Cmac005309.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Callosobruchus maculatus
Gene Symbol
-
Assembly
GCA_900659725.1
Location
CAACVG010006763.1:177619-184765[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.3 89 4.0 5.5 1 19 140 158 140 160 0.95
2 16 0.12 8.2 7.2 5.7 1 23 169 191 169 191 0.98
3 16 0.0017 0.12 13.0 3.9 1 23 200 222 200 222 0.99
4 16 7.7 5.4e+02 1.5 0.3 12 20 227 235 226 237 0.89
5 16 0.0017 0.12 13.0 3.9 1 23 257 279 257 279 0.99
6 16 0.25 18 6.2 0.3 12 23 284 295 283 295 0.94
7 16 0.041 2.9 8.7 6.1 1 23 304 327 304 327 0.95
8 16 1.1 77 4.1 5.1 1 23 336 358 336 358 0.97
9 16 0.0034 0.24 12.0 4.1 1 23 367 389 367 389 0.99
10 16 0.0047 0.33 11.6 8.6 1 23 398 420 398 421 0.96
11 16 0.0023 0.16 12.6 1.2 1 23 429 451 429 451 0.99
12 16 0.94 66 4.4 7.1 1 23 460 482 460 482 0.99
13 16 0.056 3.9 8.2 5.2 1 23 491 513 491 513 0.99
14 16 0.0013 0.091 13.4 3.8 1 23 522 544 522 544 0.99
15 16 0.0013 0.091 13.4 3.8 1 23 553 575 553 575 0.99
16 16 0.0013 0.091 13.4 3.8 1 23 584 606 584 606 0.99

Sequence Information

Coding Sequence
ATGTCCGAAATGAAAGAAACGGGTATTAGTGACATTATGGACAGAGAACCTGTTGAAGTCGCCGTGAAAATAACAGAAGATGCAGCTGACTGCATTGATAACAACAATTGTTGCTACTGTGCTGAAGAATTTGCCTCAGCAGAAATCAGAGACAAGCATGAAATACAGTGTCACATGGGTCCACAGCTAACAGTATGCTTATCAGTTATCAACATTCATGACACTGTCATTCGAAATTGTCCAGATGACGAGAGCAGGGAGACATCTAGCAACAAGTCCAGCAATCAGAAATGCCTGGATCAGCAGTTTCTGCAGAAGGTATCCAAACTTAAGCATGCAACATGTGCAACAAAAGATCGGGATGTGAAGCTCAAGAGGCATTCATCCACCAATGATGATGAAGCTGAGAAAATGCATTATAAGTGTGAACAATGTGGTTATGAAACGCATCGTAAATGGTGCTTCAATCAACATGAACATGATATTGAGGGCACTCTTAAAAACTTCAAGTGTAACCAATGTGATTATACATCACATTTTAAGAAATATTTAAGTACTCATAAATTGGTACATGATTTAGACAGAGTTAATAAGAAATATAAGTGCGAACAGTGTGATTATAAAACACATTCGAATGCTAGCTTAAAACAACATAAATTAACACATGATTCAGAAGGAAGGAAGTCCAATTTAAACAAACATCGACATTTTAAGAAATATTTAAGTACTCATAAATTGGTACATGATTTAGACAGAGTTAATAAGAAATATAAGTGCGAACAGTGTGATTATAAAACACATTCGAATGCTAGCTTAAAACAACATAAATTAACACATGATTCAGAAGGAAGGAAGTCCAATTTAAACAAACATCAGTTGGTACATGATGTTAAGGAAATTCATAAGAAGTACAAATGTGATCTGtgcgattacaaatccaattATAATCATTCATTAAAGCAGCATACATTATTATGTCATGCTCTAGAGAGACCTAATAAGAAGTACAAGTGTGAGCAATGTGATTATAAAACACATTTGAATGGTAGGTTAAAACAACATAAATATAAACATGACTCAGAAGGAATTTACAAGAATTACAAATGTGAACTGTGTGATTATAAAACGCATTTCAATGGTAACTTAAAACAACATAAATTAACACATGATTCCAAAGGAACCTACAAGAATTACAAGTGTGAACTGTGTCATTATAAAAGCCATTACAAGTCCAATTTAAACAAACATCAGTTGGTACATCATGTGAAGGAAATTTATAAGAAGTACAAATGTGATCTGTGTGATTTCAAATCCATTTATAAAGGTGGGTTAAAACAACATAAATTAACACATGATTCAGAAGGAGCTTACAAGAATTACAAATGTGAACTGTGTGACTACAAAACACATGCGAAATGTAAGTTAAAACAACATAAATTAACACACGATTCAGAAGGAACTTACAAGAATTACAAATGTGAACTGTGTAATTATAAAACGCATTTCAATGGTAAATTAAAACAACATAAATTAACACATGATTCCGAAGGAACCTACAAGAATTACAAGTGTGAACTGTGTGATTATAAAACACATTATAATGGTGACTTAAAACGACATAAGTTGACACATGATTCCGAAGGAACCTACAAGAATTACAAGTGTGAACTGTGTGATTATAAAACACATTATAATGGTGACTTAAAACGACATAAATTGACACATGATTCCGAAGGAACCTACAAGAATTACAAGTGTGAACTGTGTGATTATAAAACACATTATAATGGTGACTTAAAACGACATAAATTGACACATGATTCCGAAGGAACCTAA
Protein Sequence
MSEMKETGISDIMDREPVEVAVKITEDAADCIDNNNCCYCAEEFASAEIRDKHEIQCHMGPQLTVCLSVINIHDTVIRNCPDDESRETSSNKSSNQKCLDQQFLQKVSKLKHATCATKDRDVKLKRHSSTNDDEAEKMHYKCEQCGYETHRKWCFNQHEHDIEGTLKNFKCNQCDYTSHFKKYLSTHKLVHDLDRVNKKYKCEQCDYKTHSNASLKQHKLTHDSEGRKSNLNKHRHFKKYLSTHKLVHDLDRVNKKYKCEQCDYKTHSNASLKQHKLTHDSEGRKSNLNKHQLVHDVKEIHKKYKCDLCDYKSNYNHSLKQHTLLCHALERPNKKYKCEQCDYKTHLNGRLKQHKYKHDSEGIYKNYKCELCDYKTHFNGNLKQHKLTHDSKGTYKNYKCELCHYKSHYKSNLNKHQLVHHVKEIYKKYKCDLCDFKSIYKGGLKQHKLTHDSEGAYKNYKCELCDYKTHAKCKLKQHKLTHDSEGTYKNYKCELCNYKTHFNGKLKQHKLTHDSEGTYKNYKCELCDYKTHYNGDLKRHKLTHDSEGTYKNYKCELCDYKTHYNGDLKRHKLTHDSEGTYKNYKCELCDYKTHYNGDLKRHKLTHDSEGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-