Ccec030956.2
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- -
- Assembly
- GCA_001625245.1
- Location
- LUGF01053217.1:136823-139787[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.3 6.2e+02 2.3 2.3 1 23 112 134 112 134 0.93 2 19 1.9e-05 0.0022 19.4 2.8 2 23 141 163 140 163 0.92 3 19 1.2e-05 0.0014 20.0 2.0 1 23 169 191 169 191 0.93 4 19 6.8e-07 7.9e-05 23.9 4.4 1 23 197 219 197 219 0.98 5 19 0.00026 0.03 15.8 1.9 1 23 225 247 225 247 0.97 6 19 0.00039 0.046 15.2 5.2 1 23 253 275 253 275 0.94 7 19 0.12 14 7.4 5.6 1 23 281 304 281 304 0.89 8 19 9.6e-06 0.0011 20.3 0.5 1 23 396 419 396 419 0.95 9 19 0.00011 0.013 17.0 7.0 1 23 425 447 425 447 0.96 10 19 0.00055 0.064 14.8 0.3 1 23 453 475 453 475 0.98 11 19 0.0018 0.21 13.2 2.2 1 23 481 503 481 503 0.96 12 19 0.00054 0.063 14.8 0.6 5 23 512 530 510 530 0.96 13 19 2.3 2.7e+02 3.4 1.3 1 23 590 611 590 611 0.88 14 19 0.0014 0.16 13.5 0.6 2 23 757 779 757 779 0.96 15 19 3.6e-05 0.0042 18.5 0.3 1 23 785 807 785 807 0.97 16 19 4e-05 0.0047 18.4 0.8 1 23 813 835 813 835 0.98 17 19 0.0009 0.1 14.1 8.4 1 23 841 863 841 863 0.98 18 19 0.00072 0.084 14.4 1.4 1 23 869 891 869 891 0.97 19 19 0.00064 0.074 14.6 3.8 1 23 896 919 896 919 0.96
Sequence Information
- Coding Sequence
- ATGTTCTCGGATAATCAGGTCGCCGAACACGTCTCTGATGACGATGAACCTCTTTCTAACATGGCTGTGAGGAAGTCGGCCGATCTTTACGACAACTTTTACAGAGCACTGGTCAATTTCCGAAATCATTTCCTCAACgaacataaaatgaaaattaagaGTTCCACGGAGACTGACTCGAGCGCTGACGATTTAGAAGAAAATGACTCGAAGGACATGGACATTCATGAATATGATGACCTAACTAATTGTAACATGAGAAAAGACAAAATGAACGACGAAATCAGGCAAGAACTGAGTCAAGTGCAGACCAAAGTCAAtggaaaaatttattttacgtgTATAGTGTGCGGCAAAAACCTAAGTTCGTCGCATACCTACGTGTTCCACAAACGTATCCATACGGGCGAGCGTCCGTGCGTGTGTCACATCTGCGGCAAGCAGTTCCGCACGCCCAACGGCCTGCAGCGCCATTTGACCGAAACGCACGAAAAGCAACGCttttacatttgtattttatgtcaCAAAAGTTTCGCCAACTCACAGAACCTCAAACAGCATATGCGCATCCACACTGGCGAGAGGCCGTTCGTGTGCACGCACTGCGGCAAGCGGTTCACTCAGAGCGGCTCTCTGCACGCTCATTTAAAAACGCACAGCGAGCAATATCCGCACCAGTGCGCAGAGTGCGGGGCCAAGTTCAAACTGCGCTCCGGGCTGACGAGGCACAAGTTGAAACACACCGGAGAGAGGCCCCACGTCTGCATCCATTGTGGAAAAGGATTTCGACAGAAACACGAACTAAACAGTCATCTGCTGACCCACACGGACGCCAAGCCTCACGCCTGCGCAAGTTGTGGCACGGCCTTCAGGCAACGTAAAGCACTGAGACACCACTGCAAGAGGCTCCATGAAGGCAACGCTGCAGACACGTCTAGTTTAGTATATAACAACGTGGGACCCTACGATGTACCGATCGTCAAAGTTAAAGACGAAATTACAGAAAACAGTAACTGTACAGAAAATCTGCAGTTGAAAATATATCAACGGCAGAGCGAAATTCTAGAGAAACCCGTAATATACACGagtaatggaaaaaaatatgtgatctGCTATTTTTGTAGCAAGAAAGTTCTAGCAACATCTTGGCAACGTCACGCTAGGTCCCACGAGACCACTAAGAGGTACAGCTGTCACGTGTGCGGGCTCGGCTTCAACGACAAGGGCAATCTGTCTCGGCACACGCAAGCTGTGCACAAAAACCACAGACCTCACGCGTGCCACGTTTGcaacaaaaagttttatagaAGAAGTCATCTTCAAGATCATTTGGAATCGCACTCGACGAACCGGAATTACGTGTGCGACGCGTGCGGGAAGGCGTCTAAATCTAGCACCGCTTTGAGGATGCATAAAAAGATGCACGAAGagagttttaaatttcattgtcTCTTCTGTAACGCTcgctttaaaagaaaaaaccaaCTCATAGCACACGTGACCGTGCACACCGGAGAGAAGGCCCACGCGTGCCAGTGTGGCAAGGCCTTCAGACTGAGGAGCCAACTCAACGCACACACCCGGCTACACTTGGGaacgaataaaaatgaataTCAACAAATTGTTGTTCAGATTTTGGAATCCAATAACTATGGGGTCGCGCCCCCTGCTGCAGAGGTACCTGAGAGAATTTGTGATTACTGCAATACAAAGCAACCTGACTCTCAATACAAAGAACATTTAATTTCCACTCACTCTGAGCTCCTGTTCCACTGTGACGAGTGCGACAGCTACGTCGACCGCAAGGACTTCATAGTGCACATGTCACAACACGCCGACGAGTATGCTGCGGAACGCGATCAAAATGAACCTATCTCACAAGTCGAGGAAACTAACTTGATACTAGACACAAATAAAAACACTGAAAACGAAATAACAAGGTCCGCATTGACAGACACAGAACCAGATATAATTAGATATGAAATTGAAATCGACACTAACACCTGTCAAAATGATACTATAATGGAAGACCGCCAAGACAACGACTTTTCCGACCACAGCGATGCAGAATATTTTTGCGAACTCCCCAAGTCCGTGTTTGAAGCTATAGAAGATTCCCAAGATACACAATGCGACAACATAGAACGGGCCACTCAGAACGATACTAGAGAATCTCTAGTCGAAAGAAGCAAGACCAACGACGAAAACCTCACGCAATCGCCTATTTTAGTCAAGAAGGAGGACGGTAAAAAGGCTAAAAAAGAACGTACCTGTCCGATATGCTTCAAAGTGTATACAGTGAGTTCGAGCTACTTCTACCATTTGAAATACTCGCATAAGAACAACAGAGACCACGAGTGCGACATATGTGGCAAGAAGTTCAGCGCAAAACCGACATTGGCGCAACACTTGTTGATACACACGGGAGACTGTCCGTACGAGTGCAAGCAGTGCGGCAAGAAATTCCGAGCGCGCGCCAGCCTGTACATACACGAGCAGACGCACGTCGGCGTCAAGACGCACACGTGCACGGAGTGTCACAAGTCGTTCCGCTGGCGCGCGCACCTGGAGCGGCACCGCAGGCGGCACGAGGCGCGCCGGGCCCACGTGTGCGGCGCGTGTGGGCGGGGCTTCAGCGTGCGCTGCGACCTCTTGCGGCACGCGCGCACGCATGCGCCCGCCGCTCACCAGTGCGCGCACTGCGGGCTCACGTTTGCGCAGTCGAGGTACATGAAAACACATATCATTAAGAAACACTCCACCTAA
- Protein Sequence
- MFSDNQVAEHVSDDDEPLSNMAVRKSADLYDNFYRALVNFRNHFLNEHKMKIKSSTETDSSADDLEENDSKDMDIHEYDDLTNCNMRKDKMNDEIRQELSQVQTKVNGKIYFTCIVCGKNLSSSHTYVFHKRIHTGERPCVCHICGKQFRTPNGLQRHLTETHEKQRFYICILCHKSFANSQNLKQHMRIHTGERPFVCTHCGKRFTQSGSLHAHLKTHSEQYPHQCAECGAKFKLRSGLTRHKLKHTGERPHVCIHCGKGFRQKHELNSHLLTHTDAKPHACASCGTAFRQRKALRHHCKRLHEGNAADTSSLVYNNVGPYDVPIVKVKDEITENSNCTENLQLKIYQRQSEILEKPVIYTSNGKKYVICYFCSKKVLATSWQRHARSHETTKRYSCHVCGLGFNDKGNLSRHTQAVHKNHRPHACHVCNKKFYRRSHLQDHLESHSTNRNYVCDACGKASKSSTALRMHKKMHEESFKFHCLFCNARFKRKNQLIAHVTVHTGEKAHACQCGKAFRLRSQLNAHTRLHLGTNKNEYQQIVVQILESNNYGVAPPAAEVPERICDYCNTKQPDSQYKEHLISTHSELLFHCDECDSYVDRKDFIVHMSQHADEYAAERDQNEPISQVEETNLILDTNKNTENEITRSALTDTEPDIIRYEIEIDTNTCQNDTIMEDRQDNDFSDHSDAEYFCELPKSVFEAIEDSQDTQCDNIERATQNDTRESLVERSKTNDENLTQSPILVKKEDGKKAKKERTCPICFKVYTVSSSYFYHLKYSHKNNRDHECDICGKKFSAKPTLAQHLLIHTGDCPYECKQCGKKFRARASLYIHEQTHVGVKTHTCTECHKSFRWRAHLERHRRRHEARRAHVCGACGRGFSVRCDLLRHARTHAPAAHQCAHCGLTFAQSRYMKTHIIKKHST*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -