Cspl104333.1
Basic Information
- Insect
- Calopteryx splendens
- Gene Symbol
- -
- Assembly
- GCA_002093875.1
- Location
- LYUA01003797.1:51219-62496[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.2e-07 0.00057 22.8 2.2 1 23 210 232 210 232 0.99 2 10 5.7e-05 0.04 17.0 3.9 1 23 238 260 238 260 0.98 3 10 7.5e-06 0.0053 19.8 0.8 1 23 266 288 266 288 0.97 4 10 3.3 2.3e+03 2.0 1.6 3 23 305 324 305 324 0.92 5 10 0.00011 0.076 16.1 0.1 3 23 330 350 328 350 0.96 6 10 0.077 54 7.1 0.7 1 10 356 365 356 369 0.92 7 10 3.3 2.3e+03 2.0 0.1 15 23 376 384 374 384 0.91 8 10 0.00055 0.39 13.9 2.0 1 23 390 412 390 412 0.98 9 10 3.1e-07 0.00022 24.1 2.1 2 23 419 440 418 440 0.97 10 10 0.26 1.8e+02 5.5 4.4 1 21 447 467 447 471 0.89
Sequence Information
- Coding Sequence
- ATGTTCGATATATCCATACGATATGATGTGAGTTTGTCGCTGGCCTGGTACATGGGGGAAGGAGATGAAGGTCAAGACGGTGGAGCTGGGGACTGTGGGGGAGGGCTGGGGATTGTGTTGAAGTGTTCAgttggagagggaaaggaagcaTCACAGGGGTGGGGTGAGGAGAGTTTCAAGACTGAGCCAGGAGGTGGCAGCAGCAGTAACATCGTCCCCGTGGGGCTCGTCAAGTGTCCGAGGGAAGAGGCGACGTCGACGGAGGAGGCTTCCTTCCTTCGCATCTCGGAGAGGGTTTCCGCGGTCGTCTCGCAGGAGGGTTCCGGCACGGATGTGCCATCTTTGCGGACCGAGACCGTCTTGCCGAACGATCTGGAGGATTATCAGGTCGGTGGGgcgAGACCGGGTTTTCGTCGTCTCGAGATGACTTTCGTGCCCAAGCACAGGTCGTCGACCCCGCACGACCCCTCTTTCCACGAGGGCCGACGTGAGGGCTTCGTCATCAAACGGATCTACAACGGGACGACCGAAGAGGAGGCCTCCCTCGGAAGGCCCCCGGATGGTCCGAAGGACCCGGGCAGCTTCCCGTACATGGGACGGGGTCACGACAAGTCGTCCCGGGCGGGTTACAAGTGCCCCCACTGCGGCAAGTCCATCTCCCGACGGTTCGACTTCGAGAGCCACCTCCGGATCCACTCCGGCATCAAACCGTTCGAGTGCCACATCTGCCACGCGACCTTCAACCTCAAGAAGCGACTCAAGGCCCACATGAACGTCCACAGCGCGATGAAGCTGTTCATATGCGCGTACTGCCAGCGCAAGTTCAAGAGCAAGGACGCCCTGAGGCTCCACATCTACGTCCACGTGGGGGAGAGGCTGCCCGAGAGGCCCTCGAAGCCGTCGGAGGTGTGGTGCGGCGTCTGCGGCGTGAGCGTCCTCGAGAGCTGCCTCTCGTACCACATGCACACTCACACAAGGGACCTGGACTGCGGGGTGTGCGGGGAGATGTGCCGCGATGCCGAGGACCTCGCGGCACACAAGCGGGTCCACGACCACGAGAAGAGGTTCCAGTGCACCAAGTGTGGGAAGCGGTACGGACTGAAGGTGAGCCGTGGTGGCGTCGGCAACCTCGCCCAGCACATGATGATCCACACCAACGACAAGCGCTTCGAGTGCCAGACGTGCAGCAGACGGTTCTACACGGGTTCGAGGCTCCGTCGGCACGAGCAGGTCCACTCGTCGGAGCGGAACGTCGTCTGCTCGGTGTGCGGGAGGGCGTTCAAGACGAAGCACTACCTGCGCCAGCACCTCAAGACTCACCAAGGGGGTGAGGCACCACACAAGTGCCTGACCTGCGGACAGAGGTACAAGTGGCAGGGCGACCTCAGGAAGCACTGTCGGGTGAAGAACCATCAGAATTGA
- Protein Sequence
- MFDISIRYDVSLSLAWYMGEGDEGQDGGAGDCGGGLGIVLKCSVGEGKEASQGWGEESFKTEPGGGSSSNIVPVGLVKCPREEATSTEEASFLRISERVSAVVSQEGSGTDVPSLRTETVLPNDLEDYQVGGARPGFRRLEMTFVPKHRSSTPHDPSFHEGRREGFVIKRIYNGTTEEEASLGRPPDGPKDPGSFPYMGRGHDKSSRAGYKCPHCGKSISRRFDFESHLRIHSGIKPFECHICHATFNLKKRLKAHMNVHSAMKLFICAYCQRKFKSKDALRLHIYVHVGERLPERPSKPSEVWCGVCGVSVLESCLSYHMHTHTRDLDCGVCGEMCRDAEDLAAHKRVHDHEKRFQCTKCGKRYGLKVSRGGVGNLAQHMMIHTNDKRFECQTCSRRFYTGSRLRRHEQVHSSERNVVCSVCGRAFKTKHYLRQHLKTHQGGEAPHKCLTCGQRYKWQGDLRKHCRVKNHQN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -