Cmac004812.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Callosobruchus maculatus
Gene Symbol
-
Assembly
GCA_900659725.1
Location
CAACVG010006639.1:100939-111426[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.009 0.64 10.7 4.1 1 23 200 222 200 222 0.98
2 16 0.025 1.7 9.3 0.9 2 23 243 265 243 265 0.95
3 16 1.4 97 3.8 5.7 2 23 310 332 309 332 0.94
4 16 0.0039 0.28 11.8 5.7 1 23 344 366 344 366 0.98
5 16 0.0065 0.46 11.2 1.3 2 23 377 399 376 399 0.94
6 16 0.0093 0.65 10.7 5.7 1 23 411 433 411 433 0.98
7 16 0.34 24 5.7 5.0 2 23 441 463 440 463 0.92
8 16 0.061 4.3 8.1 1.7 1 23 475 497 475 497 0.95
9 16 0.0026 0.18 12.4 0.7 2 23 508 530 507 530 0.94
10 16 0.027 1.9 9.2 6.2 1 23 542 564 542 564 0.98
11 16 0.029 2 9.1 0.2 2 23 590 612 590 612 0.94
12 16 0.38 27 5.6 3.0 1 23 624 646 624 646 0.97
13 16 0.00011 0.0076 16.8 3.4 2 23 659 681 658 681 0.96
14 16 0.011 0.79 10.4 5.0 1 23 693 715 693 715 0.98
15 16 0.0016 0.11 13.1 1.8 2 23 726 748 725 748 0.95
16 16 1.1 76 4.2 7.8 1 23 760 782 760 782 0.98

Sequence Information

Coding Sequence
ATGGAAGATATGTATTCAGGAGAAAGTTCAAAAAGTAAATTCACCAGGCGTAAAACAGCACAGTCTCCAAGTTCCTCTACAGATTCAGCACCAGAGCTTGACAATTTGCCTGACAGTGTTTTTACTCTGAAGCAAGAACTGACTACGCATTATGATGCAGAGTCTCCAAGTGCTTCTGGTTCAGCACCAAAGCTTGAAAATTCACCTGAAAGTATTGTTATTGTCAAGGAAGAACTGACTACACCTTATGATGCACAGTCTTCAAGTTCTACTGCTTCATTACTGAAGCTTGAAAATTTGCCTGAAAGTATTGTTACTGTGAAGGAAGAACTGACTACAAATTATGATGCACAGTCTTCAAGTGCTTGTGGTTCACCACCGAAGCTTGAAAATTTTCCTGAAAGTATTGTTACTGTGAAGAGTGTGGAGCAAGAACTCACTACACATTATGATGTGCCGTCTTCGAGTTGTAGTTCTACTGATTCAGCACCAGAGCTTGAAAATTTGCCAGAAATTACTATGGGGCAAGAACTttCTGTAAGAGAGAAGATTAGGATGAAAATTCAAGCAACCCAAACTAATGCAGACAGAAACTCGTTTAGctgttattattgtaattatacGTTTTTGAGTAAGCATCGCTTGATTGATCACATGAAAGTTCATAAGACAAAGAAAAATATGTTAGATTGTGATCCTTGCAGAGGTAGATCTAGAGGTAGCAGGACTTGTTTGCGTTGTAACGCGAAATTTAGACGTCAAATAACTCTAGATGAACACATTTTAAAAACGCATCCAAATTTTGTTGCAACTGTTACTAGCAAAGTATTTGAATGTAAGCTGTGTGCCTTCAAAACTACCATAGGCCGTTCTTTCAAAGAGCATCTGTTTAAACATCCTGAAGTAAATACTAACTATAAGTTAAAAACGTGTACGCACTGTGATGCCACATTCAGATGTAAAACCTCCCTGGATTACCATCTGATCAGGAAGCATCCAGATTTTATCTCATCTGTTACTAACAAGTTACATAAATGTACCAAGTGCAGCTTCGTAACTGTCAAAAGCAGTCACCTGAAGGGTCATATGTCAACACATTCTGAAACACCTGTTAATGATACACTTTGGAATTGTCTCCACTGTGAAGCAATGTTTAAAAGAAAAGCTTCGTTAGATAATCATACAATAAAAAaccatccaaattttatttcgacTATTACTAACAGAGTACATAAATGTTCAAAGTGCAGTTATGAAACTACCATGAGGGGCCACCTGAAGAACCATCTATTAACACATGTAGAAACTCCTACCCTTTGTACATGTCTGCATTGTACGGAGACATTTAAAAACAAGTTATTCCTAGATGACCATATAGTAAAGAAGCATCCAATTTTTATTGCATCTGTTACTAGCaaaatacatgaatgtacacTATGTCCCTTTAAAACTACCAGAATAAGTACTTTCAAAGAACATGTTTTAGAACATCCTGAAATAAATACTAACCGTAAGTCCACCACTTGTACGCAGTGTAATGTGACATTCAATAGAAAAATTGCCTTGGACAACCATATAGTaaagaaacatccaaatttgACGTCTTCTGTTACTAACAAAATTCATAAATGTACAAAGTGTAGTTATAAAACTACCATAAACAGTTCTTTCAAAAGACATCTTTTAAAACATCCTCAAACAAATACTCCTTCTGTTATTAACAAAATTCATAAACGTATTGAAACTTCTGATAAACAGGTACTTAGAACATGTGCAATCTGTTATTTAgcgttcaaaaataaaatatcgttAGACGACCATATAGTaaagaaacatccaaattttattcCATGTGTTACTAGCAAAATACATGAGTGTACACAATGTACCTATAAAACTACCGTTAGCGGTCGTTTCACAGAGCATTTGTTAAAACATTctaaaacaaatccttatttcattcaTAAGATCAGCACATGTAAGCATTGTAATGCGACATTCAAAAGCAAGAGTTCGTTGGACAACCACATAATAAAGAAACATCCAAGTTTCATCTCTTCTGTCACTAACAAAATTCATAAATGTACAAAGTGTAAATTTGCAACTGTCAAAATCAGTCACCTGAAGGCTCATCTGTCAACACATTCTAAAACACCTGCTAATGATAACATTTGGAAATGTCTCCACTGTGAAGCAACGTTTAAAAGAAAAGCTTCATTAGATAATCATACAATAAAAAaccatccaaattttatttcgacTATTACTAACAGAGTACATAAATGTACAAAGTGTACTTTTAAAACTACCATAAGAGGTCATTTGAAATACCATCTGTCAAAACATTCTGAAACATCTTGTTATCCTTCACCTAAAACATGA
Protein Sequence
MEDMYSGESSKSKFTRRKTAQSPSSSTDSAPELDNLPDSVFTLKQELTTHYDAESPSASGSAPKLENSPESIVIVKEELTTPYDAQSSSSTASLLKLENLPESIVTVKEELTTNYDAQSSSACGSPPKLENFPESIVTVKSVEQELTTHYDVPSSSCSSTDSAPELENLPEITMGQELSVREKIRMKIQATQTNADRNSFSCYYCNYTFLSKHRLIDHMKVHKTKKNMLDCDPCRGRSRGSRTCLRCNAKFRRQITLDEHILKTHPNFVATVTSKVFECKLCAFKTTIGRSFKEHLFKHPEVNTNYKLKTCTHCDATFRCKTSLDYHLIRKHPDFISSVTNKLHKCTKCSFVTVKSSHLKGHMSTHSETPVNDTLWNCLHCEAMFKRKASLDNHTIKNHPNFISTITNRVHKCSKCSYETTMRGHLKNHLLTHVETPTLCTCLHCTETFKNKLFLDDHIVKKHPIFIASVTSKIHECTLCPFKTTRISTFKEHVLEHPEINTNRKSTTCTQCNVTFNRKIALDNHIVKKHPNLTSSVTNKIHKCTKCSYKTTINSSFKRHLLKHPQTNTPSVINKIHKRIETSDKQVLRTCAICYLAFKNKISLDDHIVKKHPNFIPCVTSKIHECTQCTYKTTVSGRFTEHLLKHSKTNPYFIHKISTCKHCNATFKSKSSLDNHIIKKHPSFISSVTNKIHKCTKCKFATVKISHLKAHLSTHSKTPANDNIWKCLHCEATFKRKASLDNHTIKNHPNFISTITNRVHKCTKCTFKTTIRGHLKYHLSKHSETSCYPSPKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-