Basic Information

Insect: Callosobruchus maculatus
Gene Symbol: -
Assembly: GCA_900659725.1
Location: CAACVG010006790.1:14347-42472[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 7.7 5.4e+02 1.5 0.3 3 20 269 286 267 288 0.84

2 19 5.4e-05 0.0038 17.7 0.6 1 23 302 325 302 325 0.95

3 19 0.0024 0.17 12.5 1.3 1 23 337 359 337 359 0.96

4 19 7.8e-06 0.00055 20.3 3.2 1 23 366 389 366 389 0.97

5 19 0.0047 0.33 11.6 2.5 1 23 398 421 398 421 0.96

6 19 0.17 12 6.7 1.5 2 23 432 454 431 454 0.93

7 19 0.001 0.072 13.7 1.0 1 23 466 489 466 489 0.95

8 19 0.34 24 5.7 0.4 2 23 498 520 497 520 0.93

9 19 3.9 2.7e+02 2.4 0.2 1 19 532 550 532 556 0.74

10 19 0.16 11 6.8 4.4 2 23 561 583 560 583 0.92

11 19 0.0044 0.31 11.7 0.2 1 23 595 617 595 617 0.98

12 19 0.013 0.94 10.2 3.2 2 23 627 649 626 649 0.95

13 19 0.067 4.7 8.0 3.0 3 23 693 714 692 714 0.91

14 19 0.00045 0.031 14.8 1.3 1 23 726 749 726 749 0.97

15 19 0.01 0.73 10.5 2.4 3 23 761 781 760 782 0.95

16 19 0.47 33 5.3 1.6 1 23 794 816 794 816 0.90

17 19 0.0096 0.68 10.6 1.1 2 23 825 847 824 847 0.96

18 19 1 70 4.3 2.3 1 23 859 882 859 882 0.91

19 19 0.14 9.8 7.0 2.7 3 23 895 916 894 916 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	7.7	5.4e+02	1.5	0.3	3	20	269	286	267	288	0.84
2	19	5.4e-05	0.0038	17.7	0.6	1	23	302	325	302	325	0.95
3	19	0.0024	0.17	12.5	1.3	1	23	337	359	337	359	0.96
4	19	7.8e-06	0.00055	20.3	3.2	1	23	366	389	366	389	0.97
5	19	0.0047	0.33	11.6	2.5	1	23	398	421	398	421	0.96
6	19	0.17	12	6.7	1.5	2	23	432	454	431	454	0.93
7	19	0.001	0.072	13.7	1.0	1	23	466	489	466	489	0.95
8	19	0.34	24	5.7	0.4	2	23	498	520	497	520	0.93
9	19	3.9	2.7e+02	2.4	0.2	1	19	532	550	532	556	0.74
10	19	0.16	11	6.8	4.4	2	23	561	583	560	583	0.92
11	19	0.0044	0.31	11.7	0.2	1	23	595	617	595	617	0.98
12	19	0.013	0.94	10.2	3.2	2	23	627	649	626	649	0.95
13	19	0.067	4.7	8.0	3.0	3	23	693	714	692	714	0.91
14	19	0.00045	0.031	14.8	1.3	1	23	726	749	726	749	0.97
15	19	0.01	0.73	10.5	2.4	3	23	761	781	760	782	0.95
16	19	0.47	33	5.3	1.6	1	23	794	816	794	816	0.90
17	19	0.0096	0.68	10.6	1.1	2	23	825	847	824	847	0.96
18	19	1	70	4.3	2.3	1	23	859	882	859	882	0.91
19	19	0.14	9.8	7.0	2.7	3	23	895	916	894	916	0.92

Sequence Information

Coding Sequence: atggcAACGAGAAAATGGAACATCAGGAGCCTTCCTCGAAATGCGCATGAGGGTCGAATTTGGGCTGAGTCTGAGGGCCTCATTCCAACTGTCCCTCCTTTTTGCTCTGTTCACAAACAGAATTTCAAACTGTTTACGGAGGGACAGCATGGACTTGGTCGGTATAAATGCCCCAAAAAAGCCTGCAAGAAGCCAACCAAGGCTGTGGCAACAGGGACTTGGTTTGAGCAAAGCCGACTTCAGCCACATATAGTGGCTCAAGTCATGTATGGTTTTGCTCATGATTGGAGCTTCGAACAAATTAGGAATGAGGCTATTGATTTGTCACTCCCAGCTGAAGAGCGAAATACTTTAACCAATGAAACCCTTGTATGGTGGTCCCATTTCTGCCGAGAAATGATCGTCGACGACTTTTCATTTCGTCAATCGACTGTCAAACTTGGTGGACCTGGGAAAATCGTCCAAATTGATGAGTCCAAGTTTGGCAGATCGAAATACGGAAGAGGCAGGCGTGTCGACGGTCATTGGGTAGTCGGCATGATAGAGGATGGTCGAGATGAAGTTGTCTTTGTAGTTGTTCCTACTAGGGACAGTGAGACACTTCTCTCGACCATCCAACAGTGGGTCCATCCAGGCACCGAGATTCATACAGATTGCTGGAGAGGATATAATGGCTTGGCCCAACATGGTTACATCCACAAGACGGTGAACCACAGTGACGAGGAACATGGTGCCGTGAATGAGAAATACCCGGATAACGGACTAGAAGTAGGACATAGGAAAGCCGAGGGAGAATTATTAATTTGCTATACGTGTAATTACGCAGCTCGATGTAAAAAGAGTTTAGAGAAGCATATCGCTGCTAGAAATTGTCGTTTGAAAACATCAATACCAGCCTATAAACACGTTTGTTCACAATGTAACAGGGCGTTTGCTAGAAAAGAAAACTTAGATAATCACGTAATCAGAATTCATTCAGAGCTGCCTACAACGCATTCCAGAAAACTATATGTATGTTCTATTTGCAATTATAAAACTGTGAAAAAGAGTAACTACGACAGACATACGTCAGCACATTCTTCTGATCGTCAGGTTTTCAGTTGTAACTACTGCAGTGCTGCATTCACAACTAAACACAACCTAAACAATCATATAATGAGAAAACATCCCAACACTACTAGTGATACAGTACACAAATGTTCGGATTGTACATATAAAACcgtcaaaagaaatatgttaaACAAACACATCATGTTAGTACATCCTGATGTAGCTTCTGGTTCCTCATTTAACAAGTGCACAGATTGTGATGCAACATTTAAATGGAGATATAAGCTAGACGATCATAAACTGAAAAAACATCCAGGCAGTATCACCTCAGTCACTCATGAATTGCATGAATGTCCGGAATGTACATATAAAACAGTAAGAAAAAGCCTTTTTGATAGACATATTATGTTAGTGCATCCTGACTCTGCTTCTAGCACCAACAAATGTCTATATTGTGATGCAAAGTTTAAATGGGCATTCAATCTAGATGACCATATAGTAAGAAAGCACCCTGACCATATAAGCTCAGTTAAccgtaaaatatataaatgttcAGAGTGTACATATAAGACTTTAATGAAAGGTCTTTTAGACAGTCATATTGCGGCAATGAATCATGACGATATTAGCAAGTGTGAACATTGCACTGCTACTTTTCAAAAGAAACACACGTTAGATAATCATATAGTAAATAAGCATCCAGACTTTATTGCCTCGGTCAAACGAAAAATATATCAATGTCCAAGTTGCACGTATAAAACTATCGCTCCGAGGGCTCTAAAAAGACATTTACTGGTACATTCTAGTGCATCTTCTAAGTTGAGTATTTCCTGCGTACATTGTAAAGCGACATTTTGTGATTATACAACGCTAGATAATCATATGTTGAAAGAACACCCGAAACACATGAGCTCAGTCACTGGCACACTACACGAATGTCCACAGAGTCCctacaaaactataaaaaagaGTAATTTAGTCAGCCACAAGTCAATACATCCCGATACCCCCTCAATGTCTGTCAGTTGTATACATTGTACTTCGACCTTCACAAGAAAGTCTTCGTTAGACGACCACATTTTGAAAAAGCATCCTACCCACAAGGCATCAGTCACTAGTATAGTACACGAATGTTCGCAGTGTACATATAAATCTGTCAAGAAGGGTAATTTGAACGCCCACATTAGGTCAATCCATCCTGATGCATCATCCAGCGCAAGGCTTAACGCGTGTAAACATTGCAATGCTGCTTTTAAAAAGAAAGTATCACTAGATGGTCATATAATAAAACACCACCCGGATCTTGTTTCATCAGTAACAAGTAATGTATACCAGTGTACAATTTGTCCGTACAAAACTACTTTAAAGACTCTTCTAGACTGCCATCTACTGGTGCATCTACAGACAACTTCCAGGCGTAAGACGTGTACGGAGTGTCACGCGATATTTGGAGATAAAAGAAGTTTAGATAGTCACATCATAAAAAACCATCCCAATGCTGTGGGGTCAGTAACTCGCAAAGTGTATCAATGTTCACAATGTGAATACAAAACCGTAAGAAAGTGCCGTTTAGACGAGCATGCTACATCAGTACATAATAATGGTTCATCTTCTAGGTCTAAGCCTAACGTATGCATCCATTGCAATGCGAGTTTTAAAAGGAGTCTATCCCTAGACCATCATATAATAAGACAACATCCAGATGTCATCGCTTCCGTTACATGA
Protein Sequence: MATRKWNIRSLPRNAHEGRIWAESEGLIPTVPPFCSVHKQNFKLFTEGQHGLGRYKCPKKACKKPTKAVATGTWFEQSRLQPHIVAQVMYGFAHDWSFEQIRNEAIDLSLPAEERNTLTNETLVWWSHFCREMIVDDFSFRQSTVKLGGPGKIVQIDESKFGRSKYGRGRRVDGHWVVGMIEDGRDEVVFVVVPTRDSETLLSTIQQWVHPGTEIHTDCWRGYNGLAQHGYIHKTVNHSDEEHGAVNEKYPDNGLEVGHRKAEGELLICYTCNYAARCKKSLEKHIAARNCRLKTSIPAYKHVCSQCNRAFARKENLDNHVIRIHSELPTTHSRKLYVCSICNYKTVKKSNYDRHTSAHSSDRQVFSCNYCSAAFTTKHNLNNHIMRKHPNTTSDTVHKCSDCTYKTVKRNMLNKHIMLVHPDVASGSSFNKCTDCDATFKWRYKLDDHKLKKHPGSITSVTHELHECPECTYKTVRKSLFDRHIMLVHPDSASSTNKCLYCDAKFKWAFNLDDHIVRKHPDHISSVNRKIYKCSECTYKTLMKGLLDSHIAAMNHDDISKCEHCTATFQKKHTLDNHIVNKHPDFIASVKRKIYQCPSCTYKTIAPRALKRHLLVHSSASSKLSISCVHCKATFCDYTTLDNHMLKEHPKHMSSVTGTLHECPQSPYKTIKKSNLVSHKSIHPDTPSMSVSCIHCTSTFTRKSSLDDHILKKHPTHKASVTSIVHECSQCTYKSVKKGNLNAHIRSIHPDASSSARLNACKHCNAAFKKKVSLDGHIIKHHPDLVSSVTSNVYQCTICPYKTTLKTLLDCHLLVHLQTTSRRKTCTECHAIFGDKRSLDSHIIKNHPNAVGSVTRKVYQCSQCEYKTVRKCRLDEHATSVHNNGSSSRSKPNVCIHCNASFKRSLSLDHHIIRQHPDVIASVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -