Cspl110314.1
Basic Information
- Insect
- Calopteryx splendens
- Gene Symbol
- -
- Assembly
- GCA_002093875.1
- Location
- LYUA01004913.1:30839-36670[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.5e-06 0.0031 20.5 0.6 3 23 48 68 46 68 0.98 2 11 3.9e-07 0.00028 23.8 0.8 1 23 74 96 74 96 0.98 3 11 2.4e-07 0.00016 24.5 2.9 1 23 102 125 102 125 0.98 4 11 3.7e-06 0.0026 20.7 0.0 1 23 133 156 133 156 0.98 5 11 5.8e-05 0.04 17.0 0.0 1 21 157 177 157 181 0.90 6 11 2.6e-06 0.0018 21.2 0.2 2 23 187 208 186 208 0.96 7 11 7.1e-06 0.0049 19.8 0.7 1 23 214 236 214 236 0.98 8 11 2.5e-06 0.0018 21.2 2.1 1 23 242 264 242 264 0.98 9 11 9e-07 0.00063 22.6 3.9 1 23 271 293 271 293 0.99 10 11 7.5e-06 0.0053 19.8 0.5 1 23 300 322 300 322 0.98 11 11 1.1e-07 7.7e-05 25.5 1.3 1 23 328 351 328 351 0.95
Sequence Information
- Coding Sequence
- ATGGTCAGCGGGAAGGCTCGGCCCCTGACGTGGGGGGAGGACGTGTCCATAACTGGTCGGGACGGGGTGGTCACGCTGGCCGAGATGGTGGATGCCTCGGGACTGCTGATGGCGCCAGGCGATGAGGCCAAGCCGTTCGGTTGCGGCATTTGCAGCAAGAGGTTCGCTCGGAGCAACAAGCTGGTCCAGCACATACGGACACACACTGGGGAGCGGCCTTTCGTTTGCGAGGTTTGTGGCCGGGCGTTCAACCGCAAGGACAAGCTCTCCCTCCACCGCAAGACGCACAACTCGGACAAGCCGTACCAGTGTCCCACGTGCGGCAAGGCCTTCTGCCGTAGCGACTACCTCCTACAGCACCGCAAGTCCAACCACCCGGACGAGGAGATCCCTCACTTCCCGTGCACCGAGTGCGGTGCTGCGTTCGCCAAGGAGAAGGACCTCACGGCGCACGTGAGGACGGCCCACTACTCCTGTGCCGACTGCGGCCGGGTGTTCCCTACGGAGGCCGACCTGGTGGCCCACGCATCGTCTGTGGCGCACACTGGCGCTCATCTCGAGTGCGTGGATTGCGGGAAGGTGTTCGAGGACCGGGAGAAGCTGAGGAAGCACGGGAAGGTGCACCGGAGGGACTCCGCCTACTCCTGCGAGTGGTGCGGGAAGGTCTTCTACCGGATGGACAAGATGCTCCAGCACCGCAGGGTCCACACGAAGGAGCGACCGTACCACTGCGACCTGTGCGGGAAAGGGTTCTCCCGCAGCGACAAGATGACGGAGCACCGGCGCATACACAACACGAGCGTGAAGCCTTACGAGTGCGCCGAGTGCCACAAGAGGTTCACGCGGAGCGACTACCTCCTCCAGCACCGGAAGACGCACGTGGAGGATGCGAGGAAGTTCAAGTGCGAGACGTGCAACAAGGGTTTCGTGTCGAACAAGGATTTGGTGGTGCACAGGGGGACGCACTCGCTCGACAGGCCGTTCAAGTGCGAGGAGTGCGGCAAGACGTTCAAGCGCAAGGGCGCCCTCAACTCGCACAAGAAGGGGACGCACCTGAGGGCGGAGGCGCAGCTGTTGGACGTCGGGGGAGTGGTTCCGTGGGCCCCGCTGAAGGATGAGTTGGTGCTGGGTTCGTACCTGCAGGCGCCGTTTGCGTGA
- Protein Sequence
- MVSGKARPLTWGEDVSITGRDGVVTLAEMVDASGLLMAPGDEAKPFGCGICSKRFARSNKLVQHIRTHTGERPFVCEVCGRAFNRKDKLSLHRKTHNSDKPYQCPTCGKAFCRSDYLLQHRKSNHPDEEIPHFPCTECGAAFAKEKDLTAHVRTAHYSCADCGRVFPTEADLVAHASSVAHTGAHLECVDCGKVFEDREKLRKHGKVHRRDSAYSCEWCGKVFYRMDKMLQHRRVHTKERPYHCDLCGKGFSRSDKMTEHRRIHNTSVKPYECAECHKRFTRSDYLLQHRKTHVEDARKFKCETCNKGFVSNKDLVVHRGTHSLDRPFKCEECGKTFKRKGALNSHKKGTHLRAEAQLLDVGGVVPWAPLKDELVLGSYLQAPFA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00797271;
- 90% Identity
- iTF_00797271;
- 80% Identity
- -