Basic Information

Insect: Callosobruchus maculatus
Gene Symbol: -
Assembly: GCA_900659725.1
Location: CAACVG010000894.1:200547-205275[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.3 90 3.9 5.7 1 23 138 160 138 161 0.95

2 15 0.07 4.9 7.9 0.7 6 23 174 191 172 191 0.96

3 15 0.012 0.81 10.4 3.2 1 23 200 222 200 222 0.99

4 15 0.00071 0.05 14.2 4.0 1 23 231 253 231 253 0.99

5 15 0.02 1.4 9.6 4.4 1 23 262 284 262 284 0.97

6 15 0.0087 0.61 10.8 6.8 1 23 293 315 293 315 0.98

7 15 0.00028 0.02 15.4 3.2 1 23 324 346 324 347 0.96

8 15 0.26 18 6.1 1.1 1 23 353 375 353 375 0.97

9 15 0.0024 0.17 12.5 3.0 1 23 384 406 384 406 0.97

10 15 0.00039 0.027 15.0 2.4 1 23 415 437 415 437 0.98

11 15 0.005 0.35 11.5 2.2 1 21 446 466 446 467 0.96

12 15 0.0014 0.097 13.3 6.9 1 23 474 496 474 496 0.99

13 15 0.54 38 5.1 1.8 1 23 505 527 505 527 0.96

14 15 2.1e-05 0.0015 19.0 1.7 1 23 536 558 536 558 0.99

15 15 0.0012 0.087 13.4 1.8 1 23 567 590 567 590 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.3	90	3.9	5.7	1	23	138	160	138	161	0.95
2	15	0.07	4.9	7.9	0.7	6	23	174	191	172	191	0.96
3	15	0.012	0.81	10.4	3.2	1	23	200	222	200	222	0.99
4	15	0.00071	0.05	14.2	4.0	1	23	231	253	231	253	0.99
5	15	0.02	1.4	9.6	4.4	1	23	262	284	262	284	0.97
6	15	0.0087	0.61	10.8	6.8	1	23	293	315	293	315	0.98
7	15	0.00028	0.02	15.4	3.2	1	23	324	346	324	347	0.96
8	15	0.26	18	6.1	1.1	1	23	353	375	353	375	0.97
9	15	0.0024	0.17	12.5	3.0	1	23	384	406	384	406	0.97
10	15	0.00039	0.027	15.0	2.4	1	23	415	437	415	437	0.98
11	15	0.005	0.35	11.5	2.2	1	21	446	466	446	467	0.96
12	15	0.0014	0.097	13.3	6.9	1	23	474	496	474	496	0.99
13	15	0.54	38	5.1	1.8	1	23	505	527	505	527	0.96
14	15	2.1e-05	0.0015	19.0	1.7	1	23	536	558	536	558	0.99
15	15	0.0012	0.087	13.4	1.8	1	23	567	590	567	590	0.98

Sequence Information

Coding Sequence: atgtctAAGGTGAAAGAAGGAGCAGATATTACTGTATTGGACAGAGAACTTGATGAAGTCGACATGAATACAGAAGATGCAGCTGCCTGGATTGATTATAACTATTGTTGCCACTGTGCTGAAGAGTGTGCCTCATCAGAAATTAGAGACAAGCATGTTGTACAGTGTCACATGGGTCCACAGCTAATAGTACGCTTATCAGCCAGTGACGTCCATGATGCTGTCAGTCGAAATTGTCCAGATGACGAGATTAGCATACCTTGCCGCAAGTCCAGTAATCAgaAATGCTTGGATCAGCAGTTTTTGAGGGCAGGACCAAAATATGAGTCTGGGAGATTTGGAACAAAAGATGTTGTTGTGAAGCTCAAGAGGCTTTCTCTCGGTAACAACGGTGAAGGTGCAAAAACCCATTATCAATGTGAACAATGTGATTATGAAACACATTCCAAGAACATTTTCAAGAGACATCAGTCATTACATCATGTGGAGGGAAGCCATAAGAAATACAAGCATGAATCGTGTGATTATAAATCCAATTTTAAGAGCgatttaaataaacataaatcaACTCATGACGCAGAGGGGATTGataagaaatacaagtgtgaaGTGTGTGACTTTAAaactaattataagaacaatTCAAAGAGACATCAATTAACACACGAgccaaatgaaaataataagaaGTACAAGTGTGAGCAGTGTGATTATAAATCTAATCATAAAGGTACTTTGAATAATCATAAGCTAACTCATGATACACAGGGGATTTataagaaatacaagtgtgaaATGTGTGATTATAAGTCCCTCTATAAGAGTCACTTAAATAGTCATAAATTAACTCATGATGTAGATGGGATTTATAAGAAACACAAGTGTGAAATGTGTGATTATAAGTCCCATTATAAGGGTAACTTAAAGAAACATAAATTAACTCATGACACAGAGGGGATTTataagaaatacaagtgtgaaCTGTGTGACTATAAAACCAATTACAATTCTGCTTTAAAGCAGCATCAATTGCAGCATCATGATCCTGATAAGAAGTACAAGTGTGAGCAATGTGATTTTAAGAGTAATCTTAAGGGTCGAATTAATGTACATAGATTAACTCATGACACAGAGGGGATTTATAAGAAATATAAGTGTGACCTGTGTGACTATAAATCTCATCAAAAGGTAAAGTTAAAGCGACATCAAATAGCACATGATGTACAGGCAATTAataagaaatacaagtgtgaGCTGTGTGACTATAAATCTCATCGAAAGGATAGTTTAAAGGAACATCAAATAGTACATGATGTACAGGCAATTAataagaaatacaagtgtgaGCAGTGTGATTTTAAGTCCCGTTATAAGGGTGACTTAAATAATCATCATAAATTAACTTGTCTTTataagaaatacaagtgtgaaGTGTGTGATTATAAGTCCCACTATAAGAGTCACTTAAATAGACACAAATTAACTCATGACACAGAGGGGATTTataagaaatacaagtgtgaaCTGTGTGATTACAAAGCTCACCTAAAGAGTGTTTTAGATAATCATAAATTAACTCATGATACACGAGGGATTTATAAGAAATACAAATGTGTACTGTGTGACTATAAAACTAATCAGAAGGGCAATTTAAAGCAACATCAATTAACACATGAACAAGATGAAACTAAAAAGAAATACAAGTGTGAGCtgtgtgattataaatccaATATTAAGTCTAATGTGAAAAGACATAGATTAACTCAACATGGTACAgagagaatttga
Protein Sequence: MSKVKEGADITVLDRELDEVDMNTEDAAAWIDYNYCCHCAEECASSEIRDKHVVQCHMGPQLIVRLSASDVHDAVSRNCPDDEISIPCRKSSNQKCLDQQFLRAGPKYESGRFGTKDVVVKLKRLSLGNNGEGAKTHYQCEQCDYETHSKNIFKRHQSLHHVEGSHKKYKHESCDYKSNFKSDLNKHKSTHDAEGIDKKYKCEVCDFKTNYKNNSKRHQLTHEPNENNKKYKCEQCDYKSNHKGTLNNHKLTHDTQGIYKKYKCEMCDYKSLYKSHLNSHKLTHDVDGIYKKHKCEMCDYKSHYKGNLKKHKLTHDTEGIYKKYKCELCDYKTNYNSALKQHQLQHHDPDKKYKCEQCDFKSNLKGRINVHRLTHDTEGIYKKYKCDLCDYKSHQKVKLKRHQIAHDVQAINKKYKCELCDYKSHRKDSLKEHQIVHDVQAINKKYKCEQCDFKSRYKGDLNNHHKLTCLYKKYKCEVCDYKSHYKSHLNRHKLTHDTEGIYKKYKCELCDYKAHLKSVLDNHKLTHDTRGIYKKYKCVLCDYKTNQKGNLKQHQLTHEQDETKKKYKCELCDYKSNIKSNVKRHRLTQHGTERI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -