Cspl042776.2
Basic Information
- Insect
- Calopteryx splendens
- Gene Symbol
- -
- Assembly
- GCA_002093875.1
- Location
- LYUA01000535.1:538116-555137[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0075 5.2 10.3 2.8 1 23 72 95 72 95 0.97 2 22 0.71 5e+02 4.1 1.5 1 23 168 191 168 191 0.94 3 22 3.6 2.5e+03 1.9 3.7 1 23 198 220 198 220 0.97 4 22 1.8 1.3e+03 2.8 3.0 2 23 226 247 225 247 0.91 5 22 0.018 13 9.1 0.6 1 23 259 281 259 282 0.95 6 22 0.03 21 8.4 2.9 2 21 581 600 580 601 0.94 7 22 4.1 2.9e+03 1.7 0.4 2 23 992 1013 991 1013 0.89 8 22 6.8 4.8e+03 1.0 2.1 1 10 1070 1079 1070 1093 0.79 9 22 1.9 1.4e+03 2.7 0.5 2 23 1118 1139 1117 1139 0.92 10 22 0.1 71 6.8 2.6 1 23 1147 1169 1147 1169 0.97 11 22 0.082 57 7.0 1.0 1 23 1207 1229 1207 1229 0.96 12 22 0.005 3.5 10.9 6.2 1 23 1237 1259 1237 1259 0.99 13 22 4.2 3e+03 1.7 1.8 1 23 1316 1338 1316 1338 0.97 14 22 0.0033 2.3 11.5 1.3 1 23 1372 1394 1372 1394 0.97 15 22 0.058 41 7.5 0.9 1 23 1492 1514 1492 1514 0.95 16 22 0.0015 1 12.5 0.5 1 23 1520 1542 1520 1542 0.98 17 22 0.05 35 7.7 0.3 1 23 1620 1642 1620 1642 0.96 18 22 0.0007 0.49 13.6 0.3 1 23 1648 1670 1648 1670 0.98 19 22 0.0037 2.6 11.3 2.6 1 23 1761 1783 1761 1783 0.97 20 22 0.0017 1.2 12.3 2.5 1 23 1789 1811 1789 1811 0.99 21 22 0.0058 4.1 10.7 2.4 2 23 1908 1929 1907 1929 0.95 22 22 0.005 3.5 10.9 0.4 1 23 1942 1964 1942 1964 0.97
Sequence Information
- Coding Sequence
- ATGTCGAAGGCGGCCATTATGGTGGGCGGTGGGGTGATGACCGGCGGGGGGAGCAGCAGCGGGGACGAGGAGGGTggcggtgcgggggaggggaacTGGCTGCCGCAGTGCAAGATAAAGCGCAATTACATCTGCCACTGCAACTACTTCACGCAGAACCCGAGGCTCTACCTGTATCACCTGAGGGATGTCCACGGGGAGAGGATACGGGTCTACGAGTGCCCCAACTGCCTCTACGCTTCGAAGCACAGCCAGAAGCTGCAGAGGCACATCCACATGGTGCACGTCGTCGGGAGCACCAAGGGCAACAACAGCACCAGCGCCAACAGCCATGCCAAGGCGTCGGGATCCGCGAGGAAGAGTGGGGGGGCTTCGGCCGAGAAGAGGAGGTCgggagttggggtggggggggctgTGGGAGCGGCGGCGGTTGGAATGGTGTCGGCGGCGGCTGTGGTCGAcgtcgaggaggagggggcggagatgTCTCCTTCCGCCACATTTCGCTGCTCTGCGTGTTCGTTTTCTAGCCGCAGCCGGTCCCTGGTGATGCGGCACGAACACATAGCGCACGTACTGAAAAAGCGATTCTTTCGCTGCGGGAAATGTTCGTACGCAACACATGTGAAAGCTCGGTACACTAAGCACGTGAAGTACCATTCCATGCCCATGATAAAGTGCGAAAGATGTGACTTCCGGACGCCTTACAAGTGGAACTTGGACCGTCATTGCAAGAACCATTCAAGCGATCCATCAGCAAACGTACCTGGTGCTTTCAGATGTCCCATTTGTGACTTCTCTGCCGATATCAAGCAATCGCTGACGGTCCATGTTCAAAACCACCATCTTTCTCCTGAGCAGGTACAGGCTCGTGCTGCTCGTAGAAGGAATAAGGTTGGAGCCAGTGACTCAGCGGAAGCTGAGGCAGCAGCAATAACTGCTGGAGGAACCATAGACAGTGAAGAAATGGAGCTCTTACgaatggaaagggaggaaaattatttccagGGTGGGACCTATGGACGAATGTCTTTGGATAGTAGTCGCTCTGCCCGTCTGCAAACACCTGAAGCACCTGCAAGGGTCTCAACGACTTCCTCTGGAGGGAACAATAAATTTAAGGGTAAAGGAGCCACACCCGTGTCCCCTACAGCCTCTGCATCACTTCCTATCCTGCGGATTCCAAATCTGAAGTGTAGGCCTCCAAATGAGGAGGCTCCTGCAGCGGTGGATGTCGAAGTTACCATGAGTGACAAAGATATGAATGCCCTCATCAATGCAGAATCATCGCGGAACAGTGCACTGAAGGACTTTGCCTCGCTCATCGGGGATCTACCTGATGAAGGGGAGAGGACTTCAAGGCCCAGCACGCCACCTACCAAGAACGTGGCAGCAGGGGATGGCCAAGCGGAAGTGGGAGAGGTGGTCAGTACGCCCACCTCAGTGACCTCGGAGCCATCGTGTACAAGCATATCGCCGCCCACCCCGAGCAAGAAGACCTGTGCTTCATTTTTCGATCGCCTGAAGGAGAGATTGCTggttggagggggggatgggCTGACGTGCGAGATCTGTGGCCACGAGTCCAAGTGCCTGTCGGAGAAGGCCCGTCACCAGAAGCTGCACGACTCGACACCCGAGGGGATGCAAGTCGAGGAGAGTGTGCCTCCGAATACCACCCTGGGGAAGAGGGGTCGAATGATCTTGGGTGGGAATGCCCTGATGGCCCTGTCATCCACGAGGTGTCAGCACTGTCGGCAGAGGTGCAAAACGAGCGCCGATCTGATGGTCCATCTGCAGTCGTGTCTGAATTCCCCGAAGGatgagaagggagaggaggaggaggcggcggcgggcgagagaaagaaagcggcggagagggaggagaaggagagggctGCGAAAATGAAGAACGAGGCTATCACCAAAGAGGCCATGAAGCGGGCTATTAAAGACACCAtggaggaagaagatgaggaggaagagggagacgAGGAAGAGGAGCCTGAGGAATGCGAGGATGGGGAGCCGCACCCAATGGAGAACAAAGTGTTCGTTTGGAACAACTGTGCACAAACAGGAGACAATTCTGCGAGTGGGGTGCAGGGCACGCAAGTTTCTTCCGCCTCGGATGGAGAAGGGGGTGGTCTCCAGAGTGGGGAGGATGGCGGCAGCTATCCAGAGGATGGGGAAGGGTTGGTCGGTGTGGAGACAGCCCCTGGTATTGGAGCTGTCACTGGTCGTGGTGGATATGAAGGTGGAATCAGCCCAGGAGGAAGGGCGACATTGAAAAAGGTATTCAAGTGCCCCCAGTGTCCTTTCTGGGCCACTACGGCCTCCCGCTTCCATGTCCATGCAGTTGGTCACCTAAACCGAAAACCCTTTGAATGCTCTGCTTGTGGCTACCGCTCCAATTGGCGTTGGGACATCACAAAACACATACGTCTGCGTGCCACGTGGGATGAAGCCCATCGCAGTCCACCAGATGGCACTGATGGGGCAGGTCCCAGAGTGCTCATGACGGATGAAACAGGGCGCCGGAACTATTCAAAATACAACCGACACCTGACCCTGGTTCGAGTGCATGAAATGATATCCTCTGATCAAGGGATGGGGGGTGATAGTTCACCACTGTCATCCTCCTCACCCTCGGGAGTCATGATGGAGAATGGCAAAGTGACCAAATCCATGGTGATGCTCCTGCCGGCACCACCACGGCTCACACCAGCCCCAGTTCAACCGGTGAACGTGGTTGAAGATGGTGAGGCCACACCACCTCTTCTGCGCCCACCACCTCCCCTTAGGGCAGCCATCTCATCAACTTCTGTTGCGAGGAGGGTGAACTCGAGTATGAAAAATTCATACCAACAAGTGGAGGCAGAAGGAGTCGTGGCTCAGGGTGTGAAGAGACCAGCCAGCTCATCTCAGGGTGGGGAGGCGAAGGAGGGTGGAAGCACCAAGCGTACCCTTTGGAAGTGCAAGAAATGCAATTACAGAGATGCCAGCCGAGAATTAATTTTGGCCCATGTGAGGCAGCATTATGCTGCAGCTCAGCAAACTCAATCATCTCGACCCCTTCCACAGCAGCATCAGCCCAAAGCATCGGGTAAATTTGAACAAAAGATGGAAACTGAGGATGGAACTGAGCCAATGGACACCAGTGGAGATGAGCCAGGACACATTGGCAAGGGGAATGAGACAAAGCCCTTTCAATGTGGTCATTGTGGTCGGATATCAAATTGGAAGCATGTCATCCAGAGACATTGTCGTCTTAAGCATGGAGGTGTTGTATTAGTAATTGAGCAGCCAACCTTTACAGAAGAGGAAAATCTTGATCCATCAAgtTCTTGGAGGTGTGAAAAGTGCCCTTACCGAGCCTATGACCTACTAGAATTACAGACACATGCCACCCATCATATTCCAAGGCCTGGTGCAGTCTTCAAGTGCACTTTCTGCCCATATTATGTGTTTGAGAAAACGCACCTAGTAGGACACATGAGACTTCATGGTGTTAATATGCCGATGAAACCAACTGGTGCACTGGAGAATATGGAACAAGGCCAAGAATCATCTAAGGGAGAATTGAAGAAAGCTGAGGGGAATGAGGGGGGTAAAAGATACAGCTGTGTTGGCTGCCCATATGTCAGTGACAGCAAAAGCCAGTTCCTGTATCATAAGCAGTTTCACCGGCCACGAGGAGTGGCACCTTTCAAATGTTCCTTCTGCTCCTATAGTGTTTCCCGTCGTCACCTCCTGCACCAACATCTCCGTGTTCATGGTGTTTCGGTCCCTGCAAACATGATGAGGAAAGATGACCTCGGAGGCAACATTGAAATACCGAAACGGCCCTCTGTTTCCCGAATTTCGCAGCCAGTGCTCGACACTAGTCGTTTGAGTGATGTTCCTCTTGTTTGGGTGTCGCGAGCTGGAAAGTTCCAGAAGATGTTCAAATGCCGTTTTTGTCCACATGTGAATGTACGTAAGATAAACATTCAGGAGCACGAGAAGATGCACAAGCAGCGTAAGGCATCTCCTCTGAATCCTCGACATGGGCAGTCAATGCAGGGTATGGACAACTCGCAAAGCAACAGCCCCAGGGTAGGTGCCAGTCCACACAAGTGCCCTCAGTGTAACTACAGTTGCAACAATGCTGGAGTCCTGTCTGCTCATGCCAAAGTTCACCTCGACTCCTATGGAAAAGTGCATTGCCTTGTGGATGTAAATCGTGCCGATGAAGATCAGATAGCTGAACTGGAGGCTAACTTGATGCTGAGTGGTGTGGAACATTCTGAGCCAGATGGTGGTGGTATTGCTGTTGGTAGTACCAGTGGCATTGCCAATAGTATCCCCACTGGCATTGGCAATGGAGGTGGTGGTGGACGAGCTAGTCCTGAAGAAGATCTGGCCGAATGTGCACCTGAAGTTCCTGAAGTGCCTGACAGTGCAGTAGATTCATCCGAGGGACGCACTGTACACTTCTGCCCCTCTTGTCCAGCTAGGTTTGTTTTTGAGAGGGAACTTGTGATCCACAGGCGTTTCCATGGGATACGCCTCCCATTTAAGTGTGACGTATGTTCCTATGCTGCCAGACAGCGTCCTCACCTCTTGGCTCACCTCAAAGTTCATACCCGTGAGTATCAAGAGAAAAGTGCTGCCCTCATCGCGACCCACTCTGTGTCTGAACTCCACCCACAACCCCAAGTAGCCAATGCCCTCCCCAGTGACCCCTTGCATACAGATTCGATGTGGATTGTTGAACCCAAAACACAGTCTCCCCAAGTGAACCAGGAAAATTCGGCTGACATACCCCAAGTATCCACTGGGGTCTCTTCTCCTGCTTCTCAACCAAATAAACACTATGCTTGTGATCGATGTCCCGCTCGCTTTTTCAAGAGTGTTGCTCTGCAGTATCACCTAACCCTTCATGGTGGCCCTGGTCCATACCGCTGCAGGACTTGTGATTATGCGGTGAAGACTTACGGCAACCTTGTGAGGCATGAGATGATCCATGGTTCATCAGATACACCAAGTCGTAATGCATCGGTCAGTCACAACGCTCCAGCAGTTGTACCTCTCTCGGGTACAGAACTATTCCGCCAGAGGGAAGCAGCTGGGCAGATGGATAATGTGCCATCTTCTCCCACGGGTCCCATTCCCTCCCCAGTCACCCCATCCTCCATTCCACCAACAGTCGACCCACAGTTTGGCACCCTTATGCATGGGAATCCGGACTTCATATATCCGacgtattttaaaaatgggaaattaaaagaaaaacgttaCAAGTGCCACAAGTGCCCATCTGCTTTTGAAAAGCGTGAGCAGTACAAAGTTCATCTTTCCCTGCATGGTTCAAAACAAAAGTATCGCTGTGATAAGTGTGATTATGCAGTCAAATACTGTGCAAACTATATCCAGCATGTGAGGAAACACACCAAGTGTGAGGAAGCCCGGCTGGCAAGGCAGCAGGATGAGTCAGCCAGTGGCGTTGTGCAGAACCTGAACTTTGAGGCACCCCCCACACCAATAGCTGCCATATCTGCACCCCCCTCGTCTTCCTCCCATTCGTCACCTTCCCGCCCTGTCAAAAGCATTGCACCAGCAATTCCACCTGCAATGTCTACAGCTGAAAAGCAGCAGGCACTCCTGAGGCGACTCCGCTTGGAGGCTGTGGGTGCCCaggagcgagaggaggaggagagaaggaagaggaatgtGTTCCTCTGCATGCGTTGTCCATACAACACACACCGAAAAGACTCCCTAGAGGCACACATGCGACGCCATCCTGGAGCAACAGAGCTGAGTGTGGCTCCAAGCCCATTTCCCTGTCCCTTCTGTGACTATGCAGCACCACAGTCGCACTTCCTCAGGGAGCACATCAAACTCCACTTCAGAGCCACCAAAACGCTACCCAGGCCAGAGGCATATCTCAGTATTGAAAAGATTGAACTATGGGAGGGTGAGAGCAAGGAAGACGGAAATGTGATTTTCAAGGATACAGGGAAGGAAGGGTTTGAGCGATTCCTACCACCAGATGATGGCTCTGAAATGGAGGAGAGTGGAGATGACTCTGGAAGGACATATGTTGATCCAGAATCGGGTGAGGAAGCTGTCGAGATGAAGGACGATGATGATGTAACAGAAACCAAAGGAAAGGAGACAGGGGTTGACTGGACCATAGGAGATATCTTGGATGTGGATGATTCGAGTCGAGATGGAGATGAAGTAGAAGAGAATAAGGCTATGGAATGCACGTCTGTTAGTTAA
- Protein Sequence
- MSKAAIMVGGGVMTGGGSSSGDEEGGGAGEGNWLPQCKIKRNYICHCNYFTQNPRLYLYHLRDVHGERIRVYECPNCLYASKHSQKLQRHIHMVHVVGSTKGNNSTSANSHAKASGSARKSGGASAEKRRSGVGVGGAVGAAAVGMVSAAAVVDVEEEGAEMSPSATFRCSACSFSSRSRSLVMRHEHIAHVLKKRFFRCGKCSYATHVKARYTKHVKYHSMPMIKCERCDFRTPYKWNLDRHCKNHSSDPSANVPGAFRCPICDFSADIKQSLTVHVQNHHLSPEQVQARAARRRNKVGASDSAEAEAAAITAGGTIDSEEMELLRMEREENYFQGGTYGRMSLDSSRSARLQTPEAPARVSTTSSGGNNKFKGKGATPVSPTASASLPILRIPNLKCRPPNEEAPAAVDVEVTMSDKDMNALINAESSRNSALKDFASLIGDLPDEGERTSRPSTPPTKNVAAGDGQAEVGEVVSTPTSVTSEPSCTSISPPTPSKKTCASFFDRLKERLLVGGGDGLTCEICGHESKCLSEKARHQKLHDSTPEGMQVEESVPPNTTLGKRGRMILGGNALMALSSTRCQHCRQRCKTSADLMVHLQSCLNSPKDEKGEEEEAAAGERKKAAEREEKERAAKMKNEAITKEAMKRAIKDTMEEEDEEEEGDEEEEPEECEDGEPHPMENKVFVWNNCAQTGDNSASGVQGTQVSSASDGEGGGLQSGEDGGSYPEDGEGLVGVETAPGIGAVTGRGGYEGGISPGGRATLKKVFKCPQCPFWATTASRFHVHAVGHLNRKPFECSACGYRSNWRWDITKHIRLRATWDEAHRSPPDGTDGAGPRVLMTDETGRRNYSKYNRHLTLVRVHEMISSDQGMGGDSSPLSSSSPSGVMMENGKVTKSMVMLLPAPPRLTPAPVQPVNVVEDGEATPPLLRPPPPLRAAISSTSVARRVNSSMKNSYQQVEAEGVVAQGVKRPASSSQGGEAKEGGSTKRTLWKCKKCNYRDASRELILAHVRQHYAAAQQTQSSRPLPQQHQPKASGKFEQKMETEDGTEPMDTSGDEPGHIGKGNETKPFQCGHCGRISNWKHVIQRHCRLKHGGVVLVIEQPTFTEEENLDPSSSWRCEKCPYRAYDLLELQTHATHHIPRPGAVFKCTFCPYYVFEKTHLVGHMRLHGVNMPMKPTGALENMEQGQESSKGELKKAEGNEGGKRYSCVGCPYVSDSKSQFLYHKQFHRPRGVAPFKCSFCSYSVSRRHLLHQHLRVHGVSVPANMMRKDDLGGNIEIPKRPSVSRISQPVLDTSRLSDVPLVWVSRAGKFQKMFKCRFCPHVNVRKINIQEHEKMHKQRKASPLNPRHGQSMQGMDNSQSNSPRVGASPHKCPQCNYSCNNAGVLSAHAKVHLDSYGKVHCLVDVNRADEDQIAELEANLMLSGVEHSEPDGGGIAVGSTSGIANSIPTGIGNGGGGGRASPEEDLAECAPEVPEVPDSAVDSSEGRTVHFCPSCPARFVFERELVIHRRFHGIRLPFKCDVCSYAARQRPHLLAHLKVHTREYQEKSAALIATHSVSELHPQPQVANALPSDPLHTDSMWIVEPKTQSPQVNQENSADIPQVSTGVSSPASQPNKHYACDRCPARFFKSVALQYHLTLHGGPGPYRCRTCDYAVKTYGNLVRHEMIHGSSDTPSRNASVSHNAPAVVPLSGTELFRQREAAGQMDNVPSSPTGPIPSPVTPSSIPPTVDPQFGTLMHGNPDFIYPTYFKNGKLKEKRYKCHKCPSAFEKREQYKVHLSLHGSKQKYRCDKCDYAVKYCANYIQHVRKHTKCEEARLARQQDESASGVVQNLNFEAPPTPIAAISAPPSSSSHSSPSRPVKSIAPAIPPAMSTAEKQQALLRRLRLEAVGAQEREEEERRKRNVFLCMRCPYNTHRKDSLEAHMRRHPGATELSVAPSPFPCPFCDYAAPQSHFLREHIKLHFRATKTLPRPEAYLSIEKIELWEGESKEDGNVIFKDTGKEGFERFLPPDDGSEMEESGDDSGRTYVDPESGEEAVEMKDDDDVTETKGKETGVDWTIGDILDVDDSSRDGDEVEENKAMECTSVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -