Cmac012832.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- znf711
- Assembly
- GCA_900659725.1
- Location
- CAACVG010009314.1:227817-282735[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.014 0.96 10.1 0.8 2 23 181 203 180 203 0.94 2 19 0.0072 0.51 11.0 7.4 1 23 215 237 215 237 0.97 3 19 0.026 1.9 9.2 1.1 1 23 247 270 247 270 0.94 4 19 0.016 1.1 10.0 1.1 1 23 314 337 314 337 0.95 5 19 0.78 55 4.6 1.3 2 23 382 404 381 404 0.95 6 19 0.014 1 10.1 3.1 1 23 416 438 416 438 0.97 7 19 0.38 27 5.6 1.1 3 23 450 471 448 471 0.91 8 19 0.17 12 6.7 5.9 1 23 483 505 483 505 0.97 9 19 0.016 1.1 10.0 1.1 1 23 515 538 515 538 0.95 10 19 0.78 55 4.6 1.3 2 23 583 605 582 605 0.95 11 19 0.059 4.2 8.1 2.5 1 23 617 639 617 639 0.97 12 19 0.02 1.4 9.7 6.4 1 23 684 706 684 706 0.97 13 19 0.037 2.6 8.8 1.3 3 23 718 739 716 739 0.92 14 19 0.0049 0.35 11.5 4.9 1 23 751 773 751 773 0.97 15 19 0.074 5.2 7.8 1.0 3 23 785 806 783 806 0.91 16 19 0.0016 0.11 13.1 1.1 1 23 818 840 818 840 0.97 17 19 0.00062 0.044 14.4 3.3 2 23 851 873 851 873 0.96 18 19 0.021 1.5 9.5 8.2 1 23 885 907 885 907 0.97 19 19 2.9 2e+02 2.8 0.8 3 23 919 940 918 940 0.91
Sequence Information
- Coding Sequence
- ATGCAAGTTACTAAAGCTGAGTTGGGAGAGGATGTGAACTATGAAGAACTCAAAATTGAGTGCGAGGAGTTGATCAATAAAgatgaaaatgatgatttaaatgatGCAAATGGAGAAGTAGATGCCGATAGAATTAAAAAAGAGCAGGTTGTTAAAGTTTGGAAAAATGATCTTGAGATGGAAGATACTAAAGTTAAATTGGAGGAGGATGTGAACTATGAAGAAGTCAAAATTGAGTCTAAGGAGCTGATCATTAAAgtcgaaaatgatgatttaaatgatGCCAATGTGGAAATAGATGTGGATAGAAGTAAAGAAGGGCGTATTGTccaaaattggaaaaatgatcTAGAGATGCAAGTTATTAAAGCTGAGTTGGGGGAGGATGTGAACTATGAAGAATTCAAAATTGAGTCTGAGGAGTTGATCATTAAAgacgaaaatgatgatttaaatgatGCCAGTGGGGAAATAGATGTGGATAGATCTCTAGCAATCCCCTGCGGGCAAAATCAACACCTCAAGACAGCAGATAAGCTGACGTGCACACAGTGTAATACAGCATACAAACGTAAATTAAGCCTAGATGACCATATAGTCAGGAAACATCCGCATTTGATTGCTTCTGTATCTAGTAAAATACATGAATGTACGCATTGCTCATTTAAAACTGTTAGGAAAGCCCATTTAGTTCGTCATATGTCAAAACACCGAGAAAGAGCAGATagatacaatttttacaggtgTATTCATTGTAATATTACTTTCTCAAGTAAACAAGCTCTTGATGGCCATATACTCAACAAACATCCTGATGCTATGGGATCCATTTCTACTAAAACGCATGAATGTATGCATTGCGCATTCAAAACTGTTTGGAAACCCCATTTAGCTCGTCATATGTCAAAACACCGAGAAAGAGCAGCTagatacaatttttacaggtgTATTCATTGTAATATTACTTTCTCAAGTAAACAAGCTCTTGATGGCCATATACTCAGCAAACATCCTGATGCTATTGGATCCATTTCTACTAAAACGCATGAATGTATGCATTGCGCATTCAAAACTGTTTGGAAAGCCCATTTAGCTCATCATATGTCAAAACACCGAGAAACAGCAGATAGATACAATTTTAGCACTTGTGTTCACTGTAATGCTATTCTCAAAAGTAAGCGAGCTCTTGATGACCATACGCTCAGAAAGCATCCTGATTCCATGGAATCCATTTCTACTAAAACACATGAATGTATGCATTGCGCATTTAAAACTGTTAGGAAAGCCGATTTAGCTCGTCATATGTCAAAACACCGAGAAAGAGCAGATAGATTCAGTTTTAGCACGTGTATTCACTGTAATGTTACTTTCTCAAGCAAACAAGCTTTTGATGGACATATACTTAGCAATCATCCTGATGCTATTGGAtccatttctactaaaatacatGAATGTACGCATTGTTCATTTAAAACTGTTATCAAACCCCATTTAGCTCGTCATATGTCAAAACACCGAGAAAGAGCAGCTagatacaatttttacaggtgTATTCATTGTAATATTACTTTCTCAAGTAAACAAGCTCTTGATGGCCATATACTCAGCAAACATCCTGATGCTATTGGATCCATTTCTACTAAAACGCATGAATGTATGCATTGCGCATTCAAAACTGTTTGGAAAGCCCATTTAGCTCATCATATGTCAAAACACCGAGAAACAGCAGATAGATACAATTTTAGCACTTGTGTTCACTGTAATGCTATTCTCAAAAGTAAGCGAGCTCTTGATGACCATACGCTCAGAAAGCATCCTGATTCCATGGAAtccatttctactaaaatacatGAATGTATGCATTGCGCATTTAAAACTGTTAGGAAAGCCGATTTAGCTCTTCATATGTCAAAACACCCAGAAACAGTAGATAGATACAATTTTAGCACGTGTATTCACTCTAATGTTACTTTCTCAAGCAAACAAGCTTTTGATGGACATATACTTAGCAATCATCCTGATGCTATTGGAtccatttctactaaaatacatGAATGTACGCATTGCTCATTCAAAACTGTTAGGAAAGCCCATTTAGCTCTTCATATGTCAAAACACCCAGAAACAGCAGATACCTCAAAGTTTAGCACGTGTATTCACTGTAATATTACTTTCTCAAGTAAACAAGCTCTTGATGGACATATGCTCAGCAAACATCCTGATTCCATTGGATCCATTTCTAATAAAATACATGAATGTACGCATTGCTCATTTAAAACTGTTAAGAAAGGCGATTTAACGCGTCATATGTTAAACCACCCAGAAACAGCAGATGGATACAATTTTAGCACGTGTATTCACTGTAATATTACTTTCTCAAGTAAACAAGCCCTTGATGGACATATACTCAGCAAACATCCTGATGCTATTGGATCCCTTTCTTATAAAATACATGAATGTACGAATTGCTCATTTATAACTGTTAGGAAAGCCGATTTAGCTCGACATATGTTATACCACCCAGATACAGCAGATAGATACAATTTTAACACTTGTACTCACTGTAATGCTGCTTTTAGAAGTAAACGATCTCTTGATAACCATATGCTGAGAAAGCATCCTGATTCCATTGGAtccatttctactaaaatacatGAATGTAGGCATTGCTCATTTAAAACTGTTAGCAAAGCGCATTTAACTCGTCATATGTCAAAACACCGAGAAAGAGCAGATAGATACAATTTTAGCATGTGTATTCACTGTAATATTACTCTCTCAAGTAAACAAGCTCTTGATGGACATATACTCAGAAAACATCCTGATGCTATTGGAtccatttctactaaaatatatgaatgtgcGCATTGTATGTACAAAACAATTGCGAAGTGTAAATTTGATAGACATATGTTGAAACACCCTTGA
- Protein Sequence
- MQVTKAELGEDVNYEELKIECEELINKDENDDLNDANGEVDADRIKKEQVVKVWKNDLEMEDTKVKLEEDVNYEEVKIESKELIIKVENDDLNDANVEIDVDRSKEGRIVQNWKNDLEMQVIKAELGEDVNYEEFKIESEELIIKDENDDLNDASGEIDVDRSLAIPCGQNQHLKTADKLTCTQCNTAYKRKLSLDDHIVRKHPHLIASVSSKIHECTHCSFKTVRKAHLVRHMSKHRERADRYNFYRCIHCNITFSSKQALDGHILNKHPDAMGSISTKTHECMHCAFKTVWKPHLARHMSKHRERAARYNFYRCIHCNITFSSKQALDGHILSKHPDAIGSISTKTHECMHCAFKTVWKAHLAHHMSKHRETADRYNFSTCVHCNAILKSKRALDDHTLRKHPDSMESISTKTHECMHCAFKTVRKADLARHMSKHRERADRFSFSTCIHCNVTFSSKQAFDGHILSNHPDAIGSISTKIHECTHCSFKTVIKPHLARHMSKHRERAARYNFYRCIHCNITFSSKQALDGHILSKHPDAIGSISTKTHECMHCAFKTVWKAHLAHHMSKHRETADRYNFSTCVHCNAILKSKRALDDHTLRKHPDSMESISTKIHECMHCAFKTVRKADLALHMSKHPETVDRYNFSTCIHSNVTFSSKQAFDGHILSNHPDAIGSISTKIHECTHCSFKTVRKAHLALHMSKHPETADTSKFSTCIHCNITFSSKQALDGHMLSKHPDSIGSISNKIHECTHCSFKTVKKGDLTRHMLNHPETADGYNFSTCIHCNITFSSKQALDGHILSKHPDAIGSLSYKIHECTNCSFITVRKADLARHMLYHPDTADRYNFNTCTHCNAAFRSKRSLDNHMLRKHPDSIGSISTKIHECRHCSFKTVSKAHLTRHMSKHRERADRYNFSMCIHCNITLSSKQALDGHILRKHPDAIGSISTKIYECAHCMYKTIAKCKFDRHMLKHP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -