Basic Information

Gene Symbol
Arid5a
Assembly
GCA_002093875.1
Location
LYUA01000275.1:241815-255098[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3e-27 8.9e-23 83.1 0.0 2 89 53 138 52 138 0.95

Sequence Information

Coding Sequence
ATGGGATCCGCTCAGGACGAAGACTGGTGCCACCACCTCGAGGGAGGCGACGGCGTCCCGGAGCGTCCACCATCTTCCTCGTCAGCATCATCATCACCTCCTCCACACAACCACACAAACCCATCATCACCAGACACAGTTGTTCGCACGGAAGAAGAAAGACGCTTCCTTAGTCATTTGCACACTTTCATGAAGCATCGGGGTTCTCCAATTGAGCGCCTTCCTCATCTTGGTTTTAAGAAGAttgatCTATATGAATTTTATGGCAAAGTACAAAGTTCCGGTGGATATGAGAAAGTTACAGGACGTAAATTATGGAAGCATATTTATGACGAGTTAGGTGGCCACCAAGGAAACACAAGTGCTGCAACCTGCACTCGTCGTCATTATGAAAGGTTACTTCTTCCATATGAGCGAAAGCAGCGAGGACAAGAAGACAAACCACCTCCAGCCCTGCACCGAAGGCATGGCAAGGTACCTGGTGGTTCAGGTGATGTAGATGCAGGAGATACTAGCAATGAAGGCAGCTCAAGCACTGAAGGACCACCTCCATCCAGAGGGCATCATCGTAAGTTGGAATCCGAGAATGGGGATGGAAGAGACCAACACCGGAGGCCATCTTCAGTTCATGGATCAAGTGGAAGGGGCTATCTCGGAGATGATTCAGGGATCTCTGTGGTTGGCTCAGTTATGGTTACTAGTCCGGGTATAAATTCCGGTGGTGCAGCGGCAGTGCCACGGGACAAGGAGAGCATTGTCCCCCGACCCAATGGGGGCTTAAGGTTGGAGGGAAGAGATGGAGCTGTGCCACCACCTCCTGAACTTGTGCCATTACCCAAGACTGGCCATGCAGCTCTGCGGGATCTTGCAAGGAGAGCATCACCTGCAGGTCACACAGTTCCATCTTCGCATCTGTATCCTATAACCATGCCAACTAGAACAGCGTCATATGCAGCTGCCACCTCACTGAAGATCCCAGTGGTCCCATCTCTTAAGAGACGAAAATTAGAAATCCTACGGGAAGGAGGATTAGAAGTTACCCCAATTCCTGCTCCAgcattcccccctccaccctctatTCCATCAAGAAGTTCTACTGGCCGTCCGTCAGTAATACATCATGCATCACCACCATCTCCACATGTGCCAACCAGGGACGGTATTAATATGCCTTCTTCACAAGTTTCCATTACAGTCACCCCAGATCTAAACCACATAATTGGAAATTCTGACAGCATGATGAGAAGTATAGCTACATTGCATGCTGGGCAGCGCATCTCACAGGAAAGTGGTCCATCACCGACAGGTCTCCCTCGTGTAACTCAGTCCCGTTCAATATATGCACGTTCAGAAACAGTTTATGGAAATCCTCAGGAAGGTTTGCATCTCTCGCATAGGACATGCCTACCTGTAAACCCAGGACCTTCTGGTATAGAGGTGCTTGACCTCAGGACAAAAGCCCGGCCTGGATCACCTCAAAATACCCCAACTACTGTTGtttcagatgatgatgatgtggttGAAATTGATAGGGTGTGTGGACCAGATCCTGCCAGACCATCAGATGTAAGGAGGCGTAGGCCTCGAGGCGTGGGTTCAGGCTTGGAGATAACAATAGTGGAGGGAAATGATAACCATTCTGAATCAAGGGGTGCAAGGCGGCCTACACCAGGGCGGCGGAAATCTGATGATGTCCCCAATGGGGCTCATGCAGGACTTGTTGTTCCCATTCCAGGGAGATCAGGAGGAGGTGGTGCTATTCATGGCATACATGCATCTTCTCCCCTTTTTGTTAACTATCCTTCGTTGAGTGGGAGCCGGCCTCCTTCTTCTGAGTCAGCTACTCCGCATCCTAGCCTTTACGTGCCTATCCTTGACCCAGCTGCCTTTTGCTCAGCCCTCTATGGGGGAGGATCTGGCATTCAAACATCATCATCCCTGCCTGTCCCTACATCCATCCATCGTTCACACTTTGCTTCTTCTCACCTAAATCCTCAAGTTTCCTTGCCCTCATCCTCATCCCAGCTCCGTCCGTCTGCCTCAGTGACTCAGAGGCAGATGCAGATGTACAAAGAGGTTTTTGTCGGAAGTGGCATGAATGGTATAGTCCCCTCACTTTCTGCTGCTGGATTTGGGAGTCGGTCAGTGGCAGGACTTGGTGGTGATGGGTCCGCCCCCAGGAAAAGTACTCGAGCGCGTCGGAGACTTGTATCATCTCTTTTCCTCCGTCACGATTCGTCCAGCCATGAACTTCGGTGGGAATACGACGGATACGAGAGGCAATGTAGCTTTACGCTCGTTGCAGGGCCATCGGTACGTCTGCATGCGTGCCCACAGCCGGCCGACCTGCCGCTGCTGccacctctcccactccctcccccccttcgaccCCAACGCGGTGCCCTCCACGCAACGTTTGGCACCGCCGCTCGGAACCAAgacgagggagagagtgaggaagagtCAGGGTGTACCGAATCTCCACGCTCGCTTGGGGGAAGCGTCACCGTTCAATTACATTGTGCCCGTAATGATAGTCCCACGACCGGAGGAGGGGGCAAAGAAGGGGCGTCGAGGCGGTTGAGGGAGAGCGGGGCCATGCTTGGGGCTGAGGATAGAGCCGGGAAAGTTGTCGCCTGCCACCACATCCGTAGAAAGAGGATGAGTGGCGAGACGGCCGCGCCTCCGCTCTCGCCTCAGTCCGCTGATCGCAACGCGGCGCTGTAA
Protein Sequence
MGSAQDEDWCHHLEGGDGVPERPPSSSSASSSPPPHNHTNPSSPDTVVRTEEERRFLSHLHTFMKHRGSPIERLPHLGFKKIDLYEFYGKVQSSGGYEKVTGRKLWKHIYDELGGHQGNTSAATCTRRHYERLLLPYERKQRGQEDKPPPALHRRHGKVPGGSGDVDAGDTSNEGSSSTEGPPPSRGHHRKLESENGDGRDQHRRPSSVHGSSGRGYLGDDSGISVVGSVMVTSPGINSGGAAAVPRDKESIVPRPNGGLRLEGRDGAVPPPPELVPLPKTGHAALRDLARRASPAGHTVPSSHLYPITMPTRTASYAAATSLKIPVVPSLKRRKLEILREGGLEVTPIPAPAFPPPPSIPSRSSTGRPSVIHHASPPSPHVPTRDGINMPSSQVSITVTPDLNHIIGNSDSMMRSIATLHAGQRISQESGPSPTGLPRVTQSRSIYARSETVYGNPQEGLHLSHRTCLPVNPGPSGIEVLDLRTKARPGSPQNTPTTVVSDDDDVVEIDRVCGPDPARPSDVRRRRPRGVGSGLEITIVEGNDNHSESRGARRPTPGRRKSDDVPNGAHAGLVVPIPGRSGGGGAIHGIHASSPLFVNYPSLSGSRPPSSESATPHPSLYVPILDPAAFCSALYGGGSGIQTSSSLPVPTSIHRSHFASSHLNPQVSLPSSSSQLRPSASVTQRQMQMYKEVFVGSGMNGIVPSLSAAGFGSRSVAGLGGDGSAPRKSTRARRRLVSSLFLRHDSSSHELRWEYDGYERQCSFTLVAGPSVRLHACPQPADLPLLPPLPLPPPLRPQRGALHATFGTAARNQDEGESEEESGCTESPRSLGGSVTVQLHCARNDSPTTGGGGKEGASRRLRESGAMLGAEDRAGKVVACHHIRRKRMSGETAAPPLSPQSADRNAAL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-