Cmac011701.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010008815.1:37522-58608[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00016 0.011 16.2 0.7 2 23 221 243 220 243 0.94 2 15 0.26 19 6.1 3.8 1 23 255 277 255 277 0.97 3 15 0.018 1.3 9.8 2.2 2 23 306 328 305 328 0.92 4 15 2 1.4e+02 3.3 1.9 2 23 362 385 361 385 0.90 5 15 0.074 5.2 7.8 0.3 2 23 401 423 400 423 0.93 6 15 0.011 0.75 10.5 2.6 1 23 435 457 435 457 0.98 7 15 0.026 1.9 9.2 2.1 2 23 468 490 467 490 0.94 8 15 0.00019 0.014 16.0 2.6 1 23 502 524 502 524 0.98 9 15 0.0031 0.22 12.2 1.8 1 23 569 591 569 591 0.98 10 15 5.1 3.6e+02 2.0 0.6 3 23 603 624 601 624 0.88 11 15 0.45 32 5.4 1.1 2 23 637 658 636 658 0.96 12 15 0.003 0.21 12.2 2.2 2 23 669 691 668 691 0.96 13 15 0.068 4.8 7.9 3.5 1 23 703 725 703 725 0.97 14 15 0.018 1.3 9.8 1.2 2 23 736 758 735 758 0.96 15 15 0.084 5.9 7.7 5.7 1 23 770 792 770 792 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTTTGTGATAcaaatattgtaaatataagGACTGGTAATACAGTTCAACAGATTACTATGCAGAATGAAATGCTAGCTGTTGAAGAAGCTATGAAAAAAGAAGTGGGTGAAGTCAAGATTAAGACCGAAACAGCGGAGGTAGAGAGTGAACCATGTTATCTCTGGAGTGAACTATTTGGAATTGAACAAACTAGGGGACCAACAGCTAAATATGCAAATGCAGATGAGACAGTGGTGAACAGGAGCAAAGAAGGGCAGAGTGGCAAAGATTGGAGAAATGACCTTGAGATGCAAGATATTAAGGTTAAGTTTGAGGAGGATATGAACTGTGGGGAATTCAAAATCAAAGTTGAGGAAGTAATTATGAAACATGAAAATGATGATATGAATAATGCATACAGAGAAATAACTGTGAATAGAATTAAAAAGGAACAGAATGTTAAAAATTGTAACAATGAACATTCAATACAAGATACTGAATTGAAGTTGGAGGAGGATGTCAATTGTGAAGAATCCAAAATTGAGTTTGAGAAGGTGATCATTAAAGGCGAACATGATGATTTAGAGGATGgaaaaaatacagaaatagATGTGAATAGATCTCTGGAAATCACCAATGAACAAAATCAGCACCTGAAGAGGGAAGATAATGTGACGTGTACACAGTGTAATACAGCATTCAAACGTAAATCAACCCTGGATGACCATATAGTCAGGATGCATCCTCATTTGATTGCTTCTGTGtctagtaaaatatatgaatgtacaCATTGTATGTACAAGACGATTATGAAGGATCGCTTGACCAAACACATGTCTCAGCATTACAAAACGGCAGATAATTATAAACTCAGATCTATGGAAATCACCACCAGGCAAAATCATCACCTCAAGGCAGAAGCTAAGTGGAAGTGTAAACACTGTAATACTGGATTCAAACGCAAATTAACCATGGATGACCATATAGTTAGGATGCATTCTGATTTGATCGCTTCTGTGAAAACAGAAGAACATAAACTCAGATCTCTGGAAATCACCACCAGGCAAAATCAACACCTCAAGACAGAAGCTAAGTGGAAGTGTAAACACTGTAATAGTACTGCATTCAAACGCAAATTAACCATGGATGACCATATAGTTAGGATGCATTCTGATTTGATCGCTTCTGCGAAATCAGCAGATAGTTACAAACTCAGGTGTGTTCAATGTGATGCAGTATTCACACGTAAACCGACCCGAGATGAACATATAATTAAGAAACATCCTAACTCTCTTGCGTCTGTGTCCAGTAAGATACACCAATGTGCATATTGCACATATCAAACTGTCATTAAGTCTCAATTTGCCAGACATATGTTGAAACATCCAGAAACAGCAGATAGCTATGAGCTCAGCACATGTGTTCACTGTAATGCTACTTTCAAAAGTAAACGAGCCCTTGATGGCCATACTCTCAGAAAACATCCTGGTTCCGCTGGATCCGTTTCTACTAAAATGTATGAATGTACACATTGCACATTTAAGACTGTCAGGAAAGTTGATTTAGCTCGGCATATGTTAAAACATCCAGAAACAGCAGATAGCTATAAGTTTAGCACGTGTATTCACTGTAATGCTAAATACAATTATAAAATATACCTGGATGACCATACAGTTAGGCAACATCCAGAATACATTGCGTCTGTTTCTAGGAAAATATACGAATGTACACAATGTTCATGTAAAACTGTCATGAAGGCTAATTTGGAAAATCACATATTGAAACATCCTGAAACAGCAAATAACTATAAGTTTAGCACGTGTATTCACTGTAATGCTATATTCAAACGTAAACCAATCCTGGATGAACATATACTTAGGCAACACCCTGAATATATTGCGTCTGTTTCTAGTAAAATACTTGAATGTACACAATGTTCTTATAAAACTGTCATGAAGTTTAATTTAGATTATCACGTGTCGAAGCATCCTGAAACAGCAGATAGCTATAAGTTTAGCACATGTGTTCACTGTAATGTTAAATACAAACGCAGAGTAAATCTGGATAACCATATACTTAAGCAACATACAGAATACATTGCATCTATTTCTCTTaaaatacatgaatgtacacATTGCGCATTTAAAACTGTCATACCAGCGCATTTAGCTCGTCATATGTCAAAACACCCAGAAACAGCAGATAGTTATAAGTTCAGCACATGCGTTCATTGTAATGCTACTTTCAAAGGTAAGCAAGCTCTTGACGGTCATATGCTCAGAAAACATCCTGATTCCATTGGAtccatttctactaaaatatatGAGTGTATGCATTGTGCATATAAAACTTGTAAGAGAAGTAATTTTGCAACACATATATTGAAACACCTTTAA
- Protein Sequence
- MEVCDTNIVNIRTGNTVQQITMQNEMLAVEEAMKKEVGEVKIKTETAEVESEPCYLWSELFGIEQTRGPTAKYANADETVVNRSKEGQSGKDWRNDLEMQDIKVKFEEDMNCGEFKIKVEEVIMKHENDDMNNAYREITVNRIKKEQNVKNCNNEHSIQDTELKLEEDVNCEESKIEFEKVIIKGEHDDLEDGKNTEIDVNRSLEITNEQNQHLKREDNVTCTQCNTAFKRKSTLDDHIVRMHPHLIASVSSKIYECTHCMYKTIMKDRLTKHMSQHYKTADNYKLRSMEITTRQNHHLKAEAKWKCKHCNTGFKRKLTMDDHIVRMHSDLIASVKTEEHKLRSLEITTRQNQHLKTEAKWKCKHCNSTAFKRKLTMDDHIVRMHSDLIASAKSADSYKLRCVQCDAVFTRKPTRDEHIIKKHPNSLASVSSKIHQCAYCTYQTVIKSQFARHMLKHPETADSYELSTCVHCNATFKSKRALDGHTLRKHPGSAGSVSTKMYECTHCTFKTVRKVDLARHMLKHPETADSYKFSTCIHCNAKYNYKIYLDDHTVRQHPEYIASVSRKIYECTQCSCKTVMKANLENHILKHPETANNYKFSTCIHCNAIFKRKPILDEHILRQHPEYIASVSSKILECTQCSYKTVMKFNLDYHVSKHPETADSYKFSTCVHCNVKYKRRVNLDNHILKQHTEYIASISLKIHECTHCAFKTVIPAHLARHMSKHPETADSYKFSTCVHCNATFKGKQALDGHMLRKHPDSIGSISTKIYECMHCAYKTCKRSNFATHILKHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -