Cmac003759.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010005267.1:46229-122536[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.044 3.1 8.5 2.8 2 23 134 155 133 155 0.96 2 19 1.8e-05 0.0012 19.2 1.0 2 23 186 208 185 208 0.95 3 19 0.029 2.1 9.1 3.9 1 23 220 242 220 242 0.98 4 19 3.2 2.2e+02 2.7 1.5 3 23 254 275 253 275 0.91 5 19 0.015 1.1 10.0 4.4 1 23 287 309 287 309 0.98 6 19 0.031 2.2 9.0 1.4 3 23 321 342 319 342 0.91 7 19 0.46 33 5.3 3.4 1 23 354 376 354 376 0.97 8 19 0.0016 0.12 13.0 1.7 2 23 396 417 395 417 0.96 9 19 0.0016 0.11 13.1 1.3 2 23 464 486 463 486 0.95 10 19 0.033 2.3 8.9 1.3 3 23 500 520 498 520 0.98 11 19 10 7e+02 1.1 1.8 5 23 534 553 532 553 0.92 12 19 0.054 3.8 8.3 2.9 1 23 565 587 565 587 0.98 13 19 0.0015 0.1 13.2 2.0 2 23 605 626 604 626 0.96 14 19 0.0012 0.084 13.5 2.3 2 23 670 692 669 692 0.95 15 19 0.00068 0.048 14.2 2.7 3 23 706 726 704 726 0.98 16 19 1.4 1e+02 3.8 0.4 3 23 737 758 736 758 0.94 17 19 0.49 35 5.2 5.2 1 23 770 792 770 792 0.97 18 19 0.0098 0.69 10.6 0.2 3 23 804 825 803 825 0.96 19 19 3.6 2.5e+02 2.5 0.9 1 16 837 852 837 853 0.93
Sequence Information
- Coding Sequence
- ATGAAAGCTCgtacaaataaaaaacatgCTCATATGCCAGTGTTTTTTTCAGCTTGGTTTTTAACGATAGATAGACATGGtcttaaacttttttttggtaaCGGTTTTTACTATTGCAGAGCCAAAATAGAACCCGCAGAAATGGAAAAGTGGGCCACATATGACTTGGACCCAGAAGTTACTTTGGAGAATATGAAAACCGAAGTGCCTTTCGATGATGATGAATTTGATTACAATATTGATATTAGGCAACTTTATGGAGAAGTGGGCATTAAAAGTGAAAATGATAAAAGTGTGAATTTTACACATGATGTGGTGGTAGTGCACAGtgttccGCAAGAACAAATCTtaaaagaagaagatgataTACTATATGGTAATGAGGAAAAAGGGTTACTCAATTGCTATCATTGCAATTATTCTGCTGACCATAGAATCTCGCTCATCGACCACATGAAATCTCATATGAACGAAAAACATGCTCATATGTActcagaaaatgaaaatattattaaacatcCCAACTCCGTCACCTCAAAATCTTCCAGGCAGCTCAGATGTGAAGGTTGCGATGCGACATTCAACAGAAAATCAAATTTGGATCGACATACGTTAAGAAAACATCCACAATTTATTTCTTCAGTTACAAGCAAAATACATGAATGCAAAATCTGTACCTATAAAGCCATAACGAAATTTCAGTTTGATAGTCACATGCGAAAGCATTCTGGAGAAGAACCACCCAATAAGTTTAGAAGTTGTATACATTGCAACGCGAGGTTCGCATCGAAAAGAGCTATGGATAATCATGTATTACGAAAACATCCGAAATTTATTGAAACACTTACAAACAAGATACATGAATGCAAAATCTGTACCTATAAAGCAATAACAAAATTTCAGTTTGATAAACACATGCGAAAGCATTCTGGGGAAAAACCACCCACTAAGTTTATAAGTTGTATACATTGCGACGCGAGATTctcatcgaaaaaaaatttggatGATCATGTATTACGAAAACATCCGAAATTTATTGAAACAGTTACAAGCAAGATACATGAGTgtaaattttgtatatataaaactacaGTTAAAAGTGGTTTTATAAAACATATGCTAAAGCATGGCAGAACAAATTCTAGTTATAAATTTAACAATTGTAATTTTTCTGAAGGGTTACTCAGTTGCTATCATTGTAATTACTCTGCTGACCACAAAGCCTCGCTCATCGCCCATATGAAGGTTCATACAAATGAAGAACATGCTCATATGGAcccagaaaatgaaaatattattgATCAACCCAATTCCGTCACCACAAAATCCTCAACAATCAATGataagctattttccaagcatcGTAGAAGTGTTACTTCCAAGCAGCTCAGCTGTGAAGGTTGCGATGCGACATTTACCAGTAAACATGGTTTGGATCAGCATACGTTGAAAAAGCATCCACAATTTATTTCTTCAGTTACAAGCAAAATATATGGATGCAAAATATGTGCCtataaaactataacaaaacgTCTGTTTGATAACCACATGCGAAAGCATTCTGGGGAAAAACCACCCGATAAGTTGAGAGGTTGTATACATTGCAACGCGAGATTTGCATCGAAAAGAACTATGGATGATCATGTATTACGAAAACATCCGAAATTTATTGAAACAGTTACAAGCAAGATATATGAGTgtaaattttgtatatataaaactacaGCTAACAGTGGTTTCAAAAAACATATGCGAAAGCATGGCAGAACAAATTCTAAATTTAACAATTGTAATTTTTCTGAAGGGTTACTCAGTTGCTATCATTGTAATTATTCTACTGACCGCAAAAGATCGCTCATCGACCATATTAAAGTTCATACAAATGAAAAACATGCTCATATGGActcagaaaatgaaaatattattaatcaaCCCAATTCCGTCACCACAAAATCCTCAACAATCAATGATGATAAACCATTTTCGAAGCATCGTAGCAAGCAGCTCAGATGTGAAGCTTGCGATGCGACATTCACCAGTAAACATAATTTGGATCGGCATACGTTGAAAAAACATCCACAATTTATTTCGTCAGTTACAAGCAAAATATATGGATGcaaaatatgtacctataagACTACAACAAAAAGCCAGTTTGACACACACATGCGAAAGCATTCTGGGGAACCAAGCCCTGAAATTAGGAGTTGTGTTTATTGCAATGCGATATTGTCATCGAAAAAATCAATGGATGAGCATCTATTACGAAAACATCCGAAATCTATTGAAACAGTTACGAGCAAGATACATGAGTgtaaattttgtatatataaaaccACAAATAAGGTTTATTTTAAAAGGCATATGCTAAATCACCCCGAAACAATGTCTAGTTATAAATTCAACAATTGCGATGTTTGTGAAGCAAAGTTTGTAAAGAAAGAATCGTTATATGATCACATATTGAGAGAACATCCCGAATTTACATCGTTAATTAAAAGTCAAATCTATCAATGTCAATTGTGTTCCTACAAAACAACACTGAAATACAATCTTGACGGACGACATATTAACAAGAAATGCATATCTGTTCACTCTGCAATACAGTGTTCAGAAGTAGAAAAGCAGTTGATGCACATTTATGTCAGACAAACATCAGGAACATATCACATCAACTATAGTACAATATATTCATGGCTGCAGGCAAAACCATGGAATCTGAAGCTATCAACAAACAAATACTGTGATGATTATGAAAAGTCGGACCTAGTAGTAGACGTGGATTGTCACACATTTGAAAGTAGAGAAACAGCAGAGACATTTGAGGAACTATCTATTAAGAATGACATAGAAATTGATGAAGATACTAGTATAAAATTTGAAAGAGAGAAACAATGGGACCAAGGTGACTTGGTTACAAAAGATCAGATTGAGGAAATAAAATCTGAAATATGTATGGAGGAAGACCTAGAAGCTATGCAACCTCAACCAGAGGTAGCGTTCAACAATGAAAATGATAGACGTGTGACAACTATAAGTAATATAGTGCTCAATAGaataaaaatCAAGCAAGAAGAAGATTGGACAGATTGCTATGAATATAAAGTTGACCTTACGAAAGTATGGTTAGAAACATCAGATGTAAAGACCGAGCTCGAAAAAAACAGCTCACTAACCAACATGGATAAGTGTGAAAGGCTAGACAGGTTTTGCAGAACagcatttgacaaaaaaatatttaattgtagTACAATAAATAATGAACTTGCACAAATGGGAAAATTAGACAATTATAATTTGACCAGTGTGGCCTATATTAAGAGAAATGAGTTTGATCTCGATAGCAAGCAACTACACGAagagatagaaataaaacgtgaAGATCGTAGAAACTTGAGGCCTAGATGGTATCGAGTGGTGAATAGTACAATGAAGGAAAAGACCAAAGAATCCAATAACATTGATTCGGAAATTGCTACCAATGAATGTACAGATGAAAAAGAACAAACAAGAGGAACGAACATGATAAaatggaaaaaattgaaaatctcatTATACCCCTTGGTATAG
- Protein Sequence
- MKARTNKKHAHMPVFFSAWFLTIDRHGLKLFFGNGFYYCRAKIEPAEMEKWATYDLDPEVTLENMKTEVPFDDDEFDYNIDIRQLYGEVGIKSENDKSVNFTHDVVVVHSVPQEQILKEEDDILYGNEEKGLLNCYHCNYSADHRISLIDHMKSHMNEKHAHMYSENENIIKHPNSVTSKSSRQLRCEGCDATFNRKSNLDRHTLRKHPQFISSVTSKIHECKICTYKAITKFQFDSHMRKHSGEEPPNKFRSCIHCNARFASKRAMDNHVLRKHPKFIETLTNKIHECKICTYKAITKFQFDKHMRKHSGEKPPTKFISCIHCDARFSSKKNLDDHVLRKHPKFIETVTSKIHECKFCIYKTTVKSGFIKHMLKHGRTNSSYKFNNCNFSEGLLSCYHCNYSADHKASLIAHMKVHTNEEHAHMDPENENIIDQPNSVTTKSSTINDKLFSKHRRSVTSKQLSCEGCDATFTSKHGLDQHTLKKHPQFISSVTSKIYGCKICAYKTITKRLFDNHMRKHSGEKPPDKLRGCIHCNARFASKRTMDDHVLRKHPKFIETVTSKIYECKFCIYKTTANSGFKKHMRKHGRTNSKFNNCNFSEGLLSCYHCNYSTDRKRSLIDHIKVHTNEKHAHMDSENENIINQPNSVTTKSSTINDDKPFSKHRSKQLRCEACDATFTSKHNLDRHTLKKHPQFISSVTSKIYGCKICTYKTTTKSQFDTHMRKHSGEPSPEIRSCVYCNAILSSKKSMDEHLLRKHPKSIETVTSKIHECKFCIYKTTNKVYFKRHMLNHPETMSSYKFNNCDVCEAKFVKKESLYDHILREHPEFTSLIKSQIYQCQLCSYKTTLKYNLDGRHINKKCISVHSAIQCSEVEKQLMHIYVRQTSGTYHINYSTIYSWLQAKPWNLKLSTNKYCDDYEKSDLVVDVDCHTFESRETAETFEELSIKNDIEIDEDTSIKFEREKQWDQGDLVTKDQIEEIKSEICMEEDLEAMQPQPEVAFNNENDRRVTTISNIVLNRIKIKQEEDWTDCYEYKVDLTKVWLETSDVKTELEKNSSLTNMDKCERLDRFCRTAFDKKIFNCSTINNELAQMGKLDNYNLTSVAYIKRNEFDLDSKQLHEEIEIKREDRRNLRPRWYRVVNSTMKEKTKESNNIDSEIATNECTDEKEQTRGTNMIKWKKLKISLYPLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -