Ccec008547.1
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- -
- Assembly
- GCA_001625245.1
- Location
- LUGF01016863.1:59737-66574[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.4e-11 4.8e-08 33.6 0.0 2 39 159 197 158 201 0.90 2 4 1.1e-11 6.9e-09 36.3 0.2 1 39 212 250 212 253 0.94 3 4 9.8e-13 6.4e-10 39.7 0.5 2 45 268 311 267 311 0.96 4 4 4.1e-17 2.7e-14 53.7 0.0 2 42 319 360 318 362 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGTCACGACTTGCGCCTTGTGAAATGTGAGCCCACCTCCAGCGAGCACGATGGCGCACAGCCCACTACATCGGACTTGTGGTACCAAGCGGAACCCGGGCCGCACTCGGAGAGTCCGGCATCACATCTACTACATCATTTACAGGGAACACTGGAGGAGCTGGCCCCCGCGCCGGCTGGCCCCGCGGCGATTCCGGTGCGCGAGCATCTGCCTTCACCCGGCGAGGTCTCATTGGCGACCCTACAGCCCGCGCCACTTGGAAATGCAATGGGAGCTTCAATCATCGACATGCACGTAAAGATGATGAATGTGCAAGAAGTGGCAGATTCCGCGGACTTTGTGCCTCTGATGGCCGTCAAAGACGAACCCACATCTGAAGGTGAGCAGGCTGCGGTGAGCGGCGACGACACCAGCGACTCAGGCGGCGCCCCGGACGGCCCCGGCCGAGGCAGCCCCAAGGCGTGGTCGCCTCAGGACATGGACAACGCGCTTGACGCGCTCAGGACACACCACATGAGTCTCACCAAGGCTTCCGCTAAGTTCGGCATTCCGTCGACCACCCTGTGGCAGAGAGCGCACAGACTGGGCATAGACACACCTAAGAAGGAGGGCACTTCCAAGTCCTGGAGCGAGGAGGACTTAAAGTCTGCGTTGCACGCGCTCCGGGCTGGAACTATATCTGCCAACAAAGCCAGCAAGGCTTATGGTATACCCAGCAGCACGCTGTACAAGATAGCGCGGCGAGAAGGCATCCGCCTCGCTGCGCCGTTCAACGCCGCGCCCACCGCGTGGCGCCGCGCCGAGCTAACGCGCGCGCTCGCCGCCGTACGCGCCGGCGCCGCCGTTCAGCGTGCCGCCGCCGCCTACGGCATCCCTTCCGGCACGTTATACGGAAGGTGTAAGCGAGAAGGCATAGAGTTGTCCCGCTCCAACCCTACTCCGTGGTCGGAGGGCGCCATGGGAGAGGCACTGGAAGCTGTCAGGGTCGGTCAGATGTCCATAAACCAGGCGGCGATACACTACAACCTGCCATACTCGTCGTTATACGGGAGGTTCAAGAGGTGCAAGTACCAACCGGCGCAGACAACTCCACCGGACACAGCGTTTGCTGACGCGGCCCACGACACGACACCTCCAGTCCCCGGCCCTGACGAGTGTCACGAGCTACAGGGCCGGTCCTTCAGTGAACAGACGCGGCCCTTCAGCGAGCAGGCGCGTCCCTTCAGTGACGTGCGCCGCGCCCTGTCCGCGCTGGAGCCCTACCCTCTAGCGTGTGACGTCACCAGCTGA
- Protein Sequence
- MPGHDLRLVKCEPTSSEHDGAQPTTSDLWYQAEPGPHSESPASHLLHHLQGTLEELAPAPAGPAAIPVREHLPSPGEVSLATLQPAPLGNAMGASIIDMHVKMMNVQEVADSADFVPLMAVKDEPTSEGEQAAVSGDDTSDSGGAPDGPGRGSPKAWSPQDMDNALDALRTHHMSLTKASAKFGIPSTTLWQRAHRLGIDTPKKEGTSKSWSEEDLKSALHALRAGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRAELTRALAAVRAGAAVQRAAAAYGIPSGTLYGRCKREGIELSRSNPTPWSEGAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPAQTTPPDTAFADAAHDTTPPVPGPDECHELQGRSFSEQTRPFSEQARPFSDVRRALSALEPYPLACDVTS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -