Cspl040153.1
Basic Information
- Insect
- Calopteryx splendens
- Gene Symbol
- Prdm15
- Assembly
- GCA_002093875.1
- Location
- LYUA01000479.1:482697-514153[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.11 75 6.7 1.6 2 23 238 260 237 260 0.92 2 15 0.00021 0.14 15.2 2.1 1 23 351 373 351 373 0.98 3 15 0.041 29 8.0 0.3 1 21 377 397 377 398 0.94 4 15 2.3e-05 0.016 18.2 0.3 1 23 406 428 406 428 0.97 5 15 0.04 28 8.0 1.8 1 20 432 451 432 453 0.94 6 15 0.0001 0.071 16.2 3.2 1 23 470 492 470 493 0.95 7 15 0.83 5.8e+02 3.9 0.4 1 20 501 520 501 522 0.91 8 15 0.71 5e+02 4.1 0.0 2 23 536 557 536 557 0.95 9 15 0.92 6.5e+02 3.7 4.3 1 15 561 575 561 581 0.84 10 15 0.0057 4 10.7 0.3 2 23 588 609 587 609 0.95 11 15 0.3 2.1e+02 5.3 3.3 1 19 614 632 614 632 0.97 12 15 0.0015 1 12.5 0.0 2 23 678 699 677 699 0.95 13 15 5.1e-05 0.036 17.1 3.0 1 23 704 726 704 726 0.98 14 15 4.4e-05 0.031 17.3 0.1 2 23 732 753 731 753 0.96 15 15 0.074 52 7.2 2.5 1 19 759 776 759 776 0.79
Sequence Information
- Coding Sequence
- ATGGCACTGGTGATAGAAGTGGTGGTCGGGGGAAACGAAGGGAGAAGATCCGACACGAAAACGAAGACTAAAGCCCGACTGACGCTACCAGAAAATTTAGAAGTGCAAACGTTGGCAGATGGATCACCCACTGTAATTGCTCGGGCTACGTTCGAACGAGGAACACAATTTGGACCGTTTCAAGCCAGACGTACCCCGGTGCTTCAGTTGTCAATAGATTTCCCATTGAAGGTGTTTGTTAAAGATTCGGAAGAAAGCTTTTACTTGGATACAAGTGATGAAGAATTTTGCAATTGGATGTGTTTAGTTGCTCCAGCTACATTAGCGAAGGAACAAAATCTCATGTGCTATCAGATGAAGCAAGATATTTACTATACAGTAATGAAAAGAATCCAACCTGGAGAGCAACTTAAAGTGTGGGAGATAGATGCTTTAACAGATCATGTGTATGGAACCccgaggaaagagaagaaagtgGTCCAAAACATGCTGCTGAACAAGGAAGTGACGGAGAAGATAGTGGAGAAGCTGGCACCCCAGCAGCTGGGTGCGAGGGGTgagaatgcagagaaaaaatgGCGCTGTCGCCTGTGTGGAGAGGAGGTggtgaaggagggtgggggagggggcagtggggTGGCAACTTTTGCCAAGCACCTGATGGCGCACTACCGGCCTCGGCTGGGCCGTAGTTCGGCACTAAAGTCATGGCCGTGCCACATCTGCCTCCAGAACTTCCGTGGGGAGAAGGAGCTGCTACACCACAAGGTGAAGGAGCACAAGGTGGCAATTAGGCGACCCCGGCTGTTGGGGCCCCAAGGGAGGGAATCAGGAGCCTCAAGTGAAAAAGGCCCAAGGATGGGGCCACCTGAGGGGGAAAGTGCAGCCGAGGAAGGACTTGAGTGGCAGCAGGAAGGGAGCAAGACGACGAGCATAGTGATTGCAAGGATACCCGAAGGACAAGAGAGTGTGATGATCAAGGATGCTGGGTGTGTGACAATATCGGTGAAGCCAGAGGTGGCAGTGAGTGGGGTGGAGTTGGGGCCACCTTACATCTGTGACATTTGCAGTAAGGAATTTCACCGTGCCGAGTACGTGTACCGCCACCTGCGCAAGCACACTGGGGAGTTCACTTGCGTCTCTTGCATGGCGGTGTTTGCACGCAAGGAGAGCCTTCAGACTCATATCTGCGTGGGAGGTGTTGCGTCGAATCTGTATACCTGCATTTACTGCCCCAAAGTGTTCTCAGTGCCTAAGCTCTTGAAGAGGCACATTGCCAAGCACAAAAGTGAGTTCATGTGCCAACTCTGTAAGCATGTTTATGCAACCAAGGCATCATTGGATGCTCACCACTGTGCAAGGGATGATGAAGAGAGAATCTCTGCTGGTGGCACAAAGACCAAGAGCTACAACTGTGCCCTGTGTGGTAAGGGCTTTGTCAACCAGAATTACCTGCGCAATCACTTGTCCCACCACCATCCCAATGATGAACATTTGGGTTTCAACTGCCAGTTCTGTGAGAAGGGCTTCCTCTTATCAGAATCCCTTGAGGAACACCAGTCTTTCTGCAAGCAGgTAAAGCAGTTGGAGAATGGCCAGAAGGCAACCTGTCCAATATGCGAGTCTGTTTCTGATGATGTGGTTGCCTTCAGGAGCCATGTGAGGGACCACTCACACCCATTCTTCTGTCAGCATTGTGGTGCTCGTTTTAAAACTCGAAAAACATCAGTCAGCCACACATGTGACCTTGACAGCTGCCTCAAGTGTGAGGTGTGCAAGGAAGACTTCCCCACCCACCAGGCACTCCTTGTCCATCTTGACCAGCATGGTGCTGCAACGTTTCATTGCTTTGAGTGCAGTGTCAGCTTCTTCCAGAGTGAGTCATTTGAGAAGCATGACTGCAGCAGTTGCCGGGAATCACGAGGCGATTACAAGGCAAGGAAGCGGAAAGGCaaggagggtgtggggagaggaggggcagGCCCTGGAGACGGCAGTGGAGGCAGCAATGGTGTTGGTGGCAGTAGCCTCATCTGCGAAGTTTGCGGGGCACAATACAAGACTGTGTACAGCCTCAGAGCCCACGTCCAACTTCACGGGGAAAGGCGCTTTGAATGCGACATCTGCCACAAGCGTTTCCATCGAAAGGATGTACTACAGGAGCACATATCAGTACACCAAGATCCTCAGATCCCGTGTCCTGTGTGCGAGAAGAAGGTGAAGACCAAGAAGTCTCTTGAAGTACACATGCTGCTGCACAGTGGTGAACGGAGGTACAAATGTGATGAGTGTGGGAAGAGCCTCCGTCGACACTTGGTGTGCAGACACCCAGAGTTGCGCTCAGAGTGGGACAGCACAGGTGCCCTGGACGTAATGCTCGTAACGAGGATGTCGGGAGAGGAGGTGGGCAGAGCAGTTGAGGGAATGGAGGCAGCATCTGGTGCCAGCGATAGTGGAGGTGCTTCGTTTGTCATTCAAACGAGAGAGACAACTGTTGACATGGCTGAAAGTGCAGAGATTCTGTTGACTGTGGCTGCAGGAGGACTGCACtctggggagggggtggtgggagcaCCATTGGTGGAGGGGGAGGTACCCCTGGCGATTGAGGGATCCCAGGAGAGTGGCAGCAGTGTGGTTGTGGGGGAGGACAGCGATCTCTCATGTCTCAAGGCCATGACCTCTGCAGAAGTGATGGCTCAAGTAACCCCTGGAGACGAGGTGCCCCTTACGGGTCATACATTCATCCTTGAGGATGGAACAATAATCCAGCAGGATGGTGGTCACCAAGCAGAAATCCTCCTCTGTGTCCTTGGGGGTGAAATCCAGACAGCTGACCTCAGTTTGGTGTAG
- Protein Sequence
- MALVIEVVVGGNEGRRSDTKTKTKARLTLPENLEVQTLADGSPTVIARATFERGTQFGPFQARRTPVLQLSIDFPLKVFVKDSEESFYLDTSDEEFCNWMCLVAPATLAKEQNLMCYQMKQDIYYTVMKRIQPGEQLKVWEIDALTDHVYGTPRKEKKVVQNMLLNKEVTEKIVEKLAPQQLGARGENAEKKWRCRLCGEEVVKEGGGGGSGVATFAKHLMAHYRPRLGRSSALKSWPCHICLQNFRGEKELLHHKVKEHKVAIRRPRLLGPQGRESGASSEKGPRMGPPEGESAAEEGLEWQQEGSKTTSIVIARIPEGQESVMIKDAGCVTISVKPEVAVSGVELGPPYICDICSKEFHRAEYVYRHLRKHTGEFTCVSCMAVFARKESLQTHICVGGVASNLYTCIYCPKVFSVPKLLKRHIAKHKSEFMCQLCKHVYATKASLDAHHCARDDEERISAGGTKTKSYNCALCGKGFVNQNYLRNHLSHHHPNDEHLGFNCQFCEKGFLLSESLEEHQSFCKQVKQLENGQKATCPICESVSDDVVAFRSHVRDHSHPFFCQHCGARFKTRKTSVSHTCDLDSCLKCEVCKEDFPTHQALLVHLDQHGAATFHCFECSVSFFQSESFEKHDCSSCRESRGDYKARKRKGKEGVGRGGAGPGDGSGGSNGVGGSSLICEVCGAQYKTVYSLRAHVQLHGERRFECDICHKRFHRKDVLQEHISVHQDPQIPCPVCEKKVKTKKSLEVHMLLHSGERRYKCDECGKSLRRHLVCRHPELRSEWDSTGALDVMLVTRMSGEEVGRAVEGMEAASGASDSGGASFVIQTRETTVDMAESAEILLTVAAGGLHSGEGVVGAPLVEGEVPLAIEGSQESGSSVVVGEDSDLSCLKAMTSAEVMAQVTPGDEVPLTGHTFILEDGTIIQQDGGHQAEILLCVLGGEIQTADLSLV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -