Cmac003755.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010005267.1:20430-25201[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0081 0.57 10.9 0.6 2 23 104 125 103 126 0.94 2 15 0.54 38 5.1 2.6 3 23 158 178 156 178 0.92 3 15 0.96 67 4.3 1.0 2 23 184 205 183 205 0.73 4 15 0.0011 0.079 13.6 3.7 1 23 214 237 214 237 0.95 5 15 0.32 23 5.8 1.8 2 23 247 268 246 268 0.94 6 15 2e-06 0.00014 22.2 0.8 1 23 274 296 274 296 0.98 7 15 0.00046 0.032 14.8 1.6 1 23 302 324 302 324 0.98 8 15 0.00011 0.0075 16.8 0.2 1 22 330 351 330 351 0.95 9 15 0.11 7.8 7.3 0.9 2 23 413 434 412 434 0.93 10 15 6.4 4.5e+02 1.7 0.9 2 23 493 514 492 514 0.72 11 15 0.00077 0.054 14.1 2.0 1 23 523 546 523 546 0.94 12 15 0.0016 0.12 13.0 1.6 2 23 556 577 555 577 0.97 13 15 1.9e-06 0.00014 22.3 0.2 1 23 583 605 583 605 0.99 14 15 0.0021 0.15 12.7 1.9 1 23 611 633 611 633 0.98 15 15 0.019 1.4 9.7 0.3 1 18 639 656 639 656 0.91
Sequence Information
- Coding Sequence
- ATGACAGTTCTTTCTTCTATTCTGATATATTTTGCaatattatcaatttatatcTTATTAGTTGCTGTATTGAAACATTTTATAAATTATTTTACTATCTTATCAAAAGACAATAAACTATTTCGCAGTTTCTCAAACTTGTATTACGACATAAAATACTGTTTTAGGCGAAGAAATGGTAAACCTATTAGAAAGAAGAAACACTCTACAACGGCTGAGGAAAGAAAAAACATGTATAAAGCATCAAAAAGTATTAGCGAAAATGAATTAGAAAACTTCATTAACCTAAACGCCGTTGACAACCCATTGAAATGTCCGTCATGTCCTGAAACCTTCCCTTCTCACATAGGTCTCGCCTTACACTCAAAAATACACCACGATGTTGGTCGGTACACCTGTCACCTTTGTGATTACTCTGACCTGTTTTCAAGAAACATTGAGAAACACGTAAAGAAGCACGATACCTTTGGCTGTTTGAAATGCAAGCGAGTCTTCAAGAACAAGCTCTCAGCGTATAAGCATTCGAAGTTTCATCCTGAAGAGTACGTTGAGTGTGAGTTGTGTGGCCTTAGAATCAAACCTATGTATCTTAAGAAACACCACGAAAGAAGGCACACCAAAAACCCCAAGAAAAAGATCTACAAATGTTCGGTGTGTAATAAGGAATTCCTCCAACATGGAAATCTGCGGAGGCATTACTCTCAAAGACACGAAGAAGTTGGTATTGACGTGTCTGTGGTTTGCGATATTTGTGGCAAGAGACTTTCTTGCAGAGACAAGCTCAACTTCCATCAGAGACTGCACACAGGTCATAAACCCCACGTTTGCACCGTTTGTGGAAGGGGATTCACACAAAAGAGCATGTTGGATGGGCACATCAGAACCCATACCGGAGAAAAACCTTTTGTTTGCTCTTATTGTGGGAAAAAATTTGCCCATGGAGCTCCGTACAGGTACCACGTCAAGACCCACACTGGTGAAAAGAAGTTCGCTTGCGTGCTTTGTGGAAAGAAGTTCATAGCAAAGAGTAATATGAGGATCCATATGAAGACGTGTAATCTCTCTTCTAGGCGAAGAAAAACCAGGATCAAGCGTCCTAAAAGAGACAAAGATTGGGATCCTCCCAAAAACAAAGACAAAACTAAAAGAAACCCCAAAAAGAAACTGTCTTCAAAAAATGTCTCAGACTCGGACCTGCAGGACTTCTTCCACTTCAACCCAATCATCGAACCATTGGAATGTCAGTTTTGCCAAGAAGTGTTCACCAGTCACGTCGACTTTGGCTTGCATTCCATCAAACACAAAGAAGACAACACATATTCCTGCCACCTCTGCGAATTCTCAGAAAAATGTGCTGATAAGCTGATCGAGCATGTCCGAAAACACGACTCTTTGTGTTGCATCAAATGCAAGAAGGTCTTCAAGAACAGGCTGTCTGCTTACAAGCACTGCTTACACCACCCAGCGGCATACGTTGAGTGCGAAATCTGTGGGCATAAAGTCAAACCCAGGTACTTACCTGACCATCGGAAGAAGAAACATACTAAAAACGTTCCTAAGAAGATCTACACTTGCTCCATCTGTAACAAGTCTTATGCTGATCACACTGCTATGAGGGTCCACTATTCCCAGAAGCACAAAGAGATGGGCATAGACGTATCTGTGGTTTGTGATGTCTGTGGAAAGAGACTGTCTTGTAGGGACAAGCTTATCAAGCATCAACGCAGTCACAACGGTCATATGCCGTACGTTTGTCAGATTTGCAAACGAGGTTTTGCTCAGAATGCCACGTTGGAAGGGCATATGAGGACGCATACTGGAGAGAAGCCTTTTGTGTGCGTCTATTGTGGGAAGAAATTTGCGCATGGGACGCCTTACAGGTATCATGTGAAGACCCACACTGGAGAGAAGCAGTTCTCTTGTGATTTTTGCGGGAAGATGTTCATAGCTAGGAGTAATATGAAGAAAAATATACTTTTCTTGGTCAGTTTTGGAGCTATTCGCTGTTTTCCGTTAAGCATATATGTTCAGCAAGTTGCTCCAAAATGGATActcattcaaaataatattgtgTATGTTTCTTTAGTAATCACAGTATTTTTGAACCTTTGTGAAAGGACATTCCAAACGGTATGTttcaaaaaagaatttaattAG
- Protein Sequence
- MTVLSSILIYFAILSIYILLVAVLKHFINYFTILSKDNKLFRSFSNLYYDIKYCFRRRNGKPIRKKKHSTTAEERKNMYKASKSISENELENFINLNAVDNPLKCPSCPETFPSHIGLALHSKIHHDVGRYTCHLCDYSDLFSRNIEKHVKKHDTFGCLKCKRVFKNKLSAYKHSKFHPEEYVECELCGLRIKPMYLKKHHERRHTKNPKKKIYKCSVCNKEFLQHGNLRRHYSQRHEEVGIDVSVVCDICGKRLSCRDKLNFHQRLHTGHKPHVCTVCGRGFTQKSMLDGHIRTHTGEKPFVCSYCGKKFAHGAPYRYHVKTHTGEKKFACVLCGKKFIAKSNMRIHMKTCNLSSRRRKTRIKRPKRDKDWDPPKNKDKTKRNPKKKLSSKNVSDSDLQDFFHFNPIIEPLECQFCQEVFTSHVDFGLHSIKHKEDNTYSCHLCEFSEKCADKLIEHVRKHDSLCCIKCKKVFKNRLSAYKHCLHHPAAYVECEICGHKVKPRYLPDHRKKKHTKNVPKKIYTCSICNKSYADHTAMRVHYSQKHKEMGIDVSVVCDVCGKRLSCRDKLIKHQRSHNGHMPYVCQICKRGFAQNATLEGHMRTHTGEKPFVCVYCGKKFAHGTPYRYHVKTHTGEKQFSCDFCGKMFIARSNMKKNILFLVSFGAIRCFPLSIYVQQVAPKWILIQNNIVYVSLVITVFLNLCERTFQTVCFKKEFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00249209;
- 90% Identity
- -
- 80% Identity
- -