCGGCTGTACGCGCAGCACTTCCGGCGCGCGCACCCCGACAAGAACCGCACCAAGTACCCCGCCATGAAGTCGCCGTGTATGTGCGAGCAGTGCGGCCGCATCTTCCAGAGCATGGCGCTGCTGAAGGACCACATGTGGGTGCACACGGGCGAGAAGCGCTTCAAGTGCGACCGCTGCGACAAGAGCTTCACGCAGAAGACCAACCTCGTGTTCCACCTGCGCGTGCACTCCGGCTCGCGCCCGTCCTACGAGTGCCCCGTGTGTGGCAAGCACTTCGCCTTCTACAACAACCGCCGCAGGCACATGTTTATCCACACTGGCCTGAAGCCGTTCAAGTGCGACACGTGCGGCAAGTGTTTCACGACGGCGGGCGAGCAGCGCGCGCACGTAGAGCACGTGCACCTCAAGAAGCCGTGGCCGAAGCGAGCGCGCGCGCGCCCGCACCCCGGCTGGCCCGGCCCTgaagaATCACAAAGATCTTTGGTGGAGTTGTCAACAGCTCATGTAGTGAATGTGTCAATACTTTTTGATGATGAAGAGATAAAACAAGAGCAAGATGTAAAGAAGGAACAAAGAGAAGATAAAAATGaTATAGAACTAGACGAAGTGGATCACAAAGATGAGTTTGAGATAGGAGAGTCCACCAGAAGTTCAGACTCCGAGGATGATGTACCGCTAAATAACATCCGGATGAAGCAGGAGTTGGAGATGGGAGAGGGAAACAAGGCTGAAGTGGATGCTGAAGATTTGAAAGACATCACAAACTCCGTGCGCGAGGTGACGCTGAGTATGGAGGAGCAGATGCGCGAGTTCCTGCAGAGAGCCAAGAGCGTCAACTACCTGTGCTCGCCGTACCGCTGCGAGCTGTGCTACCGCGGGTTCGTCGACCCCGGCGCCTATGACAAGCACAGGGAGAAACACGACGAGCGCGCGGGGTCCCAGCAGTGCGGCATTTGTCACTTGCGATACGCGAGCGCGCGCCAGTTGCGGGCGCACACCGCCGCCGCGCACGCGCGCCGCTACCTCTGCGAGCGCTGTCCGCACCGCGCGCACACCAGAAACCAAGCGAAGGAGCACGAGAAGTGGCACCGCGGGCACACGTACACGTGCAACCTGTGCGGGCTCAAGTTCACTAAGCCCACGACGTACCTGACGCACCAGAGGAAGCGGCACTCGGGAGAGAACATCTGCGGCAAGTGCGGCGAGAGCTTCGCCAGCCGGCACGGGCTCATGCTACATCTGAGCAAGTCGCACAAGCGGGACCCGCAGTCGCCGAAATCAGAGCCAGCGGCGGAGCGCTACTGCGCGGACTGCGGGCAGCAGTTCGACAGCGTGAGCGCGTGGAAGCGGCACCTGCTCACCAGCAACAGGCACTCGCTGTGGAGGGACGGAGACGAATGCTCCATCTGCTCGCAGCGCGTGAGCAAACCGAGTAGGAGGGCGCACGCGCGCGCACATCTGCGGGAGCTGCAGCCCAAGCGGAGCGACGCGCCGCCGCTGCAGCTCGCCTGCGACCAGTGCGGCGCGTACGCCACGTCCAAGTCGAACCTGCGCGCGCACGTGCGGCGCGTCCACCTCGGCGTGCGTTACAACAAGAACCTCGTGTGCGAGGTGTGCGGCAAGAACTGCACCTCGAACGCGACGCTCCGCTACCACCAGCGGCGGCACACCGGCGAGCGGCCGTTCGCGTGCGAGTGCGGCGCGCGCTTCGCCGACTCCAACCAGCTGCGGATACACGCGCGCGTGCACTCCGGCGAGCGTCCGTATGCGTGCGCGCTCTGCTCCAAGCGCTTCAGCCAGAAGCCGGCGCTCAACAAGCACTACCGGGTGCACACAGGAGCAAAGCCTTACGAGTGCCAGTTCTGCAAGCGCAGCTTCAGCCAGACCAACTCACTGAAATTGCATGTGCGAGCTGTACATCTTAAACTACCCCCCAACAACAGGAAGAAGGGTcaagagaaaattaaaaaagacaatACAGAAATAACTGATCAAtga
- Protein Sequence
- XGVAREHEKWHAGTKYQCPHCPSEFDKVTTYLGHIRIKHVSKFVCELCGYTFISQKGIDVHKKKKHRLADRALSLDGPYCAECDVRFVSEEAHARHLKLSSQHSSDDDPNRIRNDSQSMNTERNGRVMRRIERRPSVHPRHEPPDAAGPVTCEQCGIQLRDLRLYAQHFRRAHPDKNRTKYPAMKSPCMCEQCGRIFQSMALLKDHMWVHTGEKRFKCDRCDKSFTQKTNLVFHLRVHSGSRPSYECPVCGKHFAFYNNRRRHMFIHTGLKPFKCDTCGKCFTTAGEQRAHVEHVHLKKPWPKRARARPHPGWPGPEESQRSLVELSTAHVVNVSILFDDEEIKQEQDVKKEQREDKNDIELDEVDHKDEFEIGESTRSSDSEDDVPLNNIRMKQELEMGEGNKAEVDAEDLKDITNSVREVTLSMEEQMREFLQRAKSVNYLCSPYRCELCYRGFVDPGAYDKHREKHDERAGSQQCGICHLRYASARQLRAHTAAAHARRYLCERCPHRAHTRNQAKEHEKWHRGHTYTCNLCGLKFTKPTTYLTHQRKRHSGENICGKCGESFASRHGLMLHLSKSHKRDPQSPKSEPAAERYCADCGQQFDSVSAWKRHLLTSNRHSLWRDGDECSICSQRVSKPSRRAHARAHLRELQPKRSDAPPLQLACDQCGAYATSKSNLRAHVRRVHLGVRYNKNLVCEVCGKNCTSNATLRYHQRRHTGERPFACECGARFADSNQLRIHARVHSGERPYACALCSKRFSQKPALNKHYRVHTGAKPYECQFCKRSFSQTNSLKLHVRAVHLKLPPNNRKKGQEKIKKDNTEITDQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -