Cmac001685.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010001960.1:168260-194790[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.22 16 6.3 9.9 1 23 133 155 133 155 0.97 2 17 0.084 6 7.7 0.3 5 23 217 236 214 236 0.89 3 17 4.8 3.4e+02 2.1 5.0 1 23 248 271 248 271 0.96 4 17 0.01 0.74 10.5 0.3 2 23 282 304 281 304 0.95 5 17 0.12 8.2 7.2 5.5 1 23 316 338 316 338 0.97 6 17 0.00096 0.068 13.8 0.5 2 23 349 371 349 371 0.94 7 17 2.8 2e+02 2.9 3.2 1 23 383 405 383 405 0.90 8 17 0.00043 0.03 14.9 0.7 2 23 416 438 416 438 0.94 9 17 0.012 0.86 10.3 1.1 1 23 450 472 450 473 0.95 10 17 0.00011 0.0079 16.7 0.8 3 23 484 505 483 505 0.96 11 17 0.3 21 5.9 5.6 1 23 517 539 517 539 0.97 12 17 6.7e-05 0.0047 17.4 1.4 2 23 550 572 549 572 0.95 13 17 0.00011 0.0079 16.7 1.1 2 23 617 639 616 639 0.94 14 17 0.25 18 6.2 6.5 1 23 651 673 651 673 0.97 15 17 0.0072 0.51 11.0 2.7 3 23 727 748 726 748 0.96 16 17 0.025 1.8 9.3 3.7 1 23 760 782 760 782 0.97 17 17 0.0041 0.29 11.8 0.1 3 23 794 815 793 815 0.95
Sequence Information
- Coding Sequence
- ATGAATATCGATAAGATGATTAAAGTTGAAGAATTTGAGTGTGATATGGGTAGACAAGAATATGAGGATTTTACACAGTCTACTGGAGAATATGCCACAACTGAAGTGAATAGATTACATACAGAAgtatttattaaaaatgaaaTGGATACGAGTACTGATATACTCCTAGAgagAATAAGAGATTCGAATGAAAGTCCAAGCAGGTTGATTAAACTTGAAAAGGCTGATCCAGAAATGTCTGTGGATGAACAGGGATATACAGATGCTCTACAGCTGAATGAAGAATTGAATATCGAAAATTTGACATTTACAAACGCAGGGGCATCATACCTAGATAGtgcaATGAGGGCAGATGAACAGGCACAAGTTGACAGCAATACTGGTGGAGATTTATTCTATTGTCATCATTGCGATTATGCTACTAGCAGCAAATTTCATCTAACCTTCCATATGAAATTTCATAGAAAGAAAAGACACACGTACAACTGTTGCTACTGTAAATTTCAAACGAATTTGAGGAGATTATTCAGTAGTCACTTAAAAACACATTCAACAAATTATTCACAATTCGAGTTTGTAAACGTAAAAGAAGAAAGTGTTGATCCAGGTACAAGTGATGTTGAAGCGTCTAACAGAAACTGTATACACTGTAGTGCGGTATTTAAGGATGAGGCATATTTACAGGACCATATAatagaaaaacatccaaattttataTCATCTGTTACTAggaaaatttatcattgtaccAAGTGTCCTTTCAAAACTACAATTagcagcaaatatttttatacacATCTAATGCAACATCCTGATATTTCAGTTCTTAACAGGGGCACAAAATGCTTATATTGCGgtaaattatttgaaaataaagtcgTTCTAGACGATCATATAATCaagaaacatccaaattttgCTTCCTCtgtcactagaaaaattcacgAATGTACAAAGTGTGACTACAAAACTACCTTAAAGAATTTTTTCAAGCTGCATATGTTGAAGCACCCCGAAACATCTGCCTGTTATAGCTTAAGAAAATGTCCGCACTGTGATAAGGCGTTTGCGTTGAAAATTTCACTAGACGAGCATATTGTGAAAAATCATCCAAGTTTTATATCTTCTATATCTAGAAGTGTACATGAGTGCATAACATGCACTTATAAAAccgtaaaaagaaataatatgaagaaacatATGGTGCAACATCCAGAGTTGGTCGCCAATCGTTTGATAAGGAGATGTGATTATTGCGATAAGACGTTTTTACAAAAAAGGTCTTTAAACGATCATATACTTGAGGAGCACCCAGATTTTATAGCGTCAGTCAGTAGCAAAGTATACACGTGCAGCGAGTGTGATTTCAAGACCATAGTAATTTCAGCGTTTCAAAGGCATTTGTTGGAACACCATGGAATAGCTGTGAACACCAAGCTCAATAACTGTCCACACTGTGACGAAGCTTTCGAAAGAAAGACGGCACTAGATAACCACATTTTAAAAAAGCACAAAGATTTTTCGGAATCGGTTTCTAGACAGATCCATGAATGTACGCATTGCCCTTTCAAAACTACAATCCGCCGATATTTGGACAGACATCAGTTGAAACACCCCGAAACAGCCGCTAACTTTAGTTTTAGCGTATGCGAGCATTGCGGCAAGTCGTACAAAAGTAAGACGATGTTAGACGATCATATAATCCGGAAACATCCAAGTTTCCTTGCTTCGACTACTAGCAAGATACACGCGTGTTCAAACTGCGACTACAAAACTACCCTTATGCATTTTTATAAACTGCATTTGTTGAAGCATCCAGAGACAGCTTGTGATTACGACTATAGCAGATGCCCGCATTGTGATAAGGAATTTGTACGAAAGATGTCGCTGGACGATCATATCGTGAAGAATCATCCTAGTTTTATATCTTCTGTGACTTGCACCATACACAAGTGCACGCAGTGCTCTTTCAAAACTGTCGTACGTCATAAATTGACGAAACATATGGAACAACATCCTGAGATCGCTGGTAATCGTGTAATCAACAAATGTATACATTGTGATAAAATAGTCGAACAAAATGATCATATATCAAACAATCATCCAATTGGTAGCAAAATGCATCAGTGCGAGTTCAAAACTATAGCGATTCCAGCTGATGACAAGCACAAAATCTGTCAACACTGTAACGCGAggttcaaaaagcaaatgggGCTAGATAATCATATGCTAAAAAAACATCCTGATTTTGTAGCCTCGGTTAGTAGCAAAGTGCATGAATGTTCAAATTGCGATTTCAAAACTACCGTACTACGCGATTTTCAAAGGCATCAGTTAAAACATTCTCATACTGTTGTTAAGTTGAACTTCAACCCTTGTATGTACTGTAATGCCTCATTCAAAAGTGTGGGAGCGCTAGACAGACACATAACGCGGTGGCatcaaaatgttatttcttctAATAAATAA
- Protein Sequence
- MNIDKMIKVEEFECDMGRQEYEDFTQSTGEYATTEVNRLHTEVFIKNEMDTSTDILLERIRDSNESPSRLIKLEKADPEMSVDEQGYTDALQLNEELNIENLTFTNAGASYLDSAMRADEQAQVDSNTGGDLFYCHHCDYATSSKFHLTFHMKFHRKKRHTYNCCYCKFQTNLRRLFSSHLKTHSTNYSQFEFVNVKEESVDPGTSDVEASNRNCIHCSAVFKDEAYLQDHIIEKHPNFISSVTRKIYHCTKCPFKTTISSKYFYTHLMQHPDISVLNRGTKCLYCGKLFENKVVLDDHIIKKHPNFASSVTRKIHECTKCDYKTTLKNFFKLHMLKHPETSACYSLRKCPHCDKAFALKISLDEHIVKNHPSFISSISRSVHECITCTYKTVKRNNMKKHMVQHPELVANRLIRRCDYCDKTFLQKRSLNDHILEEHPDFIASVSSKVYTCSECDFKTIVISAFQRHLLEHHGIAVNTKLNNCPHCDEAFERKTALDNHILKKHKDFSESVSRQIHECTHCPFKTTIRRYLDRHQLKHPETAANFSFSVCEHCGKSYKSKTMLDDHIIRKHPSFLASTTSKIHACSNCDYKTTLMHFYKLHLLKHPETACDYDYSRCPHCDKEFVRKMSLDDHIVKNHPSFISSVTCTIHKCTQCSFKTVVRHKLTKHMEQHPEIAGNRVINKCIHCDKIVEQNDHISNNHPIGSKMHQCEFKTIAIPADDKHKICQHCNARFKKQMGLDNHMLKKHPDFVASVSSKVHECSNCDFKTTVLRDFQRHQLKHSHTVVKLNFNPCMYCNASFKSVGALDRHITRWHQNVISSNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -