Basic Information

Insect: Calopteryx splendens
Gene Symbol: PRDM1
Assembly: GCA_002093875.1
Location: LYUA01000080.1:101809-113001[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3e-07 0.00021 24.2 1.1 1 23 987 1009 987 1009 0.99

2 5 8e-06 0.0056 19.7 4.9 1 23 1015 1037 1015 1037 0.98

3 5 1.3e-06 0.00089 22.2 4.3 1 23 1043 1065 1043 1065 0.98

4 5 0.0008 0.56 13.4 1.5 1 23 1071 1093 1071 1093 0.97

5 5 0.00013 0.095 15.8 0.8 1 22 1099 1120 1099 1120 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3e-07	0.00021	24.2	1.1	1	23	987	1009	987	1009	0.99
2	5	8e-06	0.0056	19.7	4.9	1	23	1015	1037	1015	1037	0.98
3	5	1.3e-06	0.00089	22.2	4.3	1	23	1043	1065	1043	1065	0.98
4	5	0.0008	0.56	13.4	1.5	1	23	1071	1093	1071	1093	0.97
5	5	0.00013	0.095	15.8	0.8	1	22	1099	1120	1099	1120	0.96

Sequence Information

Coding Sequence: ATGGAGGAGGGCCCGTGGGACGTCTCGAGCATCTGCGAGGAGGAGTTCGAGCAGCACGTCGTCTATATCGTCCCGGACCAGCCAGTGCCGACGTCGTCGACGCCAGCGTCTTTCCCCGCACCCGGGTCCGACCCCGAGAGCCGCCGCCggcggaggcggaggaggaggagcagcggCGGTAGCCGTGGGCGGGAGAGCCCGGAGAAGGGGAACGAGGCGgacgggggcgggggtggagacgGAGGCCCCAAGGAGGAGGGCGATGGAGGCCCGGAAGACGACGAGGACCTCGAGGTGGACGTTGGACCactggaggacgaggaggaggacggcgTACCCAGCCGGGCAGAGGCCTCGCTGCCGAGGAACCTCGTCCTCAGGCCCTCTCAGGCCCTCAGTGACATACAGGGAGTTTGGAGCACCAGCTACATCCCCAGAGGAACACGGTTTGGACCCCTTGTTGGTGAAGTCTACACCAAGGATGGTGTCCCCAAGACTGCCAACAGGAAGTATTTCTGGCGGGTATACAAAGACAACGAACTATTTTACTACATCGACGGGTATGACGTTCGCAAATCCAATTGGATGCGGTACGTTAATCCGGCGTATTCCTCAGAATCTCAGAACCTCATCGCCTGTCAGTACAAGATGAATATTTACTTCTACACCATCCGGCCCATCCTGCCCAACCAGGAGCTACTTGTGTGGTACTGCAAGGAATTCGCACAGAGGCTCAACTATCCACTCACTGGCGAACTCATGCTGCAAAGAATACGGCTTCAGGttcagcagcagcaacaacagcacaTCCCGCTGGCCATAGACGAGGTGGAGATGCGGGCCCCGGAGAAGAGGAAGGCCTCCGGGGACGTGGACGAGGACGGCCAGGGTGAGGCCGTGTCCAGGTCCCGGCCGTCGAGCGCCCCTGGCGCCGAGGACAAGGGAGGCGCCGTCCCGTCCTCCACGACGGCGTGCCTCCTCCTCCGTCGGCTCCCATCCCCGCCCGCCccgcccctcgccccctcccccgcttcctccGCCCTCATCTCCTCCACGCACGCAGCGTCCTCCACCACGCCCTCCGGCCCCCAGGACTGCCCCCGGATCTCGTCCTCATCCTCGGCCTGTCTCGCCTCGCCCCCCTCCGGGAAGGAGGGCTGCTCCCGGGGAGTCTCGCCGCCCCCCACGGCCGACGGGTCCGTGAGGTCGGACGAAGGCTACCACAGCAACGGGTACCACGACGACGCTGCCGCCTTCACGCCCCCGGAGGACTCGAGCGACTCCGACTCGGATAACAACTACGTCCTGGACTTCAGCAAGAAGCAACCCCCGGAGAGGCCAGGCGCGGTTGCCGCCACCATGGTGGCCTCCGTCCccgaggagatggaggaggacgaggaggacgcCAGCGAGGCTGCCAAGAACGAGTACCGAAAGGTCAAGATCAAGATCTGCAAGGCCTACCACTACAAGAGCAAGTCCTCGGCAGTGGCAGACGCCGGCGGCGCCAACGGCATCGGCGCCGCACCCGGCGTCCCCGTCAGTGCCCCCACTGCCTCGAGCGTCGCGGACAGGGACGGCGGGGAGCCCCAGGGGCCGCCCGCCCCCGGCTCAACCCCCCTGCTCCTCCATCATCAACTCCTGCACGGCAGCCCCCCCACGCTACACCTCCACCACACAcacctgcaccaccaccacctcctgctcccacccccgccgcccccgacGTCCTCTGCCTCCAGCGGGGCGCCCAACCCACCCACCTCCACGATGTCCGAGtccccacccccgcactcccTGCTCCACCCCCAGGGGCCCCCTCCTCCGCAGCCCCCGCCCCACCACGTCCTGGCGCCCCTCCGGGACGGGTCCGCCTCGCCCCCGCGGCGGGCTTCCCCGCCCACCACGACCACGGTCGTGATCCCCTCTCACCCATCTCCGCCGCCGCAGACCCAGCCTCCAATGTTCCGGCCCTTCTCAGTCTCCAAGGCCGAGTACATCAAGTCCGAGTTCGTCAAGAGCGAGTACGCCTCTAAGGCGGACTACTCCCAGGACATCGAGGAGGATGGCAAGGGCTCAGACGGCCGGGGGAAGTTCCCCGGGGGCAACAGTATCCTGGAGAACATCCTCCTGAGGAAGAGGGATCACGAGCAGACACCTCCCGCGCCCGCCAAGAGACCATCCGAGTGCCCGGCGCCCACCTCCCCCACGGAGATGGCCTACTCCTACAAGAAGTCCCACCGCTACGTGGCCCTCCCGAGCCCTGACTCGAGCTCCAACTCGGTCGCCCAGGGCGGCAGGGGCCCCTCGCCCCCTAGGCAGGTCGAGCACCACGAGGAGGAGAGGCCCCCGTCGCCGCAGCAGAGGCCGCCGCCTCCGCAGCAGCCGGCCCCGCTGCCCCCCGTGGTCGAGCTGGCTTACCTCTCCGCCTCGGCCGCATCCTCCACCTCGCCCACCGCCATCTTCTCGCACCACTTCGGCCCGTAcgccccgccgcctcccccgccgcctcctccgcccctctaCCATCACCTGCAGCACCACCACGtcctgcaccaccaccaccaggcGCCCTCGCTGGTCCCGTACCACCACCAGCCGCAGGTCCACCCTCCTCCGACCAGCTTCGCCTCTGTCGTCACCTCGGGCTCGCCGGTGGGCGCGAGGGTGGGCGATGGCGGCGGGGCGTACGGCGTCCCCCCGCCCCGCCACTCggtcacctcctcctcctcgtccctctcCACGCCCGTCTCCTCCGTGGCGCCGCCCATGTCCTcgtcccccccgccccacaccgTGCCCCTCTCCATCGGCGTGACGAGCAACGGCGGCGACTCGGGCAGCATCTCCCCGGGGTCGCTGTCTCCGGCGAGGTCGCTCAGCCCCGGCGGCAGCTCCGGCGGTCGCGGCTACAGGTCCCTGCCCTATCCTCTGAGGAAGAAGGACGGGAAGATGCACTACGAGTGCAACGTCTGCTTCAAGACGTTCGGTCAGCTGTCGAACCTCAAGGTCCACCTCAGGACCCACTCCGGGGAGCGGCCGTTCAGGTGCAACGTCTGCACGAAAAGCTTCACCCAATTGGCCCATCTCCAGAAACACCACCTCGTCCATACGGgcgAGAAACCACACCAGTGTGACATTTGCAAAAAGAGGTTTAGCAGTACATCCAACCTGAAGACTCACTTGAGGCTTCACTCGGGTCAAAAACCGTACGCCTGTGACCTCTGCCCTGCCAAGTTCACGCAGTTCGTGCACCTCAAACTGCACAAAAGGCTGCACACGAACGAGAGGCCATTTACTTGTCAAGGATGCCACAAGAAGTACATCAGTGCCAGCGGACTCAGAACACACTGGAAGACAACAAGCTGTAAGCCAAACAACTTAGAGGAGGAACTGGCTCTGGCGGCAGCTGCAGCAGCGGCGGCCTCTGGTTCGCCAAACAGCCACCTGTATTACGAGTACGCGTCGTCAGACGTCAGTGGAGGGAGCTTGGAAAAGGAGCTAGCGGAGGGCGGTGACTCCAGGGACTCCTTCGAGGGCAACCcgcaccaccatcaccaccaccagaGGCACCACCACCTacacctccaccacccccacctccagcacctcccctcctcctcctcgtcctcgtcctcctccacAGCCTCCTCGCCCACCTCCTCATGCCACGGACCCGGCCGGGGCCCCCCGGACCAGCCCCAGCCCTCCAGGCCCTCCGTCATCGAGACCTCGCAGCCGCACGTCATCGAGTGCACCTGA
Protein Sequence: MEEGPWDVSSICEEEFEQHVVYIVPDQPVPTSSTPASFPAPGSDPESRRRRRRRRRSSGGSRGRESPEKGNEADGGGGGDGGPKEEGDGGPEDDEDLEVDVGPLEDEEEDGVPSRAEASLPRNLVLRPSQALSDIQGVWSTSYIPRGTRFGPLVGEVYTKDGVPKTANRKYFWRVYKDNELFYYIDGYDVRKSNWMRYVNPAYSSESQNLIACQYKMNIYFYTIRPILPNQELLVWYCKEFAQRLNYPLTGELMLQRIRLQVQQQQQQHIPLAIDEVEMRAPEKRKASGDVDEDGQGEAVSRSRPSSAPGAEDKGGAVPSSTTACLLLRRLPSPPAPPLAPSPASSALISSTHAASSTTPSGPQDCPRISSSSSACLASPPSGKEGCSRGVSPPPTADGSVRSDEGYHSNGYHDDAAAFTPPEDSSDSDSDNNYVLDFSKKQPPERPGAVAATMVASVPEEMEEDEEDASEAAKNEYRKVKIKICKAYHYKSKSSAVADAGGANGIGAAPGVPVSAPTASSVADRDGGEPQGPPAPGSTPLLLHHQLLHGSPPTLHLHHTHLHHHHLLLPPPPPPTSSASSGAPNPPTSTMSESPPPHSLLHPQGPPPPQPPPHHVLAPLRDGSASPPRRASPPTTTTVVIPSHPSPPPQTQPPMFRPFSVSKAEYIKSEFVKSEYASKADYSQDIEEDGKGSDGRGKFPGGNSILENILLRKRDHEQTPPAPAKRPSECPAPTSPTEMAYSYKKSHRYVALPSPDSSSNSVAQGGRGPSPPRQVEHHEEERPPSPQQRPPPPQQPAPLPPVVELAYLSASAASSTSPTAIFSHHFGPYAPPPPPPPPPPLYHHLQHHHVLHHHHQAPSLVPYHHQPQVHPPPTSFASVVTSGSPVGARVGDGGGAYGVPPPRHSVTSSSSSLSTPVSSVAPPMSSSPPPHTVPLSIGVTSNGGDSGSISPGSLSPARSLSPGGSSGGRGYRSLPYPLRKKDGKMHYECNVCFKTFGQLSNLKVHLRTHSGERPFRCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPAKFTQFVHLKLHKRLHTNERPFTCQGCHKKYISASGLRTHWKTTSCKPNNLEEELALAAAAAAAASGSPNSHLYYEYASSDVSGGSLEKELAEGGDSRDSFEGNPHHHHHHQRHHHLHLHHPHLQHLPSSSSSSSSSTASSPTSSCHGPGRGPPDQPQPSRPSVIETSQPHVIECT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00307143;
90% Identity: iTF_00797349;
80% Identity: -