Ccec024725.1
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- Mblk-1_1
- Assembly
- GCA_001625245.1
- Location
- LUGF01045388.1:51420-61780[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-15 2.9e-12 47.2 0.0 1 39 76 115 76 120 0.93 2 2 2.2e-18 1.5e-15 57.7 0.0 1 43 240 283 240 285 0.95
Sequence Information
- Coding Sequence
- ATGTGTGACTTGGACGTGTCTAACACTTCAGCACCTCAATCAGCCCGGCTGCTCGTTCGCAATAAAAGGCCAGGAAATGATTCCGGAGTAATACAATTGTACCCAGCATTTCCATTAGCGATATCAAAAACATGCCCCATGGGGAAATGGTGGCGATTCGCCATGGTCACACCACGATTAAAACGAGCGGTTGTGGACGGCGTGGGCAGCAGCAGGCGAACGTACACCGAGGACGAGCTGCACCAGGCGCTCCGGGACATCCAGTCTGGCAAGCTGGGCACCAGGCGAGCAGCAGTGGTCTACGGCATACCGCGCTCCACCCTCCGGAACAAAGTCAACAAGTTTGGGCTGACTACAGACACGGGACAGGACTCAGACCCTGACAGTGACCCGCTAAACGCGCCGTCGCCGCTTCTGCTACCAGCCTCAGTCTTCGCGGACCCCCCCTCAAACCAGCACCTCTTCACGTCGCTAAGTGACGTCATAGCTAAGAGCATCAGTCAGAAGTTCCAGCAGCCTTTAGACAGGCCTCCACAGCCCACGGACCTTCAGTTCATGAGGGCGCCCGACAGACACGTCTCCGTGATCAAAACGCCGCCGGAAAACCAGAGGAACTACGCGATGCCCAGCCACTCCAAGGGCACGACGAATAACAACGGCCAGCCCGCCACGGGGGGCAAGGGCACGAGGCCGAAGAGGGGGAAATATAGAAACTACGACCGGGACAGTCTAGTGGAGGCCGTGAAAGCGGTCCAGCGAGGCGAGATGTCGGTCCATCGAGCCGGATCGTACTACGGCGTGCCGCACTCGACGCTAGAGTACAAGGTGAAAGAGCGGCATCTCATGCGGCCGAGGAAGAGGGAACCGAAGCCGCAGCAGGACATCAAGCCGCAGCCGCCGAAGCCGGCTCCGAAGCCAGCGAAGCCGTTTTCGAACGGCCTCAACGGTCCGGAGCCGAGCTACCCGCCTGGATATCAGTTCTGGCCGGGAAGCGGCTTCCCCCCTCCCGCGCCGGATTTGTACGCTTCGCACATGATGCGGCGGCAGGAGGCGCCGCCGCCAGCCGCGAATGGTTCCTTCCTCGAGGGGATTATCAGGTCGAGCCTGGAGCGGCCGGGGGCTGCGCTGTTGCTGGGCGGCGCCCGGCGCGCGGAGCCCTGCGGCGAGCCGCCCACGCGGCGCCCACGGCTGGAAGACCACGCGCTAGCCGCCGACCTCCGAGAGACGGTCCAGCGGCTACGGGCGGACAAGCTGCGCCCGCGCAACGNNNNNNNNNNNNNNNNNNNGACGCCTAGCCGCTGTGATACTAACGTAGACATTCCGCTCCCCTCCCCCCCGCGCGTCCACACCAAATATCACAATAGTTACCCGAAGTCACAATATGAACACGGCTTTACAGATGCGATATCACAATTAGTTTGTAGACCGAGCGAGTTGGCGCTTCGTTGGCGTCGAGTTGGCGTTATGTTGACGTCGAGTTGGCGTTACGTTGGCGTCGGTTTGGCGTTGAGTTGGCGTTATGCTGGCGTCGGTTTGGCGTTGCCGCTCGGTGTCGTTCCGGGGCGCTCGGGTGGACTGACATTTTCGAGTTTGTGCACGTGTGGAGGAAGTCTCGGCGGGTCCCTCGGGCCCCGAAGCCCTCCCCCTACCCTCATCCGGAAAGACCTCGAATTTTGA
- Protein Sequence
- MCDLDVSNTSAPQSARLLVRNKRPGNDSGVIQLYPAFPLAISKTCPMGKWWRFAMVTPRLKRAVVDGVGSSRRTYTEDELHQALRDIQSGKLGTRRAAVVYGIPRSTLRNKVNKFGLTTDTGQDSDPDSDPLNAPSPLLLPASVFADPPSNQHLFTSLSDVIAKSISQKFQQPLDRPPQPTDLQFMRAPDRHVSVIKTPPENQRNYAMPSHSKGTTNNNGQPATGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQQDIKPQPPKPAPKPAKPFSNGLNGPEPSYPPGYQFWPGSGFPPPAPDLYASHMMRRQEAPPPAANGSFLEGIIRSSLERPGAALLLGGARRAEPCGEPPTRRPRLEDHALAADLRETVQRLRADKLRPRNXXXXXXXTPSRCDTNVDIPLPSPPRVHTKYHNSYPKSQYEHGFTDAISQLVCRPSELALRWRRVGVMLTSSWRYVGVGLALSWRYAGVGLALPLGVVPGRSGGLTFSSLCTCGGSLGGSLGPRSPPPTLIRKDLEF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -